Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G16080

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
2GO:0061635: regulation of protein complex stability0.00E+00
3GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:0017038: protein import0.00E+00
6GO:0090627: plant epidermal cell differentiation0.00E+00
7GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
8GO:0090042: tubulin deacetylation0.00E+00
9GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
10GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
11GO:0009773: photosynthetic electron transport in photosystem I1.30E-08
12GO:0006000: fructose metabolic process3.81E-08
13GO:0071482: cellular response to light stimulus1.89E-07
14GO:0010205: photoinhibition4.61E-07
15GO:0015994: chlorophyll metabolic process5.35E-07
16GO:0006094: gluconeogenesis1.84E-06
17GO:0009913: epidermal cell differentiation2.33E-06
18GO:0016122: xanthophyll metabolic process4.84E-06
19GO:0030388: fructose 1,6-bisphosphate metabolic process4.84E-06
20GO:0006002: fructose 6-phosphate metabolic process1.41E-05
21GO:0010206: photosystem II repair1.94E-05
22GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.81E-05
23GO:0015979: photosynthesis5.29E-05
24GO:0009767: photosynthetic electron transport chain6.62E-05
25GO:0006546: glycine catabolic process6.79E-05
26GO:0016120: carotene biosynthetic process1.07E-04
27GO:0042549: photosystem II stabilization1.54E-04
28GO:0010196: nonphotochemical quenching2.73E-04
29GO:0000476: maturation of 4.5S rRNA3.27E-04
30GO:0019646: aerobic electron transport chain3.27E-04
31GO:0000967: rRNA 5'-end processing3.27E-04
32GO:0043953: protein transport by the Tat complex3.27E-04
33GO:0043266: regulation of potassium ion transport3.27E-04
34GO:0010480: microsporocyte differentiation3.27E-04
35GO:0031338: regulation of vesicle fusion3.27E-04
36GO:0000481: maturation of 5S rRNA3.27E-04
37GO:0065002: intracellular protein transmembrane transport3.27E-04
38GO:2000021: regulation of ion homeostasis3.27E-04
39GO:0043609: regulation of carbon utilization3.27E-04
40GO:0010028: xanthophyll cycle3.27E-04
41GO:0034337: RNA folding3.27E-04
42GO:0000305: response to oxygen radical3.27E-04
43GO:0048507: meristem development5.07E-04
44GO:0006096: glycolytic process5.82E-04
45GO:0008152: metabolic process6.46E-04
46GO:0009915: phloem sucrose loading7.13E-04
47GO:0035304: regulation of protein dephosphorylation7.13E-04
48GO:1900871: chloroplast mRNA modification7.13E-04
49GO:0010270: photosystem II oxygen evolving complex assembly7.13E-04
50GO:0034470: ncRNA processing7.13E-04
51GO:0005983: starch catabolic process9.18E-04
52GO:0005986: sucrose biosynthetic process1.04E-03
53GO:0055114: oxidation-reduction process1.14E-03
54GO:0006518: peptide metabolic process1.16E-03
55GO:0090630: activation of GTPase activity1.16E-03
56GO:2001295: malonyl-CoA biosynthetic process1.16E-03
57GO:0010207: photosystem II assembly1.17E-03
58GO:0019253: reductive pentose-phosphate cycle1.17E-03
59GO:0009735: response to cytokinin1.38E-03
60GO:0045454: cell redox homeostasis1.50E-03
61GO:0043572: plastid fission1.66E-03
62GO:0055070: copper ion homeostasis1.66E-03
63GO:0051639: actin filament network formation1.66E-03
64GO:0009644: response to high light intensity2.09E-03
65GO:0045727: positive regulation of translation2.23E-03
66GO:0006749: glutathione metabolic process2.23E-03
67GO:0010021: amylopectin biosynthetic process2.23E-03
68GO:0010109: regulation of photosynthesis2.23E-03
69GO:0051764: actin crosslink formation2.23E-03
70GO:0019464: glycine decarboxylation via glycine cleavage system2.23E-03
71GO:0006364: rRNA processing2.77E-03
72GO:0048497: maintenance of floral organ identity2.84E-03
73GO:0035434: copper ion transmembrane transport2.84E-03
74GO:0006461: protein complex assembly2.84E-03
75GO:0009658: chloroplast organization3.44E-03
76GO:0006828: manganese ion transport3.51E-03
77GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.51E-03
78GO:0000741: karyogamy3.51E-03
79GO:0010304: PSII associated light-harvesting complex II catabolic process3.51E-03
80GO:0006751: glutathione catabolic process3.51E-03
81GO:0010256: endomembrane system organization3.51E-03
82GO:0000470: maturation of LSU-rRNA3.51E-03
83GO:0048825: cotyledon development3.68E-03
84GO:0019252: starch biosynthetic process3.68E-03
85GO:0010067: procambium histogenesis4.23E-03
86GO:0042372: phylloquinone biosynthetic process4.23E-03
87GO:0009942: longitudinal axis specification4.23E-03
88GO:0010189: vitamin E biosynthetic process4.23E-03
89GO:0009854: oxidative photosynthetic carbon pathway4.23E-03
90GO:0030163: protein catabolic process4.49E-03
91GO:0048437: floral organ development4.99E-03
92GO:1900057: positive regulation of leaf senescence4.99E-03
93GO:0009645: response to low light intensity stimulus4.99E-03
94GO:0009772: photosynthetic electron transport in photosystem II4.99E-03
95GO:0010027: thylakoid membrane organization5.70E-03
96GO:0008610: lipid biosynthetic process5.80E-03
97GO:0005978: glycogen biosynthetic process5.80E-03
98GO:0030091: protein repair5.80E-03
99GO:0006605: protein targeting5.80E-03
100GO:0032508: DNA duplex unwinding5.80E-03
101GO:0010492: maintenance of shoot apical meristem identity5.80E-03
102GO:0048564: photosystem I assembly5.80E-03
103GO:0009657: plastid organization6.65E-03
104GO:0032544: plastid translation6.65E-03
105GO:0015995: chlorophyll biosynthetic process6.71E-03
106GO:0018298: protein-chromophore linkage7.44E-03
107GO:0006098: pentose-phosphate shunt7.54E-03
108GO:0090305: nucleic acid phosphodiester bond hydrolysis7.54E-03
109GO:0000373: Group II intron splicing7.54E-03
110GO:0006633: fatty acid biosynthetic process7.73E-03
111GO:0006779: porphyrin-containing compound biosynthetic process8.48E-03
112GO:0007623: circadian rhythm8.71E-03
113GO:0006782: protoporphyrinogen IX biosynthetic process9.45E-03
114GO:0006816: calcium ion transport1.05E-02
115GO:0019684: photosynthesis, light reaction1.05E-02
116GO:0009807: lignan biosynthetic process1.05E-02
117GO:1903507: negative regulation of nucleic acid-templated transcription1.05E-02
118GO:0009750: response to fructose1.05E-02
119GO:0018119: peptidyl-cysteine S-nitrosylation1.05E-02
120GO:0048229: gametophyte development1.05E-02
121GO:0000038: very long-chain fatty acid metabolic process1.05E-02
122GO:0006631: fatty acid metabolic process1.12E-02
123GO:0009409: response to cold1.20E-02
124GO:0010102: lateral root morphogenesis1.26E-02
125GO:0018107: peptidyl-threonine phosphorylation1.26E-02
126GO:0009718: anthocyanin-containing compound biosynthetic process1.26E-02
127GO:0010075: regulation of meristem growth1.26E-02
128GO:0010020: chloroplast fission1.37E-02
129GO:0010223: secondary shoot formation1.37E-02
130GO:0009266: response to temperature stimulus1.37E-02
131GO:0009934: regulation of meristem structural organization1.37E-02
132GO:0006810: transport1.40E-02
133GO:0031347: regulation of defense response1.48E-02
134GO:0005985: sucrose metabolic process1.49E-02
135GO:0006636: unsaturated fatty acid biosynthetic process1.61E-02
136GO:0051017: actin filament bundle assembly1.73E-02
137GO:0016575: histone deacetylation1.86E-02
138GO:0006418: tRNA aminoacylation for protein translation1.86E-02
139GO:0009768: photosynthesis, light harvesting in photosystem I1.86E-02
140GO:0061077: chaperone-mediated protein folding1.99E-02
141GO:0006979: response to oxidative stress2.04E-02
142GO:0009416: response to light stimulus2.05E-02
143GO:2000022: regulation of jasmonic acid mediated signaling pathway2.12E-02
144GO:0009686: gibberellin biosynthetic process2.25E-02
145GO:0001944: vasculature development2.25E-02
146GO:0010089: xylem development2.39E-02
147GO:0018105: peptidyl-serine phosphorylation2.42E-02
148GO:0016117: carotenoid biosynthetic process2.53E-02
149GO:0042631: cellular response to water deprivation2.68E-02
150GO:0042335: cuticle development2.68E-02
151GO:0010051: xylem and phloem pattern formation2.68E-02
152GO:0048653: anther development2.68E-02
153GO:0010305: leaf vascular tissue pattern formation2.82E-02
154GO:0010197: polar nucleus fusion2.82E-02
155GO:0010268: brassinosteroid homeostasis2.82E-02
156GO:0009646: response to absence of light2.97E-02
157GO:0032259: methylation3.08E-02
158GO:0009845: seed germination3.18E-02
159GO:0016132: brassinosteroid biosynthetic process3.28E-02
160GO:0042744: hydrogen peroxide catabolic process3.35E-02
161GO:0016032: viral process3.44E-02
162GO:0010090: trichome morphogenesis3.60E-02
163GO:0009567: double fertilization forming a zygote and endosperm3.76E-02
164GO:0016125: sterol metabolic process3.76E-02
165GO:0071805: potassium ion transmembrane transport3.92E-02
166GO:0005975: carbohydrate metabolic process4.04E-02
167GO:0001666: response to hypoxia4.26E-02
168GO:0016126: sterol biosynthetic process4.26E-02
169GO:0016311: dephosphorylation4.96E-02
RankGO TermAdjusted P value
1GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
2GO:0046422: violaxanthin de-epoxidase activity0.00E+00
3GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
4GO:0051721: protein phosphatase 2A binding0.00E+00
5GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
6GO:0009976: tocopherol cyclase activity0.00E+00
7GO:0042903: tubulin deacetylase activity0.00E+00
8GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
9GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
12GO:0043014: alpha-tubulin binding0.00E+00
13GO:0008465: glycerate dehydrogenase activity0.00E+00
14GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
15GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
16GO:0045436: lycopene beta cyclase activity0.00E+00
17GO:0005528: FK506 binding1.13E-07
18GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.84E-06
19GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.83E-05
20GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor6.79E-05
21GO:0008266: poly(U) RNA binding8.01E-05
22GO:0016787: hydrolase activity1.52E-04
23GO:2001070: starch binding1.54E-04
24GO:0004332: fructose-bisphosphate aldolase activity1.54E-04
25GO:0051777: ent-kaurenoate oxidase activity3.27E-04
26GO:0050308: sugar-phosphatase activity3.27E-04
27GO:0004856: xylulokinase activity3.27E-04
28GO:0009496: plastoquinol--plastocyanin reductase activity3.27E-04
29GO:0010242: oxygen evolving activity3.27E-04
30GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.27E-04
31GO:0019203: carbohydrate phosphatase activity3.27E-04
32GO:0045485: omega-6 fatty acid desaturase activity3.27E-04
33GO:0050139: nicotinate-N-glucosyltransferase activity3.27E-04
34GO:0019172: glyoxalase III activity7.13E-04
35GO:0004362: glutathione-disulfide reductase activity7.13E-04
36GO:0010283: pinoresinol reductase activity7.13E-04
37GO:0047746: chlorophyllase activity7.13E-04
38GO:0016868: intramolecular transferase activity, phosphotransferases7.13E-04
39GO:0004618: phosphoglycerate kinase activity7.13E-04
40GO:0003839: gamma-glutamylcyclotransferase activity7.13E-04
41GO:0009977: proton motive force dependent protein transmembrane transporter activity7.13E-04
42GO:0004047: aminomethyltransferase activity7.13E-04
43GO:0033201: alpha-1,4-glucan synthase activity7.13E-04
44GO:0004222: metalloendopeptidase activity1.15E-03
45GO:0016531: copper chaperone activity1.16E-03
46GO:0004373: glycogen (starch) synthase activity1.16E-03
47GO:0019829: cation-transporting ATPase activity1.16E-03
48GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.16E-03
49GO:0002161: aminoacyl-tRNA editing activity1.16E-03
50GO:0008253: 5'-nucleotidase activity1.16E-03
51GO:0004148: dihydrolipoyl dehydrogenase activity1.16E-03
52GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.16E-03
53GO:0004075: biotin carboxylase activity1.16E-03
54GO:0030267: glyoxylate reductase (NADP) activity1.16E-03
55GO:0015462: ATPase-coupled protein transmembrane transporter activity1.16E-03
56GO:0003954: NADH dehydrogenase activity1.61E-03
57GO:0004375: glycine dehydrogenase (decarboxylating) activity1.66E-03
58GO:0019201: nucleotide kinase activity1.66E-03
59GO:0048487: beta-tubulin binding1.66E-03
60GO:0015079: potassium ion transmembrane transporter activity1.78E-03
61GO:0004176: ATP-dependent peptidase activity1.95E-03
62GO:0004506: squalene monooxygenase activity2.23E-03
63GO:0009011: starch synthase activity2.23E-03
64GO:0008878: glucose-1-phosphate adenylyltransferase activity2.23E-03
65GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.23E-03
66GO:0016773: phosphotransferase activity, alcohol group as acceptor2.84E-03
67GO:0017137: Rab GTPase binding2.84E-03
68GO:0003989: acetyl-CoA carboxylase activity2.84E-03
69GO:0004462: lactoylglutathione lyase activity3.51E-03
70GO:0042578: phosphoric ester hydrolase activity3.51E-03
71GO:0048038: quinone binding3.94E-03
72GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.23E-03
73GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.23E-03
74GO:0004017: adenylate kinase activity4.23E-03
75GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.23E-03
76GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.23E-03
77GO:0050660: flavin adenine dinucleotide binding4.29E-03
78GO:0046872: metal ion binding4.68E-03
79GO:0008237: metallopeptidase activity5.07E-03
80GO:0004033: aldo-keto reductase (NADP) activity5.80E-03
81GO:0043022: ribosome binding5.80E-03
82GO:0016168: chlorophyll binding6.03E-03
83GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.65E-03
84GO:0005375: copper ion transmembrane transporter activity6.65E-03
85GO:0008236: serine-type peptidase activity7.07E-03
86GO:0008138: protein tyrosine/serine/threonine phosphatase activity7.54E-03
87GO:0005384: manganese ion transmembrane transporter activity8.48E-03
88GO:0015386: potassium:proton antiporter activity1.05E-02
89GO:0000049: tRNA binding1.15E-02
90GO:0042802: identical protein binding1.18E-02
91GO:0004565: beta-galactosidase activity1.26E-02
92GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.26E-02
93GO:0004022: alcohol dehydrogenase (NAD) activity1.26E-02
94GO:0015095: magnesium ion transmembrane transporter activity1.26E-02
95GO:0008168: methyltransferase activity1.45E-02
96GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.61E-02
97GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.61E-02
98GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.61E-02
99GO:0031409: pigment binding1.61E-02
100GO:0003714: transcription corepressor activity1.73E-02
101GO:0004407: histone deacetylase activity1.73E-02
102GO:0033612: receptor serine/threonine kinase binding1.99E-02
103GO:0022891: substrate-specific transmembrane transporter activity2.25E-02
104GO:0005524: ATP binding2.36E-02
105GO:0004812: aminoacyl-tRNA ligase activity2.53E-02
106GO:0019843: rRNA binding2.94E-02
107GO:0050662: coenzyme binding2.97E-02
108GO:0016853: isomerase activity2.97E-02
109GO:0016491: oxidoreductase activity3.20E-02
110GO:0004252: serine-type endopeptidase activity3.27E-02
111GO:0004518: nuclease activity3.44E-02
112GO:0051015: actin filament binding3.60E-02
113GO:0008483: transaminase activity3.92E-02
114GO:0009931: calcium-dependent protein serine/threonine kinase activity4.61E-02
115GO:0004721: phosphoprotein phosphatase activity4.78E-02
116GO:0004683: calmodulin-dependent protein kinase activity4.78E-02
117GO:0008289: lipid binding4.87E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
3GO:0009507: chloroplast4.02E-52
4GO:0009534: chloroplast thylakoid4.90E-32
5GO:0009535: chloroplast thylakoid membrane5.79E-26
6GO:0009941: chloroplast envelope2.15E-24
7GO:0009570: chloroplast stroma4.56E-21
8GO:0009579: thylakoid3.20E-12
9GO:0009543: chloroplast thylakoid lumen7.77E-12
10GO:0010287: plastoglobule3.54E-09
11GO:0030095: chloroplast photosystem II4.27E-08
12GO:0031977: thylakoid lumen5.02E-08
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.01E-07
14GO:0031304: intrinsic component of mitochondrial inner membrane4.84E-06
15GO:0009533: chloroplast stromal thylakoid6.48E-06
16GO:0009706: chloroplast inner membrane1.15E-04
17GO:0009782: photosystem I antenna complex3.27E-04
18GO:0009344: nitrite reductase complex [NAD(P)H]3.27E-04
19GO:0031361: integral component of thylakoid membrane3.27E-04
20GO:0009523: photosystem II4.19E-04
21GO:0031969: chloroplast membrane1.09E-03
22GO:0033281: TAT protein transport complex1.16E-03
23GO:0032432: actin filament bundle1.66E-03
24GO:0005960: glycine cleavage complex1.66E-03
25GO:0009654: photosystem II oxygen evolving complex1.78E-03
26GO:0042651: thylakoid membrane1.78E-03
27GO:0048046: apoplast2.17E-03
28GO:0009512: cytochrome b6f complex2.84E-03
29GO:0019898: extrinsic component of membrane3.68E-03
30GO:0010319: stromule5.07E-03
31GO:0009501: amyloplast5.80E-03
32GO:0008180: COP9 signalosome7.54E-03
33GO:0042644: chloroplast nucleoid7.54E-03
34GO:0005884: actin filament1.05E-02
35GO:0032040: small-subunit processome1.15E-02
36GO:0009508: plastid chromosome1.26E-02
37GO:0030076: light-harvesting complex1.49E-02
38GO:0016021: integral component of membrane3.34E-02
39GO:0009295: nucleoid3.92E-02
40GO:0009705: plant-type vacuole membrane4.05E-02
41GO:0030529: intracellular ribonucleoprotein complex4.26E-02
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Gene type



Gene DE type