Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G12360

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009991: response to extracellular stimulus0.00E+00
2GO:0071327: cellular response to trehalose stimulus0.00E+00
3GO:1900367: positive regulation of defense response to insect0.00E+00
4GO:0006468: protein phosphorylation8.98E-13
5GO:0007166: cell surface receptor signaling pathway1.19E-08
6GO:0060548: negative regulation of cell death2.16E-05
7GO:0080142: regulation of salicylic acid biosynthetic process2.16E-05
8GO:0046777: protein autophosphorylation2.52E-05
9GO:0042742: defense response to bacterium4.28E-05
10GO:0010942: positive regulation of cell death5.21E-05
11GO:0070370: cellular heat acclimation9.72E-05
12GO:0006805: xenobiotic metabolic process1.67E-04
13GO:1901183: positive regulation of camalexin biosynthetic process1.67E-04
14GO:0060862: negative regulation of floral organ abscission1.67E-04
15GO:0080151: positive regulation of salicylic acid mediated signaling pathway3.78E-04
16GO:0080185: effector dependent induction by symbiont of host immune response3.78E-04
17GO:0010618: aerenchyma formation3.78E-04
18GO:0006212: uracil catabolic process3.78E-04
19GO:0031349: positive regulation of defense response3.78E-04
20GO:0019483: beta-alanine biosynthetic process3.78E-04
21GO:1902000: homogentisate catabolic process3.78E-04
22GO:2000693: positive regulation of seed maturation3.78E-04
23GO:0019441: tryptophan catabolic process to kynurenine3.78E-04
24GO:0002221: pattern recognition receptor signaling pathway3.78E-04
25GO:0046740: transport of virus in host, cell to cell3.78E-04
26GO:0015914: phospholipid transport3.78E-04
27GO:0010150: leaf senescence4.05E-04
28GO:0006952: defense response4.44E-04
29GO:0034605: cellular response to heat4.63E-04
30GO:0042343: indole glucosinolate metabolic process5.19E-04
31GO:0070588: calcium ion transmembrane transport5.19E-04
32GO:0006517: protein deglycosylation6.19E-04
33GO:0009072: aromatic amino acid family metabolic process6.19E-04
34GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway6.19E-04
35GO:0055074: calcium ion homeostasis6.19E-04
36GO:1900140: regulation of seedling development6.19E-04
37GO:0010359: regulation of anion channel activity6.19E-04
38GO:0098542: defense response to other organism7.70E-04
39GO:2000022: regulation of jasmonic acid mediated signaling pathway8.40E-04
40GO:0031348: negative regulation of defense response8.40E-04
41GO:0048194: Golgi vesicle budding8.83E-04
42GO:0010071: root meristem specification8.83E-04
43GO:0070301: cellular response to hydrogen peroxide8.83E-04
44GO:0009399: nitrogen fixation8.83E-04
45GO:0072583: clathrin-dependent endocytosis8.83E-04
46GO:0071323: cellular response to chitin8.83E-04
47GO:0001676: long-chain fatty acid metabolic process8.83E-04
48GO:0009626: plant-type hypersensitive response1.09E-03
49GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.15E-03
50GO:0042631: cellular response to water deprivation1.15E-03
51GO:0010508: positive regulation of autophagy1.17E-03
52GO:0006542: glutamine biosynthetic process1.17E-03
53GO:0018344: protein geranylgeranylation1.48E-03
54GO:0010225: response to UV-C1.48E-03
55GO:0030041: actin filament polymerization1.48E-03
56GO:0046283: anthocyanin-containing compound metabolic process1.48E-03
57GO:0031365: N-terminal protein amino acid modification1.48E-03
58GO:0006891: intra-Golgi vesicle-mediated transport1.52E-03
59GO:0070814: hydrogen sulfide biosynthetic process1.83E-03
60GO:1902456: regulation of stomatal opening1.83E-03
61GO:0006751: glutathione catabolic process1.83E-03
62GO:0010310: regulation of hydrogen peroxide metabolic process2.19E-03
63GO:2000067: regulation of root morphogenesis2.19E-03
64GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.19E-03
65GO:0000911: cytokinesis by cell plate formation2.19E-03
66GO:0009612: response to mechanical stimulus2.19E-03
67GO:0010555: response to mannitol2.19E-03
68GO:0009816: defense response to bacterium, incompatible interaction2.30E-03
69GO:0009627: systemic acquired resistance2.43E-03
70GO:0043090: amino acid import2.58E-03
71GO:0010044: response to aluminum ion2.58E-03
72GO:0009817: defense response to fungus, incompatible interaction2.84E-03
73GO:0030162: regulation of proteolysis2.99E-03
74GO:0006491: N-glycan processing2.99E-03
75GO:0010078: maintenance of root meristem identity2.99E-03
76GO:0010492: maintenance of shoot apical meristem identity2.99E-03
77GO:0010468: regulation of gene expression3.17E-03
78GO:0009617: response to bacterium3.17E-03
79GO:0010119: regulation of stomatal movement3.27E-03
80GO:2000031: regulation of salicylic acid mediated signaling pathway3.41E-03
81GO:0007186: G-protein coupled receptor signaling pathway3.41E-03
82GO:0006367: transcription initiation from RNA polymerase II promoter3.41E-03
83GO:0010120: camalexin biosynthetic process3.41E-03
84GO:0010204: defense response signaling pathway, resistance gene-independent3.41E-03
85GO:0030968: endoplasmic reticulum unfolded protein response3.41E-03
86GO:0043562: cellular response to nitrogen levels3.41E-03
87GO:0046685: response to arsenic-containing substance3.86E-03
88GO:0051865: protein autoubiquitination3.86E-03
89GO:0006631: fatty acid metabolic process4.26E-03
90GO:1900426: positive regulation of defense response to bacterium4.33E-03
91GO:0048268: clathrin coat assembly4.33E-03
92GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway4.33E-03
93GO:2000280: regulation of root development4.33E-03
94GO:0009738: abscisic acid-activated signaling pathway4.46E-03
95GO:0051707: response to other organism4.61E-03
96GO:0010629: negative regulation of gene expression4.81E-03
97GO:0000103: sulfate assimilation4.81E-03
98GO:0043069: negative regulation of programmed cell death4.81E-03
99GO:0006970: response to osmotic stress4.84E-03
100GO:0072593: reactive oxygen species metabolic process5.32E-03
101GO:0009750: response to fructose5.32E-03
102GO:0030148: sphingolipid biosynthetic process5.32E-03
103GO:0012501: programmed cell death5.84E-03
104GO:0002213: defense response to insect5.84E-03
105GO:0010105: negative regulation of ethylene-activated signaling pathway5.84E-03
106GO:0010200: response to chitin6.05E-03
107GO:0010102: lateral root morphogenesis6.38E-03
108GO:0006807: nitrogen compound metabolic process6.38E-03
109GO:0044550: secondary metabolite biosynthetic process6.45E-03
110GO:0009887: animal organ morphogenesis6.93E-03
111GO:0010053: root epidermal cell differentiation7.50E-03
112GO:0010167: response to nitrate7.50E-03
113GO:0006886: intracellular protein transport7.58E-03
114GO:0018105: peptidyl-serine phosphorylation9.10E-03
115GO:0016575: histone deacetylation9.33E-03
116GO:0006874: cellular calcium ion homeostasis9.33E-03
117GO:0010227: floral organ abscission1.13E-02
118GO:0071215: cellular response to abscisic acid stimulus1.13E-02
119GO:0009625: response to insect1.13E-02
120GO:0010091: trichome branching1.20E-02
121GO:0009845: seed germination1.20E-02
122GO:0042391: regulation of membrane potential1.34E-02
123GO:0080022: primary root development1.34E-02
124GO:0000413: protein peptidyl-prolyl isomerization1.34E-02
125GO:0071472: cellular response to salt stress1.41E-02
126GO:0010154: fruit development1.41E-02
127GO:0010197: polar nucleus fusion1.41E-02
128GO:0046323: glucose import1.41E-02
129GO:0048544: recognition of pollen1.49E-02
130GO:0061025: membrane fusion1.49E-02
131GO:0006623: protein targeting to vacuole1.56E-02
132GO:0010183: pollen tube guidance1.56E-02
133GO:0009749: response to glucose1.56E-02
134GO:0071554: cell wall organization or biogenesis1.64E-02
135GO:0010193: response to ozone1.64E-02
136GO:0006470: protein dephosphorylation1.75E-02
137GO:0030163: protein catabolic process1.80E-02
138GO:0006904: vesicle docking involved in exocytosis1.96E-02
139GO:0035556: intracellular signal transduction2.11E-02
140GO:0001666: response to hypoxia2.13E-02
141GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.22E-02
142GO:0042128: nitrate assimilation2.30E-02
143GO:0048573: photoperiodism, flowering2.39E-02
144GO:0050832: defense response to fungus2.43E-02
145GO:0008219: cell death2.57E-02
146GO:0010311: lateral root formation2.67E-02
147GO:0006499: N-terminal protein myristoylation2.76E-02
148GO:0009407: toxin catabolic process2.76E-02
149GO:0048527: lateral root development2.85E-02
150GO:0006865: amino acid transport2.95E-02
151GO:0009867: jasmonic acid mediated signaling pathway3.05E-02
152GO:0045087: innate immune response3.05E-02
153GO:0006897: endocytosis3.44E-02
154GO:0006887: exocytosis3.44E-02
155GO:0009744: response to sucrose3.65E-02
156GO:0009636: response to toxic substance3.96E-02
157GO:0007165: signal transduction4.03E-02
158GO:0031347: regulation of defense response4.18E-02
159GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.18E-02
160GO:0009751: response to salicylic acid4.28E-02
161GO:0048364: root development4.52E-02
162GO:0006979: response to oxidative stress4.77E-02
RankGO TermAdjusted P value
1GO:0005365: myo-inositol transmembrane transporter activity0.00E+00
2GO:0016034: maleylacetoacetate isomerase activity0.00E+00
3GO:0015576: sorbitol transmembrane transporter activity0.00E+00
4GO:0003837: beta-ureidopropionase activity0.00E+00
5GO:0015575: mannitol transmembrane transporter activity0.00E+00
6GO:0015591: D-ribose transmembrane transporter activity0.00E+00
7GO:0015148: D-xylose transmembrane transporter activity0.00E+00
8GO:0005524: ATP binding1.09E-12
9GO:0016301: kinase activity7.23E-09
10GO:0004713: protein tyrosine kinase activity7.62E-08
11GO:0004674: protein serine/threonine kinase activity7.65E-08
12GO:0004714: transmembrane receptor protein tyrosine kinase activity1.83E-06
13GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.65E-06
14GO:0005515: protein binding3.89E-06
15GO:0102391: decanoate--CoA ligase activity7.27E-05
16GO:0004012: phospholipid-translocating ATPase activity7.27E-05
17GO:0004467: long-chain fatty acid-CoA ligase activity9.72E-05
18GO:0004672: protein kinase activity1.37E-04
19GO:0032050: clathrin heavy chain binding1.67E-04
20GO:1901149: salicylic acid binding1.67E-04
21GO:0015085: calcium ion transmembrane transporter activity1.67E-04
22GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity1.67E-04
23GO:0015168: glycerol transmembrane transporter activity1.67E-04
24GO:0045140: inositol phosphoceramide synthase activity3.78E-04
25GO:0004061: arylformamidase activity3.78E-04
26GO:0005388: calcium-transporting ATPase activity4.10E-04
27GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism4.10E-04
28GO:0004190: aspartic-type endopeptidase activity5.19E-04
29GO:0005516: calmodulin binding5.37E-04
30GO:0001664: G-protein coupled receptor binding6.19E-04
31GO:0031683: G-protein beta/gamma-subunit complex binding6.19E-04
32GO:0004663: Rab geranylgeranyltransferase activity6.19E-04
33GO:0003840: gamma-glutamyltransferase activity6.19E-04
34GO:0036374: glutathione hydrolase activity6.19E-04
35GO:0004781: sulfate adenylyltransferase (ATP) activity6.19E-04
36GO:0033612: receptor serine/threonine kinase binding7.70E-04
37GO:0005354: galactose transmembrane transporter activity8.83E-04
38GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity8.83E-04
39GO:0015145: monosaccharide transmembrane transporter activity1.48E-03
40GO:0004356: glutamate-ammonia ligase activity1.48E-03
41GO:0009931: calcium-dependent protein serine/threonine kinase activity2.43E-03
42GO:0004683: calmodulin-dependent protein kinase activity2.56E-03
43GO:0008235: metalloexopeptidase activity2.58E-03
44GO:0005509: calcium ion binding3.21E-03
45GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)3.41E-03
46GO:0004712: protein serine/threonine/tyrosine kinase activity3.91E-03
47GO:0005545: 1-phosphatidylinositol binding4.81E-03
48GO:0004177: aminopeptidase activity5.32E-03
49GO:0005262: calcium channel activity6.38E-03
50GO:0030552: cAMP binding7.50E-03
51GO:0030553: cGMP binding7.50E-03
52GO:0005217: intracellular ligand-gated ion channel activity7.50E-03
53GO:0008061: chitin binding7.50E-03
54GO:0004970: ionotropic glutamate receptor activity7.50E-03
55GO:0004871: signal transducer activity7.73E-03
56GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen8.04E-03
57GO:0003954: NADH dehydrogenase activity8.70E-03
58GO:0004407: histone deacetylase activity8.70E-03
59GO:0005216: ion channel activity9.33E-03
60GO:0008565: protein transporter activity1.33E-02
61GO:0030551: cyclic nucleotide binding1.34E-02
62GO:0005249: voltage-gated potassium channel activity1.34E-02
63GO:0030276: clathrin binding1.41E-02
64GO:0001085: RNA polymerase II transcription factor binding1.41E-02
65GO:0005355: glucose transmembrane transporter activity1.49E-02
66GO:0016413: O-acetyltransferase activity2.04E-02
67GO:0051213: dioxygenase activity2.13E-02
68GO:0046982: protein heterodimerization activity2.33E-02
69GO:0000287: magnesium ion binding2.33E-02
70GO:0004806: triglyceride lipase activity2.39E-02
71GO:0030247: polysaccharide binding2.39E-02
72GO:0016798: hydrolase activity, acting on glycosyl bonds2.39E-02
73GO:0016740: transferase activity2.53E-02
74GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.85E-02
75GO:0030246: carbohydrate binding2.86E-02
76GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.05E-02
77GO:0019825: oxygen binding3.06E-02
78GO:0004364: glutathione transferase activity3.55E-02
79GO:0005484: SNAP receptor activity3.65E-02
80GO:0042803: protein homodimerization activity3.69E-02
81GO:0004722: protein serine/threonine phosphatase activity3.86E-02
82GO:0005198: structural molecule activity3.96E-02
83GO:0015293: symporter activity3.96E-02
84GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.07E-02
85GO:0003924: GTPase activity4.34E-02
86GO:0016298: lipase activity4.62E-02
87GO:0005506: iron ion binding4.63E-02
88GO:0015171: amino acid transmembrane transporter activity4.84E-02
89GO:0031625: ubiquitin protein ligase binding4.84E-02
RankGO TermAdjusted P value
1GO:0005674: transcription factor TFIIF complex0.00E+00
2GO:0005886: plasma membrane2.01E-14
3GO:0016021: integral component of membrane4.61E-08
4GO:0005911: cell-cell junction1.67E-04
5GO:0031304: intrinsic component of mitochondrial inner membrane3.78E-04
6GO:0005795: Golgi stack5.19E-04
7GO:0005789: endoplasmic reticulum membrane6.24E-04
8GO:0070062: extracellular exosome8.83E-04
9GO:0005968: Rab-protein geranylgeranyltransferase complex8.83E-04
10GO:0000164: protein phosphatase type 1 complex1.48E-03
11GO:0005887: integral component of plasma membrane3.12E-03
12GO:0031902: late endosome membrane4.26E-03
13GO:0017119: Golgi transport complex4.81E-03
14GO:0030125: clathrin vesicle coat4.81E-03
15GO:0005783: endoplasmic reticulum6.39E-03
16GO:0005834: heterotrimeric G-protein complex7.82E-03
17GO:0005905: clathrin-coated pit9.97E-03
18GO:0030136: clathrin-coated vesicle1.27E-02
19GO:0016020: membrane1.31E-02
20GO:0019898: extrinsic component of membrane1.56E-02
21GO:0009504: cell plate1.56E-02
22GO:0000145: exocyst1.72E-02
23GO:0005788: endoplasmic reticulum lumen2.22E-02
24GO:0005667: transcription factor complex2.30E-02
25GO:0005777: peroxisome2.34E-02
26GO:0019005: SCF ubiquitin ligase complex2.57E-02
27GO:0080008: Cul4-RING E3 ubiquitin ligase complex2.61E-02
28GO:0005802: trans-Golgi network3.55E-02
29GO:0090406: pollen tube3.65E-02
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Gene type



Gene DE type