co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G18460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061635: regulation of protein complex stability	0.00E+00
2	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
3	GO:0017038: protein import	0.00E+00
4	GO:0000372: Group I intron splicing	0.00E+00
5	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
6	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
7	GO:1900000: regulation of anthocyanin catabolic process	0.00E+00
8	GO:0090706: specification of plant organ position	0.00E+00
9	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
10	GO:0006000: fructose metabolic process	8.14E-06
11	GO:0000476: maturation of 4.5S rRNA	2.18E-04
12	GO:0051180: vitamin transport	2.18E-04
13	GO:0000967: rRNA 5'-end processing	2.18E-04
14	GO:0030974: thiamine pyrophosphate transport	2.18E-04
15	GO:0010480: microsporocyte differentiation	2.18E-04
16	GO:0006723: cuticle hydrocarbon biosynthetic process	2.18E-04
17	GO:0000481: maturation of 5S rRNA	2.18E-04
18	GO:0042547: cell wall modification involved in multidimensional cell growth	2.18E-04
19	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	2.18E-04
20	GO:0043609: regulation of carbon utilization	2.18E-04
21	GO:0034337: RNA folding	2.18E-04
22	GO:0010450: inflorescence meristem growth	2.18E-04
23	GO:0016119: carotene metabolic process	2.18E-04
24	GO:0006002: fructose 6-phosphate metabolic process	2.33E-04
25	GO:0000373: Group II intron splicing	2.82E-04
26	GO:0015893: drug transport	4.86E-04
27	GO:0034755: iron ion transmembrane transport	4.86E-04
28	GO:0016560: protein import into peroxisome matrix, docking	4.86E-04
29	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	4.86E-04
30	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.86E-04
31	GO:0034470: ncRNA processing	4.86E-04
32	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.86E-04
33	GO:0006094: gluconeogenesis	5.92E-04
34	GO:0009767: photosynthetic electron transport chain	5.92E-04
35	GO:0010207: photosystem II assembly	6.66E-04
36	GO:0006839: mitochondrial transport	7.78E-04
37	GO:0043447: alkane biosynthetic process	7.90E-04
38	GO:0006013: mannose metabolic process	7.90E-04
39	GO:0043617: cellular response to sucrose starvation	7.90E-04
40	GO:0051176: positive regulation of sulfur metabolic process	7.90E-04
41	GO:0045165: cell fate commitment	7.90E-04
42	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	7.90E-04
43	GO:0031022: nuclear migration along microfilament	7.90E-04
44	GO:0055070: copper ion homeostasis	1.13E-03
45	GO:0006515: misfolded or incompletely synthesized protein catabolic process	1.13E-03
46	GO:0000919: cell plate assembly	1.50E-03
47	GO:0010109: regulation of photosynthesis	1.50E-03
48	GO:0045727: positive regulation of translation	1.50E-03
49	GO:0009741: response to brassinosteroid	1.78E-03
50	GO:0046785: microtubule polymerization	1.91E-03
51	GO:0006564: L-serine biosynthetic process	1.91E-03
52	GO:0009904: chloroplast accumulation movement	1.91E-03
53	GO:0035434: copper ion transmembrane transport	1.91E-03
54	GO:1902183: regulation of shoot apical meristem development	1.91E-03
55	GO:0016123: xanthophyll biosynthetic process	1.91E-03
56	GO:0009435: NAD biosynthetic process	1.91E-03
57	GO:0010158: abaxial cell fate specification	1.91E-03
58	GO:0009646: response to absence of light	1.92E-03
59	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.04E-03
60	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.35E-03
61	GO:0000741: karyogamy	2.35E-03
62	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.35E-03
63	GO:0006354: DNA-templated transcription, elongation	2.35E-03
64	GO:0010405: arabinogalactan protein metabolic process	2.35E-03
65	GO:0006751: glutathione catabolic process	2.35E-03
66	GO:0042549: photosystem II stabilization	2.35E-03
67	GO:0000470: maturation of LSU-rRNA	2.35E-03
68	GO:0016554: cytidine to uridine editing	2.35E-03
69	GO:0015979: photosynthesis	2.37E-03
70	GO:0010090: trichome morphogenesis	2.50E-03
71	GO:0010067: procambium histogenesis	2.83E-03
72	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.83E-03
73	GO:0009903: chloroplast avoidance movement	2.83E-03
74	GO:0071669: plant-type cell wall organization or biogenesis	3.33E-03
75	GO:1900057: positive regulation of leaf senescence	3.33E-03
76	GO:0009645: response to low light intensity stimulus	3.33E-03
77	GO:0051510: regulation of unidimensional cell growth	3.33E-03
78	GO:0048437: floral organ development	3.33E-03
79	GO:0015995: chlorophyll biosynthetic process	3.72E-03
80	GO:0006402: mRNA catabolic process	3.86E-03
81	GO:0030091: protein repair	3.86E-03
82	GO:0009690: cytokinin metabolic process	3.86E-03
83	GO:0006605: protein targeting	3.86E-03
84	GO:0032508: DNA duplex unwinding	3.86E-03
85	GO:0009231: riboflavin biosynthetic process	3.86E-03
86	GO:0008610: lipid biosynthetic process	3.86E-03
87	GO:0016311: dephosphorylation	3.92E-03
88	GO:0030244: cellulose biosynthetic process	4.12E-03
89	GO:0018298: protein-chromophore linkage	4.12E-03
90	GO:0032544: plastid translation	4.42E-03
91	GO:0010093: specification of floral organ identity	4.42E-03
92	GO:0010206: photosystem II repair	5.00E-03
93	GO:2000024: regulation of leaf development	5.00E-03
94	GO:0009060: aerobic respiration	5.00E-03
95	GO:0006098: pentose-phosphate shunt	5.00E-03
96	GO:1900865: chloroplast RNA modification	5.62E-03
97	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	5.62E-03
98	GO:0006779: porphyrin-containing compound biosynthetic process	5.62E-03
99	GO:0030001: metal ion transport	5.95E-03
100	GO:0006782: protoporphyrinogen IX biosynthetic process	6.25E-03
101	GO:0009826: unidimensional cell growth	6.81E-03
102	GO:0006879: cellular iron ion homeostasis	6.91E-03
103	GO:0009750: response to fructose	6.91E-03
104	GO:0016485: protein processing	6.91E-03
105	GO:0048229: gametophyte development	6.91E-03
106	GO:0009644: response to high light intensity	7.28E-03
107	GO:0005983: starch catabolic process	7.60E-03
108	GO:0006468: protein phosphorylation	8.16E-03
109	GO:0030048: actin filament-based movement	8.30E-03
110	GO:2000028: regulation of photoperiodism, flowering	8.30E-03
111	GO:0009718: anthocyanin-containing compound biosynthetic process	8.30E-03
112	GO:0010075: regulation of meristem growth	8.30E-03
113	GO:0005986: sucrose biosynthetic process	8.30E-03
114	GO:0009933: meristem structural organization	9.03E-03
115	GO:0010223: secondary shoot formation	9.03E-03
116	GO:0009934: regulation of meristem structural organization	9.03E-03
117	GO:0048768: root hair cell tip growth	9.03E-03
118	GO:0006364: rRNA processing	9.08E-03
119	GO:0010025: wax biosynthetic process	1.06E-02
120	GO:0006096: glycolytic process	1.07E-02
121	GO:0009944: polarity specification of adaxial/abaxial axis	1.14E-02
122	GO:0009768: photosynthesis, light harvesting in photosystem I	1.22E-02
123	GO:0006418: tRNA aminoacylation for protein translation	1.22E-02
124	GO:0061077: chaperone-mediated protein folding	1.30E-02
125	GO:0009742: brassinosteroid mediated signaling pathway	1.37E-02
126	GO:0009814: defense response, incompatible interaction	1.39E-02
127	GO:0016226: iron-sulfur cluster assembly	1.39E-02
128	GO:0080092: regulation of pollen tube growth	1.39E-02
129	GO:0006810: transport	1.40E-02
130	GO:0040007: growth	1.48E-02
131	GO:0001944: vasculature development	1.48E-02
132	GO:0006629: lipid metabolic process	1.54E-02
133	GO:0010089: xylem development	1.57E-02
134	GO:0042335: cuticle development	1.75E-02
135	GO:0000271: polysaccharide biosynthetic process	1.75E-02
136	GO:0008152: metabolic process	1.75E-02
137	GO:0048653: anther development	1.75E-02
138	GO:0042631: cellular response to water deprivation	1.75E-02
139	GO:0010154: fruit development	1.85E-02
140	GO:0010197: polar nucleus fusion	1.85E-02
141	GO:0007018: microtubule-based movement	1.95E-02
142	GO:0009791: post-embryonic development	2.05E-02
143	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.15E-02
144	GO:0010583: response to cyclopentenone	2.25E-02
145	GO:0007623: circadian rhythm	2.25E-02
146	GO:0016032: viral process	2.25E-02
147	GO:0048235: pollen sperm cell differentiation	2.25E-02
148	GO:0045490: pectin catabolic process	2.25E-02
149	GO:0009451: RNA modification	2.30E-02
150	GO:0030163: protein catabolic process	2.36E-02
151	GO:0071805: potassium ion transmembrane transport	2.57E-02
152	GO:0007166: cell surface receptor signaling pathway	2.57E-02
153	GO:0001666: response to hypoxia	2.79E-02
154	GO:0016126: sterol biosynthetic process	2.79E-02
155	GO:0009735: response to cytokinin	2.84E-02
156	GO:0042128: nitrate assimilation	3.02E-02
157	GO:0009416: response to light stimulus	3.17E-02
158	GO:0048481: plant ovule development	3.37E-02
159	GO:0009658: chloroplast organization	3.47E-02
160	GO:0009832: plant-type cell wall biogenesis	3.49E-02
161	GO:0006499: N-terminal protein myristoylation	3.62E-02
162	GO:0048527: lateral root development	3.74E-02
163	GO:0005975: carbohydrate metabolic process	4.43E-02
164	GO:0046777: protein autophosphorylation	4.59E-02
165	GO:0009640: photomorphogenesis	4.78E-02
166	GO:0009744: response to sucrose	4.78E-02
167	GO:0042546: cell wall biogenesis	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
2	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
3	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
4	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
5	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
6	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
7	GO:0008987: quinolinate synthetase A activity	0.00E+00
8	GO:0005528: FK506 binding	2.27E-08
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.41E-06
10	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	2.18E-04
11	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	2.18E-04
12	GO:0090422: thiamine pyrophosphate transporter activity	2.18E-04
13	GO:0019843: rRNA binding	4.42E-04
14	GO:0015929: hexosaminidase activity	4.86E-04
15	GO:0004563: beta-N-acetylhexosaminidase activity	4.86E-04
16	GO:0010291: carotene beta-ring hydroxylase activity	4.86E-04
17	GO:0003839: gamma-glutamylcyclotransferase activity	4.86E-04
18	GO:0004617: phosphoglycerate dehydrogenase activity	4.86E-04
19	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	4.86E-04
20	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.86E-04
21	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.86E-04
22	GO:0002161: aminoacyl-tRNA editing activity	7.90E-04
23	GO:0003935: GTP cyclohydrolase II activity	7.90E-04
24	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	7.90E-04
25	GO:0015462: ATPase-coupled protein transmembrane transporter activity	7.90E-04
26	GO:0016531: copper chaperone activity	7.90E-04
27	GO:0019829: cation-transporting ATPase activity	7.90E-04
28	GO:0016787: hydrolase activity	9.68E-04
29	GO:0001872: (1->3)-beta-D-glucan binding	1.13E-03
30	GO:0004506: squalene monooxygenase activity	1.50E-03
31	GO:0046527: glucosyltransferase activity	1.50E-03
32	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.50E-03
33	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.50E-03
34	GO:0046872: metal ion binding	1.63E-03
35	GO:0008374: O-acyltransferase activity	1.91E-03
36	GO:0042578: phosphoric ester hydrolase activity	2.35E-03
37	GO:2001070: starch binding	2.35E-03
38	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.35E-03
39	GO:0004332: fructose-bisphosphate aldolase activity	2.35E-03
40	GO:0051753: mannan synthase activity	2.83E-03
41	GO:0004559: alpha-mannosidase activity	2.83E-03
42	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.83E-03
43	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.83E-03
44	GO:0016168: chlorophyll binding	3.35E-03
45	GO:0003723: RNA binding	3.37E-03
46	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.75E-03
47	GO:0008236: serine-type peptidase activity	3.92E-03
48	GO:0004672: protein kinase activity	4.40E-03
49	GO:0005375: copper ion transmembrane transporter activity	4.42E-03
50	GO:0005381: iron ion transmembrane transporter activity	5.62E-03
51	GO:0008047: enzyme activator activity	6.25E-03
52	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.91E-03
53	GO:0035091: phosphatidylinositol binding	7.28E-03
54	GO:0000049: tRNA binding	7.60E-03
55	GO:0004565: beta-galactosidase activity	8.30E-03
56	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	8.30E-03
57	GO:0008081: phosphoric diester hydrolase activity	8.30E-03
58	GO:0031072: heat shock protein binding	8.30E-03
59	GO:0008266: poly(U) RNA binding	9.03E-03
60	GO:0003774: motor activity	9.03E-03
61	GO:0031409: pigment binding	1.06E-02
62	GO:0016491: oxidoreductase activity	1.16E-02
63	GO:0015079: potassium ion transmembrane transporter activity	1.22E-02
64	GO:0004176: ATP-dependent peptidase activity	1.30E-02
65	GO:0033612: receptor serine/threonine kinase binding	1.30E-02
66	GO:0030570: pectate lyase activity	1.48E-02
67	GO:0016760: cellulose synthase (UDP-forming) activity	1.48E-02
68	GO:0022891: substrate-specific transmembrane transporter activity	1.48E-02
69	GO:0004812: aminoacyl-tRNA ligase activity	1.66E-02
70	GO:0004519: endonuclease activity	1.72E-02
71	GO:0016829: lyase activity	1.76E-02
72	GO:0004674: protein serine/threonine kinase activity	1.80E-02
73	GO:0004252: serine-type endopeptidase activity	1.80E-02
74	GO:0005524: ATP binding	1.92E-02
75	GO:0050662: coenzyme binding	1.95E-02
76	GO:0004518: nuclease activity	2.25E-02
77	GO:0008017: microtubule binding	2.35E-02
78	GO:0016597: amino acid binding	2.68E-02
79	GO:0005215: transporter activity	2.80E-02
80	GO:0030247: polysaccharide binding	3.14E-02
81	GO:0015238: drug transmembrane transporter activity	3.49E-02
82	GO:0003993: acid phosphatase activity	4.12E-02
83	GO:0051539: 4 iron, 4 sulfur cluster binding	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0043233: organelle lumen	0.00E+00
2	GO:0009571: proplastid stroma	0.00E+00
3	GO:0009570: chloroplast stroma	8.74E-12
4	GO:0009507: chloroplast	9.99E-12
5	GO:0009543: chloroplast thylakoid lumen	3.16E-10
6	GO:0009535: chloroplast thylakoid membrane	5.14E-08
7	GO:0009579: thylakoid	3.34E-06
8	GO:0009941: chloroplast envelope	8.15E-05
9	GO:0031977: thylakoid lumen	8.72E-05
10	GO:0009534: chloroplast thylakoid	1.67E-04
11	GO:0000428: DNA-directed RNA polymerase complex	2.18E-04
12	GO:0009344: nitrite reductase complex [NAD(P)H]	2.18E-04
13	GO:0009782: photosystem I antenna complex	2.18E-04
14	GO:0030529: intracellular ribonucleoprotein complex	3.47E-04
15	GO:0005782: peroxisomal matrix	7.90E-04
16	GO:0009654: photosystem II oxygen evolving complex	1.01E-03
17	GO:0005886: plasma membrane	2.01E-03
18	GO:0019898: extrinsic component of membrane	2.06E-03
19	GO:0010287: plastoglobule	2.55E-03
20	GO:0009505: plant-type cell wall	3.22E-03
21	GO:0009533: chloroplast stromal thylakoid	3.33E-03
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.00E-03
23	GO:0008180: COP9 signalosome	5.00E-03
24	GO:0046658: anchored component of plasma membrane	5.86E-03
25	GO:0016459: myosin complex	6.25E-03
26	GO:0055028: cortical microtubule	6.25E-03
27	GO:0032040: small-subunit processome	7.60E-03
28	GO:0000312: plastid small ribosomal subunit	9.03E-03
29	GO:0030095: chloroplast photosystem II	9.03E-03
30	GO:0030076: light-harvesting complex	9.79E-03
31	GO:0009532: plastid stroma	1.30E-02
32	GO:0005743: mitochondrial inner membrane	1.41E-02
33	GO:0005871: kinesin complex	1.66E-02
34	GO:0043231: intracellular membrane-bounded organelle	1.75E-02
35	GO:0009523: photosystem II	2.05E-02
36	GO:0009295: nucleoid	2.57E-02
37	GO:0019005: SCF ubiquitin ligase complex	3.37E-02
38	GO:0031969: chloroplast membrane	4.30E-02