GO Enrichment Analysis of Co-expressed Genes with
AT1G22850
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 4 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 5 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 6 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 7 | GO:0009773: photosynthetic electron transport in photosystem I | 9.95E-10 |
| 8 | GO:0015979: photosynthesis | 2.83E-06 |
| 9 | GO:0071482: cellular response to light stimulus | 2.85E-06 |
| 10 | GO:0015994: chlorophyll metabolic process | 2.25E-05 |
| 11 | GO:0006546: glycine catabolic process | 2.25E-05 |
| 12 | GO:0010196: nonphotochemical quenching | 1.01E-04 |
| 13 | GO:0009409: response to cold | 1.20E-04 |
| 14 | GO:0019646: aerobic electron transport chain | 1.71E-04 |
| 15 | GO:0043489: RNA stabilization | 1.71E-04 |
| 16 | GO:0000481: maturation of 5S rRNA | 1.71E-04 |
| 17 | GO:0071461: cellular response to redox state | 1.71E-04 |
| 18 | GO:0010028: xanthophyll cycle | 1.71E-04 |
| 19 | GO:0034337: RNA folding | 1.71E-04 |
| 20 | GO:0010206: photosystem II repair | 1.98E-04 |
| 21 | GO:0080005: photosystem stoichiometry adjustment | 3.87E-04 |
| 22 | GO:1900871: chloroplast mRNA modification | 3.87E-04 |
| 23 | GO:0018026: peptidyl-lysine monomethylation | 3.87E-04 |
| 24 | GO:0016122: xanthophyll metabolic process | 3.87E-04 |
| 25 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.87E-04 |
| 26 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.87E-04 |
| 27 | GO:0009767: photosynthetic electron transport chain | 4.24E-04 |
| 28 | GO:0019253: reductive pentose-phosphate cycle | 4.79E-04 |
| 29 | GO:0010207: photosystem II assembly | 4.79E-04 |
| 30 | GO:0006636: unsaturated fatty acid biosynthetic process | 5.97E-04 |
| 31 | GO:0006810: transport | 6.20E-04 |
| 32 | GO:0006000: fructose metabolic process | 6.32E-04 |
| 33 | GO:0006518: peptide metabolic process | 6.32E-04 |
| 34 | GO:0043572: plastid fission | 9.04E-04 |
| 35 | GO:2001141: regulation of RNA biosynthetic process | 9.04E-04 |
| 36 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 9.04E-04 |
| 37 | GO:0006020: inositol metabolic process | 9.04E-04 |
| 38 | GO:0009152: purine ribonucleotide biosynthetic process | 9.04E-04 |
| 39 | GO:0046653: tetrahydrofolate metabolic process | 9.04E-04 |
| 40 | GO:0006021: inositol biosynthetic process | 1.20E-03 |
| 41 | GO:0010021: amylopectin biosynthetic process | 1.20E-03 |
| 42 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.20E-03 |
| 43 | GO:0045727: positive regulation of translation | 1.20E-03 |
| 44 | GO:0019252: starch biosynthetic process | 1.47E-03 |
| 45 | GO:0016120: carotene biosynthetic process | 1.52E-03 |
| 46 | GO:0010236: plastoquinone biosynthetic process | 1.52E-03 |
| 47 | GO:0046855: inositol phosphate dephosphorylation | 1.87E-03 |
| 48 | GO:0042549: photosystem II stabilization | 1.87E-03 |
| 49 | GO:0032259: methylation | 1.94E-03 |
| 50 | GO:0042372: phylloquinone biosynthetic process | 2.24E-03 |
| 51 | GO:0010189: vitamin E biosynthetic process | 2.24E-03 |
| 52 | GO:0055114: oxidation-reduction process | 2.37E-03 |
| 53 | GO:0008152: metabolic process | 2.40E-03 |
| 54 | GO:0042128: nitrate assimilation | 2.52E-03 |
| 55 | GO:0009772: photosynthetic electron transport in photosystem II | 2.64E-03 |
| 56 | GO:0015995: chlorophyll biosynthetic process | 2.65E-03 |
| 57 | GO:0009451: RNA modification | 2.73E-03 |
| 58 | GO:0005978: glycogen biosynthetic process | 3.06E-03 |
| 59 | GO:0032508: DNA duplex unwinding | 3.06E-03 |
| 60 | GO:0010492: maintenance of shoot apical meristem identity | 3.06E-03 |
| 61 | GO:0032544: plastid translation | 3.50E-03 |
| 62 | GO:0006002: fructose 6-phosphate metabolic process | 3.50E-03 |
| 63 | GO:0048507: meristem development | 3.95E-03 |
| 64 | GO:0009735: response to cytokinin | 4.33E-03 |
| 65 | GO:0010205: photoinhibition | 4.44E-03 |
| 66 | GO:0009658: chloroplast organization | 4.61E-03 |
| 67 | GO:0019684: photosynthesis, light reaction | 5.45E-03 |
| 68 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.45E-03 |
| 69 | GO:0006352: DNA-templated transcription, initiation | 5.45E-03 |
| 70 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.45E-03 |
| 71 | GO:0006790: sulfur compound metabolic process | 5.98E-03 |
| 72 | GO:0006364: rRNA processing | 6.43E-03 |
| 73 | GO:0018107: peptidyl-threonine phosphorylation | 6.54E-03 |
| 74 | GO:0006094: gluconeogenesis | 6.54E-03 |
| 75 | GO:0005986: sucrose biosynthetic process | 6.54E-03 |
| 76 | GO:0010020: chloroplast fission | 7.11E-03 |
| 77 | GO:0005985: sucrose metabolic process | 7.69E-03 |
| 78 | GO:0046854: phosphatidylinositol phosphorylation | 7.69E-03 |
| 79 | GO:0016575: histone deacetylation | 9.56E-03 |
| 80 | GO:0006418: tRNA aminoacylation for protein translation | 9.56E-03 |
| 81 | GO:0009768: photosynthesis, light harvesting in photosystem I | 9.56E-03 |
| 82 | GO:0061077: chaperone-mediated protein folding | 1.02E-02 |
| 83 | GO:0000413: protein peptidyl-prolyl isomerization | 1.37E-02 |
| 84 | GO:0006633: fatty acid biosynthetic process | 1.45E-02 |
| 85 | GO:0030163: protein catabolic process | 1.84E-02 |
| 86 | GO:0010027: thylakoid membrane organization | 2.18E-02 |
| 87 | GO:0009817: defense response to fungus, incompatible interaction | 2.64E-02 |
| 88 | GO:0048481: plant ovule development | 2.64E-02 |
| 89 | GO:0018298: protein-chromophore linkage | 2.64E-02 |
| 90 | GO:0010218: response to far red light | 2.83E-02 |
| 91 | GO:0009631: cold acclimation | 2.93E-02 |
| 92 | GO:0007568: aging | 2.93E-02 |
| 93 | GO:0006865: amino acid transport | 3.02E-02 |
| 94 | GO:0045087: innate immune response | 3.12E-02 |
| 95 | GO:0009637: response to blue light | 3.12E-02 |
| 96 | GO:0009853: photorespiration | 3.12E-02 |
| 97 | GO:0006631: fatty acid metabolic process | 3.53E-02 |
| 98 | GO:0045454: cell redox homeostasis | 3.65E-02 |
| 99 | GO:0010114: response to red light | 3.74E-02 |
| 100 | GO:0006857: oligopeptide transport | 4.85E-02 |
| 101 | GO:0042742: defense response to bacterium | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 2 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 3 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 4 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 5 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 6 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 7 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 8 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 9 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 10 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 11 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 12 | GO:0005528: FK506 binding | 6.72E-07 |
| 13 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.97E-06 |
| 14 | GO:0008266: poly(U) RNA binding | 1.86E-05 |
| 15 | GO:0016787: hydrolase activity | 1.01E-04 |
| 16 | GO:0045485: omega-6 fatty acid desaturase activity | 1.71E-04 |
| 17 | GO:0004856: xylulokinase activity | 1.71E-04 |
| 18 | GO:0009496: plastoquinol--plastocyanin reductase activity | 1.71E-04 |
| 19 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 1.71E-04 |
| 20 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.71E-04 |
| 21 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.71E-04 |
| 22 | GO:0004222: metalloendopeptidase activity | 3.58E-04 |
| 23 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.87E-04 |
| 24 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.87E-04 |
| 25 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.87E-04 |
| 26 | GO:0047746: chlorophyllase activity | 3.87E-04 |
| 27 | GO:0042389: omega-3 fatty acid desaturase activity | 3.87E-04 |
| 28 | GO:0016868: intramolecular transferase activity, phosphotransferases | 3.87E-04 |
| 29 | GO:0004618: phosphoglycerate kinase activity | 3.87E-04 |
| 30 | GO:0004047: aminomethyltransferase activity | 3.87E-04 |
| 31 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.87E-04 |
| 32 | GO:0033201: alpha-1,4-glucan synthase activity | 3.87E-04 |
| 33 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.87E-04 |
| 34 | GO:0004373: glycogen (starch) synthase activity | 6.32E-04 |
| 35 | GO:0002161: aminoacyl-tRNA editing activity | 6.32E-04 |
| 36 | GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity | 6.32E-04 |
| 37 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 6.32E-04 |
| 38 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 6.32E-04 |
| 39 | GO:0008864: formyltetrahydrofolate deformylase activity | 6.32E-04 |
| 40 | GO:0051537: 2 iron, 2 sulfur cluster binding | 6.55E-04 |
| 41 | GO:0004176: ATP-dependent peptidase activity | 7.97E-04 |
| 42 | GO:0016851: magnesium chelatase activity | 9.04E-04 |
| 43 | GO:0048487: beta-tubulin binding | 9.04E-04 |
| 44 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 9.04E-04 |
| 45 | GO:0019201: nucleotide kinase activity | 9.04E-04 |
| 46 | GO:0016987: sigma factor activity | 1.20E-03 |
| 47 | GO:0009011: starch synthase activity | 1.20E-03 |
| 48 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 1.20E-03 |
| 49 | GO:0016279: protein-lysine N-methyltransferase activity | 1.20E-03 |
| 50 | GO:0001053: plastid sigma factor activity | 1.20E-03 |
| 51 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.20E-03 |
| 52 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.52E-03 |
| 53 | GO:0019843: rRNA binding | 1.76E-03 |
| 54 | GO:0008237: metallopeptidase activity | 2.01E-03 |
| 55 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.24E-03 |
| 56 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.24E-03 |
| 57 | GO:0004017: adenylate kinase activity | 2.24E-03 |
| 58 | GO:0051920: peroxiredoxin activity | 2.24E-03 |
| 59 | GO:0004033: aldo-keto reductase (NADP) activity | 3.06E-03 |
| 60 | GO:0016209: antioxidant activity | 3.06E-03 |
| 61 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 3.50E-03 |
| 62 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.50E-03 |
| 63 | GO:0008168: methyltransferase activity | 4.40E-03 |
| 64 | GO:0000049: tRNA binding | 5.98E-03 |
| 65 | GO:0016491: oxidoreductase activity | 6.37E-03 |
| 66 | GO:0004022: alcohol dehydrogenase (NAD) activity | 6.54E-03 |
| 67 | GO:0031072: heat shock protein binding | 6.54E-03 |
| 68 | GO:0031409: pigment binding | 8.30E-03 |
| 69 | GO:0003954: NADH dehydrogenase activity | 8.92E-03 |
| 70 | GO:0004407: histone deacetylase activity | 8.92E-03 |
| 71 | GO:0043424: protein histidine kinase binding | 9.56E-03 |
| 72 | GO:0003756: protein disulfide isomerase activity | 1.23E-02 |
| 73 | GO:0005509: calcium ion binding | 1.28E-02 |
| 74 | GO:0004812: aminoacyl-tRNA ligase activity | 1.30E-02 |
| 75 | GO:0050662: coenzyme binding | 1.52E-02 |
| 76 | GO:0048038: quinone binding | 1.68E-02 |
| 77 | GO:0008483: transaminase activity | 2.01E-02 |
| 78 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 2.02E-02 |
| 79 | GO:0016168: chlorophyll binding | 2.27E-02 |
| 80 | GO:0004721: phosphoprotein phosphatase activity | 2.45E-02 |
| 81 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.55E-02 |
| 82 | GO:0008236: serine-type peptidase activity | 2.55E-02 |
| 83 | GO:0003729: mRNA binding | 2.61E-02 |
| 84 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 2.93E-02 |
| 85 | GO:0046872: metal ion binding | 3.73E-02 |
| 86 | GO:0043621: protein self-association | 3.96E-02 |
| 87 | GO:0015293: symporter activity | 4.06E-02 |
| 88 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.62E-02 |
| 89 | GO:0009055: electron carrier activity | 4.81E-02 |
| 90 | GO:0004519: endonuclease activity | 4.88E-02 |
| 91 | GO:0015171: amino acid transmembrane transporter activity | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 7.40E-68 |
| 3 | GO:0009534: chloroplast thylakoid | 2.93E-40 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 9.49E-33 |
| 5 | GO:0009941: chloroplast envelope | 9.58E-32 |
| 6 | GO:0009570: chloroplast stroma | 1.37E-25 |
| 7 | GO:0009579: thylakoid | 2.30E-15 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 1.80E-12 |
| 9 | GO:0009706: chloroplast inner membrane | 2.60E-08 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.62E-08 |
| 11 | GO:0031977: thylakoid lumen | 6.73E-08 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 8.51E-07 |
| 13 | GO:0019898: extrinsic component of membrane | 4.54E-06 |
| 14 | GO:0030095: chloroplast photosystem II | 1.86E-05 |
| 15 | GO:0010287: plastoglobule | 2.10E-05 |
| 16 | GO:0009533: chloroplast stromal thylakoid | 1.01E-04 |
| 17 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.71E-04 |
| 18 | GO:0009547: plastid ribosome | 1.71E-04 |
| 19 | GO:0010319: stromule | 1.86E-04 |
| 20 | GO:0031304: intrinsic component of mitochondrial inner membrane | 3.87E-04 |
| 21 | GO:0042170: plastid membrane | 3.87E-04 |
| 22 | GO:0010007: magnesium chelatase complex | 6.32E-04 |
| 23 | GO:0005960: glycine cleavage complex | 9.04E-04 |
| 24 | GO:0031969: chloroplast membrane | 1.15E-03 |
| 25 | GO:0009512: cytochrome b6f complex | 1.52E-03 |
| 26 | GO:0009501: amyloplast | 3.06E-03 |
| 27 | GO:0042644: chloroplast nucleoid | 3.95E-03 |
| 28 | GO:0048046: apoplast | 4.48E-03 |
| 29 | GO:0000311: plastid large ribosomal subunit | 5.98E-03 |
| 30 | GO:0032040: small-subunit processome | 5.98E-03 |
| 31 | GO:0009508: plastid chromosome | 6.54E-03 |
| 32 | GO:0030076: light-harvesting complex | 7.69E-03 |
| 33 | GO:0042651: thylakoid membrane | 9.56E-03 |
| 34 | GO:0009522: photosystem I | 1.52E-02 |
| 35 | GO:0009523: photosystem II | 1.60E-02 |
| 36 | GO:0009295: nucleoid | 2.01E-02 |
| 37 | GO:0030529: intracellular ribonucleoprotein complex | 2.18E-02 |
| 38 | GO:0016021: integral component of membrane | 3.67E-02 |
| 39 | GO:0043231: intracellular membrane-bounded organelle | 4.94E-02 |