co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G23750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
2	GO:0006223: uracil salvage	0.00E+00
3	GO:0097164: ammonium ion metabolic process	0.00E+00
4	GO:0042493: response to drug	0.00E+00
5	GO:1905499: trichome papilla formation	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
8	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
9	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
10	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
11	GO:0006412: translation	1.40E-09
12	GO:0042254: ribosome biogenesis	2.03E-08
13	GO:0032544: plastid translation	2.68E-07
14	GO:0015995: chlorophyll biosynthetic process	3.87E-07
15	GO:0009658: chloroplast organization	3.18E-06
16	GO:0010027: thylakoid membrane organization	5.89E-06
17	GO:0006353: DNA-templated transcription, termination	1.27E-05
18	GO:0090391: granum assembly	2.08E-05
19	GO:0006633: fatty acid biosynthetic process	5.66E-05
20	GO:0010207: photosystem II assembly	1.00E-04
21	GO:0009735: response to cytokinin	1.21E-04
22	GO:0016123: xanthophyll biosynthetic process	1.27E-04
23	GO:0042372: phylloquinone biosynthetic process	2.46E-04
24	GO:1901259: chloroplast rRNA processing	2.46E-04
25	GO:0010196: nonphotochemical quenching	3.19E-04
26	GO:1904966: positive regulation of vitamin E biosynthetic process	3.63E-04
27	GO:1904964: positive regulation of phytol biosynthetic process	3.63E-04
28	GO:0042371: vitamin K biosynthetic process	3.63E-04
29	GO:0043686: co-translational protein modification	3.63E-04
30	GO:0043007: maintenance of rDNA	3.63E-04
31	GO:0034337: RNA folding	3.63E-04
32	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.63E-04
33	GO:0060627: regulation of vesicle-mediated transport	3.63E-04
34	GO:0005980: glycogen catabolic process	3.63E-04
35	GO:0042255: ribosome assembly	4.01E-04
36	GO:0006783: heme biosynthetic process	5.89E-04
37	GO:0032502: developmental process	6.06E-04
38	GO:0019388: galactose catabolic process	7.89E-04
39	GO:0070981: L-asparagine biosynthetic process	7.89E-04
40	GO:0018026: peptidyl-lysine monomethylation	7.89E-04
41	GO:0006529: asparagine biosynthetic process	7.89E-04
42	GO:2000123: positive regulation of stomatal complex development	7.89E-04
43	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.89E-04
44	GO:0006782: protoporphyrinogen IX biosynthetic process	8.10E-04
45	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.28E-03
46	GO:0006518: peptide metabolic process	1.28E-03
47	GO:0046168: glycerol-3-phosphate catabolic process	1.28E-03
48	GO:0015979: photosynthesis	1.81E-03
49	GO:0006165: nucleoside diphosphate phosphorylation	1.84E-03
50	GO:0009650: UV protection	1.84E-03
51	GO:0006228: UTP biosynthetic process	1.84E-03
52	GO:0006424: glutamyl-tRNA aminoacylation	1.84E-03
53	GO:0046739: transport of virus in multicellular host	1.84E-03
54	GO:0009590: detection of gravity	1.84E-03
55	GO:0050482: arachidonic acid secretion	1.84E-03
56	GO:0009413: response to flooding	1.84E-03
57	GO:0006241: CTP biosynthetic process	1.84E-03
58	GO:0006072: glycerol-3-phosphate metabolic process	1.84E-03
59	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.84E-03
60	GO:0019344: cysteine biosynthetic process	1.87E-03
61	GO:2000122: negative regulation of stomatal complex development	2.47E-03
62	GO:0044206: UMP salvage	2.47E-03
63	GO:2000038: regulation of stomatal complex development	2.47E-03
64	GO:0010037: response to carbon dioxide	2.47E-03
65	GO:0015976: carbon utilization	2.47E-03
66	GO:0009765: photosynthesis, light harvesting	2.47E-03
67	GO:0006183: GTP biosynthetic process	2.47E-03
68	GO:0009411: response to UV	2.71E-03
69	GO:0042538: hyperosmotic salinity response	3.08E-03
70	GO:0000304: response to singlet oxygen	3.16E-03
71	GO:0016120: carotene biosynthetic process	3.16E-03
72	GO:0043097: pyrimidine nucleoside salvage	3.16E-03
73	GO:0032543: mitochondrial translation	3.16E-03
74	GO:0010236: plastoquinone biosynthetic process	3.16E-03
75	GO:0045038: protein import into chloroplast thylakoid membrane	3.16E-03
76	GO:0031365: N-terminal protein amino acid modification	3.16E-03
77	GO:0006665: sphingolipid metabolic process	3.16E-03
78	GO:0010375: stomatal complex patterning	3.16E-03
79	GO:0034052: positive regulation of plant-type hypersensitive response	3.16E-03
80	GO:0042335: cuticle development	3.46E-03
81	GO:0000413: protein peptidyl-prolyl isomerization	3.46E-03
82	GO:0006206: pyrimidine nucleobase metabolic process	3.91E-03
83	GO:0032973: amino acid export	3.91E-03
84	GO:0042793: transcription from plastid promoter	3.91E-03
85	GO:0010190: cytochrome b6f complex assembly	3.91E-03
86	GO:0009117: nucleotide metabolic process	3.91E-03
87	GO:0006014: D-ribose metabolic process	3.91E-03
88	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.91E-03
89	GO:0019252: starch biosynthetic process	4.30E-03
90	GO:0010019: chloroplast-nucleus signaling pathway	4.71E-03
91	GO:0010555: response to mannitol	4.71E-03
92	GO:0009955: adaxial/abaxial pattern specification	4.71E-03
93	GO:0010444: guard mother cell differentiation	5.56E-03
94	GO:0006400: tRNA modification	5.56E-03
95	GO:0009772: photosynthetic electron transport in photosystem II	5.56E-03
96	GO:0043090: amino acid import	5.56E-03
97	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.56E-03
98	GO:0043068: positive regulation of programmed cell death	6.46E-03
99	GO:0006644: phospholipid metabolic process	6.46E-03
100	GO:0005978: glycogen biosynthetic process	6.46E-03
101	GO:0009642: response to light intensity	6.46E-03
102	GO:0010497: plasmodesmata-mediated intercellular transport	7.41E-03
103	GO:0017004: cytochrome complex assembly	7.41E-03
104	GO:0009932: cell tip growth	7.41E-03
105	GO:0045454: cell redox homeostasis	7.95E-03
106	GO:0080144: amino acid homeostasis	8.41E-03
107	GO:0009790: embryo development	8.58E-03
108	GO:0009817: defense response to fungus, incompatible interaction	8.69E-03
109	GO:0006869: lipid transport	9.14E-03
110	GO:0042761: very long-chain fatty acid biosynthetic process	9.46E-03
111	GO:0009407: toxin catabolic process	9.60E-03
112	GO:0006535: cysteine biosynthetic process from serine	1.05E-02
113	GO:0043069: negative regulation of programmed cell death	1.05E-02
114	GO:0019684: photosynthesis, light reaction	1.17E-02
115	GO:0009073: aromatic amino acid family biosynthetic process	1.17E-02
116	GO:0006415: translational termination	1.17E-02
117	GO:0018119: peptidyl-cysteine S-nitrosylation	1.17E-02
118	GO:0030001: metal ion transport	1.26E-02
119	GO:0007166: cell surface receptor signaling pathway	1.26E-02
120	GO:0006631: fatty acid metabolic process	1.31E-02
121	GO:0006006: glucose metabolic process	1.41E-02
122	GO:0050826: response to freezing	1.41E-02
123	GO:0009767: photosynthetic electron transport chain	1.41E-02
124	GO:0009266: response to temperature stimulus	1.53E-02
125	GO:0006541: glutamine metabolic process	1.53E-02
126	GO:0009636: response to toxic substance	1.61E-02
127	GO:0010025: wax biosynthetic process	1.80E-02
128	GO:0051017: actin filament bundle assembly	1.93E-02
129	GO:0009116: nucleoside metabolic process	1.93E-02
130	GO:0000027: ribosomal large subunit assembly	1.93E-02
131	GO:0005975: carbohydrate metabolic process	2.01E-02
132	GO:0031408: oxylipin biosynthetic process	2.22E-02
133	GO:0048511: rhythmic process	2.22E-02
134	GO:0061077: chaperone-mediated protein folding	2.22E-02
135	GO:0009814: defense response, incompatible interaction	2.37E-02
136	GO:0031348: negative regulation of defense response	2.37E-02
137	GO:0006012: galactose metabolic process	2.52E-02
138	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.52E-02
139	GO:0010091: trichome branching	2.67E-02
140	GO:0016117: carotenoid biosynthetic process	2.83E-02
141	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.83E-02
142	GO:0008033: tRNA processing	2.99E-02
143	GO:0042752: regulation of circadian rhythm	3.32E-02
144	GO:0009646: response to absence of light	3.32E-02
145	GO:0002229: defense response to oomycetes	3.67E-02
146	GO:0010583: response to cyclopentenone	3.84E-02
147	GO:1901657: glycosyl compound metabolic process	4.02E-02
148	GO:0009828: plant-type cell wall loosening	4.20E-02
149	GO:0009567: double fertilization forming a zygote and endosperm	4.20E-02
150	GO:0009409: response to cold	4.32E-02
151	GO:0007267: cell-cell signaling	4.39E-02
152	GO:0051607: defense response to virus	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
6	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
7	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
8	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
9	GO:0005048: signal sequence binding	0.00E+00
10	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
11	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
12	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
13	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
14	GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding	0.00E+00
15	GO:0019843: rRNA binding	2.38E-14
16	GO:0003735: structural constituent of ribosome	1.30E-10
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.99E-06
18	GO:0051920: peroxiredoxin activity	5.29E-06
19	GO:0016209: antioxidant activity	1.27E-05
20	GO:0016851: magnesium chelatase activity	4.58E-05
21	GO:0005528: FK506 binding	1.64E-04
22	GO:0004071: aspartate-ammonia ligase activity	3.63E-04
23	GO:0004645: phosphorylase activity	3.63E-04
24	GO:0042586: peptide deformylase activity	3.63E-04
25	GO:0009374: biotin binding	3.63E-04
26	GO:0004560: alpha-L-fucosidase activity	3.63E-04
27	GO:0008184: glycogen phosphorylase activity	3.63E-04
28	GO:0080132: fatty acid alpha-hydroxylase activity	3.63E-04
29	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	7.89E-04
30	GO:0004614: phosphoglucomutase activity	7.89E-04
31	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	7.89E-04
32	GO:0004601: peroxidase activity	9.86E-04
33	GO:0004148: dihydrolipoyl dehydrogenase activity	1.28E-03
34	GO:0005504: fatty acid binding	1.28E-03
35	GO:0030267: glyoxylate reductase (NADP) activity	1.28E-03
36	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.28E-03
37	GO:0035529: NADH pyrophosphatase activity	1.84E-03
38	GO:0016149: translation release factor activity, codon specific	1.84E-03
39	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.84E-03
40	GO:0004550: nucleoside diphosphate kinase activity	1.84E-03
41	GO:0043023: ribosomal large subunit binding	1.84E-03
42	GO:0008097: 5S rRNA binding	1.84E-03
43	GO:0045430: chalcone isomerase activity	2.47E-03
44	GO:0043495: protein anchor	2.47E-03
45	GO:0004659: prenyltransferase activity	2.47E-03
46	GO:0016279: protein-lysine N-methyltransferase activity	2.47E-03
47	GO:0004845: uracil phosphoribosyltransferase activity	2.47E-03
48	GO:0003727: single-stranded RNA binding	2.95E-03
49	GO:0004040: amidase activity	3.16E-03
50	GO:0004623: phospholipase A2 activity	3.16E-03
51	GO:0003989: acetyl-CoA carboxylase activity	3.16E-03
52	GO:0009922: fatty acid elongase activity	3.16E-03
53	GO:0003690: double-stranded DNA binding	3.52E-03
54	GO:0016208: AMP binding	3.91E-03
55	GO:0016462: pyrophosphatase activity	3.91E-03
56	GO:0008200: ion channel inhibitor activity	3.91E-03
57	GO:0080030: methyl indole-3-acetate esterase activity	3.91E-03
58	GO:0004747: ribokinase activity	4.71E-03
59	GO:0051753: mannan synthase activity	4.71E-03
60	GO:0004849: uridine kinase activity	4.71E-03
61	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.71E-03
62	GO:0004124: cysteine synthase activity	4.71E-03
63	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.71E-03
64	GO:0008289: lipid binding	5.10E-03
65	GO:0019899: enzyme binding	5.56E-03
66	GO:0043295: glutathione binding	5.56E-03
67	GO:0008237: metallopeptidase activity	5.92E-03
68	GO:0004033: aldo-keto reductase (NADP) activity	6.46E-03
69	GO:0008865: fructokinase activity	6.46E-03
70	GO:0008312: 7S RNA binding	6.46E-03
71	GO:0004034: aldose 1-epimerase activity	6.46E-03
72	GO:0052689: carboxylic ester hydrolase activity	7.04E-03
73	GO:0003747: translation release factor activity	8.41E-03
74	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	8.41E-03
75	GO:0004222: metalloendopeptidase activity	9.60E-03
76	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	9.71E-03
77	GO:0008378: galactosyltransferase activity	1.29E-02
78	GO:0004364: glutathione transferase activity	1.37E-02
79	GO:0004089: carbonate dehydratase activity	1.41E-02
80	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.80E-02
81	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.80E-02
82	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.80E-02
83	GO:0016788: hydrolase activity, acting on ester bonds	1.90E-02
84	GO:0004176: ATP-dependent peptidase activity	2.22E-02
85	GO:0004650: polygalacturonase activity	2.51E-02
86	GO:0030570: pectate lyase activity	2.52E-02
87	GO:0022891: substrate-specific transmembrane transporter activity	2.52E-02
88	GO:0008514: organic anion transmembrane transporter activity	2.67E-02
89	GO:0003713: transcription coactivator activity	3.16E-02
90	GO:0008080: N-acetyltransferase activity	3.16E-02
91	GO:0016853: isomerase activity	3.32E-02
92	GO:0016740: transferase activity	3.45E-02
93	GO:0019901: protein kinase binding	3.49E-02
94	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.67E-02
95	GO:0030170: pyridoxal phosphate binding	3.81E-02
96	GO:0051015: actin filament binding	4.02E-02
97	GO:0005507: copper ion binding	4.31E-02
98	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.39E-02
99	GO:0016597: amino acid binding	4.57E-02
100	GO:0016168: chlorophyll binding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0005835: fatty acid synthase complex	0.00E+00
4	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
5	GO:0009507: chloroplast	2.27E-48
6	GO:0009570: chloroplast stroma	3.27E-36
7	GO:0009941: chloroplast envelope	1.68E-26
8	GO:0009579: thylakoid	7.79E-19
9	GO:0009535: chloroplast thylakoid membrane	4.06E-18
10	GO:0009543: chloroplast thylakoid lumen	2.38E-14
11	GO:0005840: ribosome	6.81E-11
12	GO:0031977: thylakoid lumen	1.03E-10
13	GO:0009534: chloroplast thylakoid	1.35E-10
14	GO:0048046: apoplast	9.88E-08
15	GO:0046658: anchored component of plasma membrane	1.87E-05
16	GO:0010007: magnesium chelatase complex	2.08E-05
17	GO:0009536: plastid	3.33E-05
18	GO:0009505: plant-type cell wall	3.64E-05
19	GO:0031225: anchored component of membrane	1.32E-04
20	GO:0009654: photosystem II oxygen evolving complex	1.89E-04
21	GO:0009923: fatty acid elongase complex	3.63E-04
22	GO:0009344: nitrite reductase complex [NAD(P)H]	3.63E-04
23	GO:0019898: extrinsic component of membrane	5.10E-04
24	GO:0080085: signal recognition particle, chloroplast targeting	7.89E-04
25	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.89E-04
26	GO:0000311: plastid large ribosomal subunit	1.06E-03
27	GO:0009508: plastid chromosome	1.20E-03
28	GO:0009509: chromoplast	1.28E-03
29	GO:0009317: acetyl-CoA carboxylase complex	1.28E-03
30	GO:0031969: chloroplast membrane	1.44E-03
31	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.84E-03
32	GO:0042651: thylakoid membrane	2.07E-03
33	GO:0015935: small ribosomal subunit	2.27E-03
34	GO:0009533: chloroplast stromal thylakoid	5.56E-03
35	GO:0009295: nucleoid	5.92E-03
36	GO:0010319: stromule	5.92E-03
37	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.41E-03
38	GO:0005576: extracellular region	8.34E-03
39	GO:0005763: mitochondrial small ribosomal subunit	8.41E-03
40	GO:0009707: chloroplast outer membrane	8.69E-03
41	GO:0005618: cell wall	1.02E-02
42	GO:0032040: small-subunit processome	1.29E-02
43	GO:0030095: chloroplast photosystem II	1.53E-02
44	GO:0043234: protein complex	1.80E-02
45	GO:0031410: cytoplasmic vesicle	2.37E-02
46	GO:0015629: actin cytoskeleton	2.52E-02
47	GO:0022625: cytosolic large ribosomal subunit	2.59E-02
48	GO:0009706: chloroplast inner membrane	2.75E-02
49	GO:0009523: photosystem II	3.49E-02
50	GO:0005778: peroxisomal membrane	4.39E-02