co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G14890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
3	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
4	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0015995: chlorophyll biosynthetic process	5.41E-09
7	GO:0015979: photosynthesis	1.16E-06
8	GO:0009773: photosynthetic electron transport in photosystem I	6.06E-06
9	GO:0016123: xanthophyll biosynthetic process	2.66E-05
10	GO:0006655: phosphatidylglycerol biosynthetic process	3.99E-05
11	GO:0006412: translation	4.27E-05
12	GO:0000413: protein peptidyl-prolyl isomerization	5.71E-05
13	GO:0042254: ribosome biogenesis	7.66E-05
14	GO:1904964: positive regulation of phytol biosynthetic process	1.42E-04
15	GO:0071461: cellular response to redox state	1.42E-04
16	GO:0060627: regulation of vesicle-mediated transport	1.42E-04
17	GO:0043489: RNA stabilization	1.42E-04
18	GO:1904966: positive regulation of vitamin E biosynthetic process	1.42E-04
19	GO:0019684: photosynthesis, light reaction	2.49E-04
20	GO:0016024: CDP-diacylglycerol biosynthetic process	2.87E-04
21	GO:0034599: cellular response to oxidative stress	3.24E-04
22	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.25E-04
23	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.25E-04
24	GO:0080005: photosystem stoichiometry adjustment	3.25E-04
25	GO:0018026: peptidyl-lysine monomethylation	3.25E-04
26	GO:0090391: granum assembly	5.33E-04
27	GO:0009735: response to cytokinin	6.16E-04
28	GO:0043572: plastid fission	7.63E-04
29	GO:2001141: regulation of RNA biosynthetic process	7.63E-04
30	GO:0016117: carotenoid biosynthetic process	8.61E-04
31	GO:0019464: glycine decarboxylation via glycine cleavage system	1.01E-03
32	GO:0009765: photosynthesis, light harvesting	1.01E-03
33	GO:0006546: glycine catabolic process	1.01E-03
34	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.01E-03
35	GO:0000302: response to reactive oxygen species	1.22E-03
36	GO:0034052: positive regulation of plant-type hypersensitive response	1.28E-03
37	GO:0016120: carotene biosynthetic process	1.28E-03
38	GO:0010027: thylakoid membrane organization	1.74E-03
39	GO:0010189: vitamin E biosynthetic process	1.88E-03
40	GO:0010555: response to mannitol	1.88E-03
41	GO:0071470: cellular response to osmotic stress	1.88E-03
42	GO:0010411: xyloglucan metabolic process	2.05E-03
43	GO:0055114: oxidation-reduction process	2.17E-03
44	GO:0009395: phospholipid catabolic process	2.21E-03
45	GO:1900056: negative regulation of leaf senescence	2.21E-03
46	GO:0010196: nonphotochemical quenching	2.21E-03
47	GO:0006400: tRNA modification	2.21E-03
48	GO:0048564: photosystem I assembly	2.56E-03
49	GO:0009819: drought recovery	2.56E-03
50	GO:0009642: response to light intensity	2.56E-03
51	GO:0042255: ribosome assembly	2.56E-03
52	GO:0006353: DNA-templated transcription, termination	2.56E-03
53	GO:0043068: positive regulation of programmed cell death	2.56E-03
54	GO:0071482: cellular response to light stimulus	2.93E-03
55	GO:0032544: plastid translation	2.93E-03
56	GO:0030001: metal ion transport	3.26E-03
57	GO:0009658: chloroplast organization	3.30E-03
58	GO:0006754: ATP biosynthetic process	3.31E-03
59	GO:0010206: photosystem II repair	3.31E-03
60	GO:0006783: heme biosynthetic process	3.31E-03
61	GO:0010205: photoinhibition	3.71E-03
62	GO:0006779: porphyrin-containing compound biosynthetic process	3.71E-03
63	GO:0042546: cell wall biogenesis	3.83E-03
64	GO:0006782: protoporphyrinogen IX biosynthetic process	4.12E-03
65	GO:0009089: lysine biosynthetic process via diaminopimelate	4.55E-03
66	GO:0006352: DNA-templated transcription, initiation	4.55E-03
67	GO:0009767: photosynthetic electron transport chain	5.45E-03
68	GO:0010628: positive regulation of gene expression	5.45E-03
69	GO:0010020: chloroplast fission	5.92E-03
70	GO:0010207: photosystem II assembly	5.92E-03
71	GO:0006636: unsaturated fatty acid biosynthetic process	6.91E-03
72	GO:0019344: cysteine biosynthetic process	7.42E-03
73	GO:0016998: cell wall macromolecule catabolic process	8.49E-03
74	GO:0009814: defense response, incompatible interaction	9.05E-03
75	GO:0006012: galactose metabolic process	9.62E-03
76	GO:0042744: hydrogen peroxide catabolic process	1.00E-02
77	GO:0009306: protein secretion	1.02E-02
78	GO:0006633: fatty acid biosynthetic process	1.11E-02
79	GO:0008033: tRNA processing	1.14E-02
80	GO:0009451: RNA modification	1.25E-02
81	GO:0032502: developmental process	1.46E-02
82	GO:0008380: RNA splicing	1.46E-02
83	GO:0009416: response to light stimulus	1.47E-02
84	GO:0016125: sterol metabolic process	1.60E-02
85	GO:0006508: proteolysis	1.74E-02
86	GO:0016126: sterol biosynthetic process	1.81E-02
87	GO:0009627: systemic acquired resistance	1.96E-02
88	GO:0006457: protein folding	2.04E-02
89	GO:0009817: defense response to fungus, incompatible interaction	2.19E-02
90	GO:0018298: protein-chromophore linkage	2.19E-02
91	GO:0009407: toxin catabolic process	2.34E-02
92	GO:0007568: aging	2.42E-02
93	GO:0009631: cold acclimation	2.42E-02
94	GO:0045087: innate immune response	2.59E-02
95	GO:0045454: cell redox homeostasis	2.81E-02
96	GO:0032259: methylation	3.31E-02
97	GO:0009793: embryo development ending in seed dormancy	3.37E-02
98	GO:0009636: response to toxic substance	3.37E-02
99	GO:0042742: defense response to bacterium	3.57E-02
100	GO:0006397: mRNA processing	3.61E-02
101	GO:0042538: hyperosmotic salinity response	3.65E-02
102	GO:0006486: protein glycosylation	3.83E-02
103	GO:0051603: proteolysis involved in cellular protein catabolic process	3.93E-02
104	GO:0009626: plant-type hypersensitive response	4.52E-02
105	GO:0042545: cell wall modification	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
4	GO:0004496: mevalonate kinase activity	0.00E+00
5	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
6	GO:0045550: geranylgeranyl reductase activity	0.00E+00
7	GO:0016851: magnesium chelatase activity	2.07E-08
8	GO:0019843: rRNA binding	6.16E-07
9	GO:0003735: structural constituent of ribosome	3.20E-05
10	GO:0004130: cytochrome-c peroxidase activity	3.99E-05
11	GO:0051920: peroxiredoxin activity	5.62E-05
12	GO:0016209: antioxidant activity	9.72E-05
13	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.42E-04
14	GO:0045485: omega-6 fatty acid desaturase activity	1.42E-04
15	GO:0008883: glutamyl-tRNA reductase activity	3.25E-04
16	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	3.25E-04
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.18E-04
18	GO:0004601: peroxidase activity	5.59E-04
19	GO:0043023: ribosomal large subunit binding	7.63E-04
20	GO:0008097: 5S rRNA binding	7.63E-04
21	GO:0004375: glycine dehydrogenase (decarboxylating) activity	7.63E-04
22	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.63E-04
23	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.01E-03
24	GO:0016279: protein-lysine N-methyltransferase activity	1.01E-03
25	GO:0001053: plastid sigma factor activity	1.01E-03
26	GO:0004045: aminoacyl-tRNA hydrolase activity	1.01E-03
27	GO:0016987: sigma factor activity	1.01E-03
28	GO:1990137: plant seed peroxidase activity	1.01E-03
29	GO:0043495: protein anchor	1.01E-03
30	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.22E-03
31	GO:0008237: metallopeptidase activity	1.56E-03
32	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.57E-03
33	GO:0016688: L-ascorbate peroxidase activity	1.57E-03
34	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.88E-03
35	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.05E-03
36	GO:0019899: enzyme binding	2.21E-03
37	GO:0004222: metalloendopeptidase activity	2.50E-03
38	GO:0004034: aldose 1-epimerase activity	2.56E-03
39	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.31E-03
40	GO:0047372: acylglycerol lipase activity	4.55E-03
41	GO:0008378: galactosyltransferase activity	4.99E-03
42	GO:0003690: double-stranded DNA binding	5.12E-03
43	GO:0008266: poly(U) RNA binding	5.92E-03
44	GO:0043424: protein histidine kinase binding	7.95E-03
45	GO:0004176: ATP-dependent peptidase activity	8.49E-03
46	GO:0005509: calcium ion binding	8.55E-03
47	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	9.05E-03
48	GO:0022891: substrate-specific transmembrane transporter activity	9.62E-03
49	GO:0003727: single-stranded RNA binding	1.02E-02
50	GO:0016887: ATPase activity	1.24E-02
51	GO:0016853: isomerase activity	1.26E-02
52	GO:0003723: RNA binding	1.29E-02
53	GO:0019901: protein kinase binding	1.33E-02
54	GO:0016491: oxidoreductase activity	1.46E-02
55	GO:0016791: phosphatase activity	1.60E-02
56	GO:0003729: mRNA binding	1.76E-02
57	GO:0005515: protein binding	1.85E-02
58	GO:0016168: chlorophyll binding	1.88E-02
59	GO:0016788: hydrolase activity, acting on ester bonds	1.93E-02
60	GO:0008236: serine-type peptidase activity	2.11E-02
61	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.19E-02
62	GO:0003993: acid phosphatase activity	2.67E-02
63	GO:0050661: NADP binding	2.84E-02
64	GO:0051539: 4 iron, 4 sulfur cluster binding	2.84E-02
65	GO:0004871: signal transducer activity	2.94E-02
66	GO:0004364: glutathione transferase activity	3.01E-02
67	GO:0004185: serine-type carboxypeptidase activity	3.10E-02
68	GO:0051537: 2 iron, 2 sulfur cluster binding	3.28E-02
69	GO:0009055: electron carrier activity	3.71E-02
70	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.83E-02
71	GO:0045330: aspartyl esterase activity	4.12E-02
72	GO:0030599: pectinesterase activity	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009507: chloroplast	1.15E-38
3	GO:0009570: chloroplast stroma	1.63E-22
4	GO:0009535: chloroplast thylakoid membrane	1.74E-20
5	GO:0009579: thylakoid	2.78E-16
6	GO:0009941: chloroplast envelope	6.34E-16
7	GO:0009534: chloroplast thylakoid	7.44E-15
8	GO:0009543: chloroplast thylakoid lumen	4.66E-13
9	GO:0031977: thylakoid lumen	1.22E-11
10	GO:0010007: magnesium chelatase complex	4.23E-09
11	GO:0031969: chloroplast membrane	7.32E-07
12	GO:0009654: photosystem II oxygen evolving complex	2.49E-05
13	GO:0009533: chloroplast stromal thylakoid	7.52E-05
14	GO:0019898: extrinsic component of membrane	7.99E-05
15	GO:0009706: chloroplast inner membrane	1.10E-04
16	GO:0009344: nitrite reductase complex [NAD(P)H]	1.42E-04
17	GO:0009515: granal stacked thylakoid	1.42E-04
18	GO:0005840: ribosome	1.47E-04
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.50E-04
20	GO:0030095: chloroplast photosystem II	3.70E-04
21	GO:0042651: thylakoid membrane	5.65E-04
22	GO:0005960: glycine cleavage complex	7.63E-04
23	GO:0030529: intracellular ribonucleoprotein complex	1.74E-03
24	GO:0048046: apoplast	2.50E-03
25	GO:0005811: lipid particle	2.93E-03
26	GO:0000311: plastid large ribosomal subunit	4.99E-03
27	GO:0043234: protein complex	6.91E-03
28	GO:0010287: plastoglobule	8.35E-03
29	GO:0015935: small ribosomal subunit	8.49E-03
30	GO:0009536: plastid	1.32E-02
31	GO:0009523: photosystem II	1.33E-02
32	GO:0005778: peroxisomal membrane	1.67E-02
33	GO:0010319: stromule	1.67E-02
34	GO:0005618: cell wall	2.67E-02
35	GO:0016020: membrane	4.87E-02