Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G21000

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
2GO:1904215: regulation of protein import into chloroplast stroma0.00E+00
3GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
4GO:0009991: response to extracellular stimulus0.00E+00
5GO:0000169: activation of MAPK activity involved in osmosensory signaling pathway0.00E+00
6GO:0032780: negative regulation of ATPase activity0.00E+00
7GO:0010111: glyoxysome organization0.00E+00
8GO:0046777: protein autophosphorylation7.76E-09
9GO:0006212: uracil catabolic process6.50E-06
10GO:0019483: beta-alanine biosynthetic process6.50E-06
11GO:0006468: protein phosphorylation7.03E-06
12GO:0010200: response to chitin1.02E-05
13GO:0016559: peroxisome fission1.43E-05
14GO:0010120: camalexin biosynthetic process2.05E-05
15GO:0048194: Golgi vesicle budding4.98E-05
16GO:0010150: leaf senescence8.61E-05
17GO:0006878: cellular copper ion homeostasis8.79E-05
18GO:0060548: negative regulation of cell death8.79E-05
19GO:0009738: abscisic acid-activated signaling pathway1.76E-04
20GO:1900425: negative regulation of defense response to bacterium1.97E-04
21GO:0031348: negative regulation of defense response2.71E-04
22GO:0006970: response to osmotic stress2.82E-04
23GO:0009723: response to ethylene3.29E-04
24GO:0080136: priming of cellular response to stress3.81E-04
25GO:0034214: protein hexamerization3.81E-04
26GO:0010201: response to continuous far red light stimulus by the high-irradiance response system3.81E-04
27GO:0048508: embryonic meristem development3.81E-04
28GO:0006805: xenobiotic metabolic process3.81E-04
29GO:0000303: response to superoxide3.81E-04
30GO:0015969: guanosine tetraphosphate metabolic process3.81E-04
31GO:0080173: male-female gamete recognition during double fertilization3.81E-04
32GO:0006481: C-terminal protein methylation3.81E-04
33GO:0010941: regulation of cell death3.81E-04
34GO:0006605: protein targeting4.31E-04
35GO:0030968: endoplasmic reticulum unfolded protein response5.27E-04
36GO:0043562: cellular response to nitrogen levels5.27E-04
37GO:0051603: proteolysis involved in cellular protein catabolic process6.72E-04
38GO:0006914: autophagy7.79E-04
39GO:0007584: response to nutrient8.27E-04
40GO:1902000: homogentisate catabolic process8.27E-04
41GO:0009945: radial axis specification8.27E-04
42GO:0019441: tryptophan catabolic process to kynurenine8.27E-04
43GO:0006996: organelle organization8.27E-04
44GO:0019395: fatty acid oxidation8.27E-04
45GO:0031648: protein destabilization8.27E-04
46GO:0010608: posttranscriptional regulation of gene expression8.27E-04
47GO:1905182: positive regulation of urease activity8.27E-04
48GO:0019521: D-gluconate metabolic process8.27E-04
49GO:0006672: ceramide metabolic process8.27E-04
50GO:0035556: intracellular signal transduction8.43E-04
51GO:0042742: defense response to bacterium1.14E-03
52GO:0000266: mitochondrial fission1.14E-03
53GO:0010102: lateral root morphogenesis1.29E-03
54GO:0006807: nitrogen compound metabolic process1.29E-03
55GO:0009651: response to salt stress1.29E-03
56GO:1900140: regulation of seedling development1.34E-03
57GO:0010359: regulation of anion channel activity1.34E-03
58GO:0061158: 3'-UTR-mediated mRNA destabilization1.34E-03
59GO:0080055: low-affinity nitrate transport1.34E-03
60GO:0071492: cellular response to UV-A1.34E-03
61GO:0009072: aromatic amino acid family metabolic process1.34E-03
62GO:0048281: inflorescence morphogenesis1.34E-03
63GO:0009873: ethylene-activated signaling pathway1.39E-03
64GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.73E-03
65GO:0034976: response to endoplasmic reticulum stress1.82E-03
66GO:0006809: nitric oxide biosynthetic process1.93E-03
67GO:0009399: nitrogen fixation1.93E-03
68GO:0072583: clathrin-dependent endocytosis1.93E-03
69GO:0071786: endoplasmic reticulum tubular network organization1.93E-03
70GO:0001676: long-chain fatty acid metabolic process1.93E-03
71GO:0006624: vacuolar protein processing1.93E-03
72GO:2001289: lipid X metabolic process1.93E-03
73GO:0070301: cellular response to hydrogen peroxide1.93E-03
74GO:0015031: protein transport2.02E-03
75GO:0006631: fatty acid metabolic process2.28E-03
76GO:0009737: response to abscisic acid2.57E-03
77GO:2000038: regulation of stomatal complex development2.60E-03
78GO:0010188: response to microbial phytotoxin2.60E-03
79GO:0010508: positive regulation of autophagy2.60E-03
80GO:0006542: glutamine biosynthetic process2.60E-03
81GO:0071486: cellular response to high light intensity2.60E-03
82GO:1903830: magnesium ion transmembrane transport2.60E-03
83GO:0009765: photosynthesis, light harvesting2.60E-03
84GO:0010107: potassium ion import2.60E-03
85GO:0010363: regulation of plant-type hypersensitive response2.60E-03
86GO:0009611: response to wounding2.73E-03
87GO:0007166: cell surface receptor signaling pathway3.07E-03
88GO:0010468: regulation of gene expression3.28E-03
89GO:0006090: pyruvate metabolic process3.32E-03
90GO:0030308: negative regulation of cell growth3.32E-03
91GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.44E-03
92GO:0006979: response to oxidative stress3.56E-03
93GO:0042631: cellular response to water deprivation3.72E-03
94GO:0009267: cellular response to starvation4.11E-03
95GO:0035435: phosphate ion transmembrane transport4.11E-03
96GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione4.11E-03
97GO:0006751: glutathione catabolic process4.11E-03
98GO:0070814: hydrogen sulfide biosynthetic process4.11E-03
99GO:1902456: regulation of stomatal opening4.11E-03
100GO:0010358: leaf shaping4.11E-03
101GO:0006623: protein targeting to vacuole4.62E-03
102GO:0048367: shoot system development4.77E-03
103GO:0000911: cytokinesis by cell plate formation4.95E-03
104GO:0009942: longitudinal axis specification4.95E-03
105GO:0010193: response to ozone4.95E-03
106GO:2000037: regulation of stomatal complex patterning4.95E-03
107GO:0009626: plant-type hypersensitive response4.97E-03
108GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.85E-03
109GO:0006333: chromatin assembly or disassembly5.85E-03
110GO:0010038: response to metal ion5.85E-03
111GO:0015693: magnesium ion transport5.85E-03
112GO:0050790: regulation of catalytic activity5.85E-03
113GO:0010044: response to aluminum ion5.85E-03
114GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway5.85E-03
115GO:0009610: response to symbiotic fungus5.85E-03
116GO:0006955: immune response5.85E-03
117GO:0046470: phosphatidylcholine metabolic process5.85E-03
118GO:0043090: amino acid import5.85E-03
119GO:0070370: cellular heat acclimation5.85E-03
120GO:0006464: cellular protein modification process6.00E-03
121GO:0051607: defense response to virus6.76E-03
122GO:0009819: drought recovery6.80E-03
123GO:1900150: regulation of defense response to fungus6.80E-03
124GO:0009816: defense response to bacterium, incompatible interaction7.58E-03
125GO:0009788: negative regulation of abscisic acid-activated signaling pathway7.58E-03
126GO:0044550: secondary metabolite biosynthetic process7.68E-03
127GO:0009808: lignin metabolic process7.80E-03
128GO:0006002: fructose 6-phosphate metabolic process7.80E-03
129GO:0042128: nitrate assimilation8.01E-03
130GO:0006950: response to stress8.44E-03
131GO:0009845: seed germination8.55E-03
132GO:0006098: pentose-phosphate shunt8.86E-03
133GO:0090333: regulation of stomatal closure8.86E-03
134GO:0009821: alkaloid biosynthetic process8.86E-03
135GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.96E-03
136GO:0008202: steroid metabolic process9.96E-03
137GO:2000280: regulation of root development9.96E-03
138GO:0007568: aging1.08E-02
139GO:0010119: regulation of stomatal movement1.08E-02
140GO:0000103: sulfate assimilation1.11E-02
141GO:0019538: protein metabolic process1.11E-02
142GO:0043069: negative regulation of programmed cell death1.11E-02
143GO:0010629: negative regulation of gene expression1.11E-02
144GO:0009867: jasmonic acid mediated signaling pathway1.19E-02
145GO:0072593: reactive oxygen species metabolic process1.23E-02
146GO:0043085: positive regulation of catalytic activity1.23E-02
147GO:0030148: sphingolipid biosynthetic process1.23E-02
148GO:0010072: primary shoot apical meristem specification1.23E-02
149GO:0010105: negative regulation of ethylene-activated signaling pathway1.36E-02
150GO:0045037: protein import into chloroplast stroma1.36E-02
151GO:0012501: programmed cell death1.36E-02
152GO:0015706: nitrate transport1.36E-02
153GO:0006470: protein dephosphorylation1.38E-02
154GO:0010229: inflorescence development1.48E-02
155GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.48E-02
156GO:0007034: vacuolar transport1.62E-02
157GO:0009887: animal organ morphogenesis1.62E-02
158GO:0034605: cellular response to heat1.62E-02
159GO:0009636: response to toxic substance1.73E-02
160GO:0009825: multidimensional cell growth1.75E-02
161GO:0010167: response to nitrate1.75E-02
162GO:0070588: calcium ion transmembrane transport1.75E-02
163GO:0010053: root epidermal cell differentiation1.75E-02
164GO:0007031: peroxisome organization1.75E-02
165GO:0042343: indole glucosinolate metabolic process1.75E-02
166GO:0009409: response to cold1.87E-02
167GO:2000377: regulation of reactive oxygen species metabolic process2.04E-02
168GO:0009695: jasmonic acid biosynthetic process2.19E-02
169GO:0016575: histone deacetylation2.19E-02
170GO:0098542: defense response to other organism2.34E-02
171GO:0031408: oxylipin biosynthetic process2.34E-02
172GO:0007005: mitochondrion organization2.50E-02
173GO:0009693: ethylene biosynthetic process2.65E-02
174GO:0071215: cellular response to abscisic acid stimulus2.65E-02
175GO:0010227: floral organ abscission2.65E-02
176GO:0009620: response to fungus2.70E-02
177GO:0006952: defense response2.77E-02
178GO:0010091: trichome branching2.82E-02
179GO:0042147: retrograde transport, endosome to Golgi2.98E-02
180GO:0018105: peptidyl-serine phosphorylation3.05E-02
181GO:0010118: stomatal movement3.15E-02
182GO:0071472: cellular response to salt stress3.33E-02
183GO:0006662: glycerol ether metabolic process3.33E-02
184GO:0010154: fruit development3.33E-02
185GO:0010197: polar nucleus fusion3.33E-02
186GO:0045892: negative regulation of transcription, DNA-templated3.40E-02
187GO:0006886: intracellular protein transport3.46E-02
188GO:0050832: defense response to fungus3.49E-02
189GO:0048544: recognition of pollen3.50E-02
190GO:0016567: protein ubiquitination3.66E-02
191GO:0010183: pollen tube guidance3.68E-02
192GO:0009749: response to glucose3.68E-02
193GO:0006508: proteolysis3.73E-02
194GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.86E-02
195GO:0000302: response to reactive oxygen species3.86E-02
196GO:0002229: defense response to oomycetes3.86E-02
197GO:0006635: fatty acid beta-oxidation3.86E-02
198GO:0016032: viral process4.05E-02
199GO:0007264: small GTPase mediated signal transduction4.05E-02
200GO:0010583: response to cyclopentenone4.05E-02
201GO:0009751: response to salicylic acid4.24E-02
202GO:0009790: embryo development4.31E-02
203GO:0048364: root development4.54E-02
204GO:0071805: potassium ion transmembrane transport4.62E-02
RankGO TermAdjusted P value
1GO:0004698: calcium-dependent protein kinase C activity0.00E+00
2GO:0033550: MAP kinase tyrosine phosphatase activity0.00E+00
3GO:0004157: dihydropyrimidinase activity0.00E+00
4GO:0019786: Atg8-specific protease activity0.00E+00
5GO:0042030: ATPase inhibitor activity0.00E+00
6GO:0016034: maleylacetoacetate isomerase activity0.00E+00
7GO:0003837: beta-ureidopropionase activity0.00E+00
8GO:0050242: pyruvate, phosphate dikinase activity0.00E+00
9GO:0005524: ATP binding2.77E-12
10GO:0016301: kinase activity5.20E-08
11GO:0004674: protein serine/threonine kinase activity2.93E-07
12GO:0005515: protein binding3.23E-07
13GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.02E-06
14GO:0004012: phospholipid-translocating ATPase activity5.99E-06
15GO:0019779: Atg8 activating enzyme activity6.50E-06
16GO:0019776: Atg8 ligase activity8.79E-05
17GO:0102391: decanoate--CoA ligase activity2.66E-04
18GO:0004672: protein kinase activity3.24E-04
19GO:0004467: long-chain fatty acid-CoA ligase activity3.44E-04
20GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity3.81E-04
21GO:0030295: protein kinase activator activity3.81E-04
22GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity3.81E-04
23GO:0032050: clathrin heavy chain binding3.81E-04
24GO:0004714: transmembrane receptor protein tyrosine kinase activity4.31E-04
25GO:0004197: cysteine-type endopeptidase activity6.64E-04
26GO:0045140: inositol phosphoceramide synthase activity8.27E-04
27GO:0004061: arylformamidase activity8.27E-04
28GO:0008728: GTP diphosphokinase activity8.27E-04
29GO:0047209: coniferyl-alcohol glucosyltransferase activity8.27E-04
30GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding8.27E-04
31GO:0003988: acetyl-CoA C-acyltransferase activity8.27E-04
32GO:0004566: beta-glucuronidase activity8.27E-04
33GO:0004713: protein tyrosine kinase activity8.68E-04
34GO:0003840: gamma-glutamyltransferase activity1.34E-03
35GO:0036374: glutathione hydrolase activity1.34E-03
36GO:0004781: sulfate adenylyltransferase (ATP) activity1.34E-03
37GO:0016805: dipeptidase activity1.34E-03
38GO:0080054: low-affinity nitrate transmembrane transporter activity1.34E-03
39GO:0016151: nickel cation binding1.34E-03
40GO:0005047: signal recognition particle binding1.34E-03
41GO:0030527: structural constituent of chromatin1.93E-03
42GO:0004416: hydroxyacylglutathione hydrolase activity1.93E-03
43GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.93E-03
44GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.93E-03
45GO:0033612: receptor serine/threonine kinase binding2.44E-03
46GO:0004707: MAP kinase activity2.44E-03
47GO:0016004: phospholipase activator activity2.60E-03
48GO:0004301: epoxide hydrolase activity2.60E-03
49GO:0005509: calcium ion binding2.94E-03
50GO:0003924: GTPase activity3.25E-03
51GO:0005546: phosphatidylinositol-4,5-bisphosphate binding3.32E-03
52GO:0005496: steroid binding3.32E-03
53GO:0031386: protein tag3.32E-03
54GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.32E-03
55GO:0004356: glutamate-ammonia ligase activity3.32E-03
56GO:0031593: polyubiquitin binding4.11E-03
57GO:0008234: cysteine-type peptidase activity4.22E-03
58GO:0000287: magnesium ion binding4.73E-03
59GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.95E-03
60GO:0003950: NAD+ ADP-ribosyltransferase activity4.95E-03
61GO:0008113: peptide-methionine (S)-S-oxide reductase activity4.95E-03
62GO:0003872: 6-phosphofructokinase activity5.85E-03
63GO:0004620: phospholipase activity5.85E-03
64GO:0008235: metalloexopeptidase activity5.85E-03
65GO:0005516: calmodulin binding5.85E-03
66GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity6.37E-03
67GO:0004708: MAP kinase kinase activity6.80E-03
68GO:0004869: cysteine-type endopeptidase inhibitor activity6.80E-03
69GO:0005525: GTP binding6.96E-03
70GO:0016887: ATPase activity7.01E-03
71GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity7.80E-03
72GO:0008142: oxysterol binding7.80E-03
73GO:0004630: phospholipase D activity7.80E-03
74GO:0005267: potassium channel activity7.80E-03
75GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.80E-03
76GO:0004683: calmodulin-dependent protein kinase activity8.44E-03
77GO:0016844: strictosidine synthase activity9.96E-03
78GO:0045309: protein phosphorylated amino acid binding9.96E-03
79GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.00E-02
80GO:0019904: protein domain specific binding1.23E-02
81GO:0004177: aminopeptidase activity1.23E-02
82GO:0004521: endoribonuclease activity1.36E-02
83GO:0005315: inorganic phosphate transmembrane transporter activity1.48E-02
84GO:0015095: magnesium ion transmembrane transporter activity1.48E-02
85GO:0004364: glutathione transferase activity1.48E-02
86GO:0005388: calcium-transporting ATPase activity1.48E-02
87GO:0031624: ubiquitin conjugating enzyme binding1.62E-02
88GO:0004175: endopeptidase activity1.62E-02
89GO:0019825: oxygen binding1.64E-02
90GO:0005198: structural molecule activity1.73E-02
91GO:0015293: symporter activity1.73E-02
92GO:0004190: aspartic-type endopeptidase activity1.75E-02
93GO:0004725: protein tyrosine phosphatase activity1.89E-02
94GO:0003954: NADH dehydrogenase activity2.04E-02
95GO:0004407: histone deacetylase activity2.04E-02
96GO:0046872: metal ion binding2.11E-02
97GO:0015079: potassium ion transmembrane transporter activity2.19E-02
98GO:0043424: protein histidine kinase binding2.19E-02
99GO:0004298: threonine-type endopeptidase activity2.34E-02
100GO:0020037: heme binding2.49E-02
101GO:0003727: single-stranded RNA binding2.82E-02
102GO:0003756: protein disulfide isomerase activity2.82E-02
103GO:0005506: iron ion binding2.89E-02
104GO:0047134: protein-disulfide reductase activity2.98E-02
105GO:0046873: metal ion transmembrane transporter activity3.33E-02
106GO:0001085: RNA polymerase II transcription factor binding3.33E-02
107GO:0004791: thioredoxin-disulfide reductase activity3.50E-02
108GO:0016853: isomerase activity3.50E-02
109GO:0042803: protein homodimerization activity3.53E-02
110GO:0004871: signal transducer activity3.53E-02
111GO:0004722: protein serine/threonine phosphatase activity3.73E-02
112GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.80E-02
113GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.24E-02
114GO:0030246: carbohydrate binding4.42E-02
115GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.74E-02
116GO:0005507: copper ion binding4.79E-02
117GO:0016597: amino acid binding4.82E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0005785: signal recognition particle receptor complex0.00E+00
3GO:0005886: plasma membrane2.74E-10
4GO:0005783: endoplasmic reticulum1.76E-07
5GO:0016021: integral component of membrane1.83E-06
6GO:0005777: peroxisome1.06E-05
7GO:0030139: endocytic vesicle2.27E-05
8GO:0031902: late endosome membrane3.74E-05
9GO:0005773: vacuole3.80E-05
10GO:0005775: vacuolar lumen4.98E-05
11GO:0000323: lytic vacuole4.98E-05
12GO:0031972: chloroplast intermembrane space3.81E-04
13GO:0000421: autophagosome membrane4.31E-04
14GO:0005802: trans-Golgi network6.49E-04
15GO:0031304: intrinsic component of mitochondrial inner membrane8.27E-04
16GO:0005778: peroxisomal membrane8.41E-04
17GO:0017119: Golgi transport complex8.68E-04
18GO:0005789: endoplasmic reticulum membrane1.09E-03
19GO:0042406: extrinsic component of endoplasmic reticulum membrane1.34E-03
20GO:0005794: Golgi apparatus1.36E-03
21GO:0005764: lysosome1.46E-03
22GO:0005829: cytosol1.56E-03
23GO:0071782: endoplasmic reticulum tubular network1.93E-03
24GO:0032585: multivesicular body membrane1.93E-03
25GO:0005741: mitochondrial outer membrane2.44E-03
26GO:0005776: autophagosome2.60E-03
27GO:0031410: cytoplasmic vesicle2.67E-03
28GO:0005768: endosome2.78E-03
29GO:0005945: 6-phosphofructokinase complex3.32E-03
30GO:0000164: protein phosphatase type 1 complex3.32E-03
31GO:0030136: clathrin-coated vesicle3.44E-03
32GO:0030904: retromer complex4.11E-03
33GO:0016363: nuclear matrix4.95E-03
34GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane6.80E-03
35GO:0005779: integral component of peroxisomal membrane7.80E-03
36GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.80E-03
37GO:0009514: glyoxysome7.80E-03
38GO:0005623: cell8.00E-03
39GO:0031901: early endosome membrane8.86E-03
40GO:0016604: nuclear body9.96E-03
41GO:0030665: clathrin-coated vesicle membrane9.96E-03
42GO:0030125: clathrin vesicle coat1.11E-02
43GO:0005765: lysosomal membrane1.23E-02
44GO:0016602: CCAAT-binding factor complex1.48E-02
45GO:0009506: plasmodesma1.60E-02
46GO:0005769: early endosome1.89E-02
47GO:0031966: mitochondrial membrane1.93E-02
48GO:0005774: vacuolar membrane2.09E-02
49GO:0045271: respiratory chain complex I2.19E-02
50GO:0005635: nuclear envelope2.23E-02
51GO:0005839: proteasome core complex2.34E-02
52GO:0009523: photosystem II3.68E-02
53GO:0000785: chromatin4.05E-02
54GO:0071944: cell periphery4.24E-02
55GO:0016020: membrane4.71E-02
56GO:0043231: intracellular membrane-bounded organelle4.85E-02
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Gene type



Gene DE type