co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G12250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:0015822: ornithine transport	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
5	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
6	GO:0006000: fructose metabolic process	1.58E-06
7	GO:0006002: fructose 6-phosphate metabolic process	5.90E-05
8	GO:0043609: regulation of carbon utilization	8.78E-05
9	GO:0000066: mitochondrial ornithine transport	8.78E-05
10	GO:0010028: xanthophyll cycle	8.78E-05
11	GO:0016119: carotene metabolic process	8.78E-05
12	GO:0043953: protein transport by the Tat complex	8.78E-05
13	GO:0065002: intracellular protein transmembrane transport	8.78E-05
14	GO:0010205: photoinhibition	8.90E-05
15	GO:0006094: gluconeogenesis	1.68E-04
16	GO:0016122: xanthophyll metabolic process	2.08E-04
17	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	2.08E-04
18	GO:0006521: regulation of cellular amino acid metabolic process	2.08E-04
19	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.08E-04
20	GO:0016560: protein import into peroxisome matrix, docking	2.08E-04
21	GO:0042325: regulation of phosphorylation	2.08E-04
22	GO:2000082: regulation of L-ascorbic acid biosynthetic process	3.48E-04
23	GO:0009405: pathogenesis	3.48E-04
24	GO:0071230: cellular response to amino acid stimulus	3.48E-04
25	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.01E-04
26	GO:0001678: cellular glucose homeostasis	5.01E-04
27	GO:0006515: misfolded or incompletely synthesized protein catabolic process	5.01E-04
28	GO:0010023: proanthocyanidin biosynthetic process	6.66E-04
29	GO:0045727: positive regulation of translation	6.66E-04
30	GO:0015994: chlorophyll metabolic process	6.66E-04
31	GO:0016123: xanthophyll biosynthetic process	8.44E-04
32	GO:0016120: carotene biosynthetic process	8.44E-04
33	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.03E-03
34	GO:0042549: photosystem II stabilization	1.03E-03
35	GO:0009267: cellular response to starvation	1.03E-03
36	GO:0000741: karyogamy	1.03E-03
37	GO:1902456: regulation of stomatal opening	1.03E-03
38	GO:0071333: cellular response to glucose stimulus	1.23E-03
39	GO:0046835: carbohydrate phosphorylation	1.23E-03
40	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.44E-03
41	GO:0005975: carbohydrate metabolic process	1.62E-03
42	GO:0048564: photosystem I assembly	1.66E-03
43	GO:0009642: response to light intensity	1.66E-03
44	GO:0006402: mRNA catabolic process	1.66E-03
45	GO:0010492: maintenance of shoot apical meristem identity	1.66E-03
46	GO:0009932: cell tip growth	1.89E-03
47	GO:0032544: plastid translation	1.89E-03
48	GO:0009051: pentose-phosphate shunt, oxidative branch	2.14E-03
49	GO:0048507: meristem development	2.14E-03
50	GO:0010206: photosystem II repair	2.14E-03
51	GO:0000373: Group II intron splicing	2.14E-03
52	GO:0006816: calcium ion transport	2.93E-03
53	GO:0009773: photosynthetic electron transport in photosystem I	2.93E-03
54	GO:0043085: positive regulation of catalytic activity	2.93E-03
55	GO:0009750: response to fructose	2.93E-03
56	GO:0016485: protein processing	2.93E-03
57	GO:0006096: glycolytic process	3.07E-03
58	GO:0006629: lipid metabolic process	3.11E-03
59	GO:0005983: starch catabolic process	3.21E-03
60	GO:0009718: anthocyanin-containing compound biosynthetic process	3.50E-03
61	GO:0005986: sucrose biosynthetic process	3.50E-03
62	GO:2000028: regulation of photoperiodism, flowering	3.50E-03
63	GO:0010207: photosystem II assembly	3.80E-03
64	GO:0010053: root epidermal cell differentiation	4.10E-03
65	GO:0042343: indole glucosinolate metabolic process	4.10E-03
66	GO:0009901: anther dehiscence	4.10E-03
67	GO:0080147: root hair cell development	4.74E-03
68	GO:0006418: tRNA aminoacylation for protein translation	5.07E-03
69	GO:0006874: cellular calcium ion homeostasis	5.07E-03
70	GO:0098542: defense response to other organism	5.42E-03
71	GO:0006413: translational initiation	5.92E-03
72	GO:0040007: growth	6.12E-03
73	GO:0010214: seed coat development	6.48E-03
74	GO:0019722: calcium-mediated signaling	6.48E-03
75	GO:0016117: carotenoid biosynthetic process	6.86E-03
76	GO:0010182: sugar mediated signaling pathway	7.62E-03
77	GO:0006662: glycerol ether metabolic process	7.62E-03
78	GO:0010197: polar nucleus fusion	7.62E-03
79	GO:0009630: gravitropism	9.24E-03
80	GO:0016032: viral process	9.24E-03
81	GO:0030163: protein catabolic process	9.67E-03
82	GO:0009567: double fertilization forming a zygote and endosperm	1.01E-02
83	GO:0071805: potassium ion transmembrane transport	1.05E-02
84	GO:0007267: cell-cell signaling	1.05E-02
85	GO:0006970: response to osmotic stress	1.06E-02
86	GO:0009723: response to ethylene	1.14E-02
87	GO:0010027: thylakoid membrane organization	1.14E-02
88	GO:0016311: dephosphorylation	1.33E-02
89	GO:0048481: plant ovule development	1.38E-02
90	GO:0015979: photosynthesis	1.39E-02
91	GO:0045454: cell redox homeostasis	1.46E-02
92	GO:0006499: N-terminal protein myristoylation	1.48E-02
93	GO:0048527: lateral root development	1.53E-02
94	GO:0009853: photorespiration	1.63E-02
95	GO:0045087: innate immune response	1.63E-02
96	GO:0034599: cellular response to oxidative stress	1.68E-02
97	GO:0006839: mitochondrial transport	1.79E-02
98	GO:0006631: fatty acid metabolic process	1.84E-02
99	GO:0009644: response to high light intensity	2.06E-02
100	GO:0006855: drug transmembrane transport	2.18E-02
101	GO:0009651: response to salt stress	2.22E-02
102	GO:0006364: rRNA processing	2.41E-02
103	GO:0009585: red, far-red light phototransduction	2.41E-02
104	GO:0006813: potassium ion transport	2.41E-02
105	GO:0009626: plant-type hypersensitive response	2.84E-02
106	GO:0009735: response to cytokinin	2.93E-02
107	GO:0009742: brassinosteroid mediated signaling pathway	3.23E-02
108	GO:0045893: positive regulation of transcription, DNA-templated	3.68E-02
109	GO:0009058: biosynthetic process	3.78E-02
110	GO:0009451: RNA modification	4.65E-02
111	GO:0009739: response to gibberellin	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
2	GO:0045436: lycopene beta cyclase activity	0.00E+00
3	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
4	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
5	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
6	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
7	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
8	GO:0008066: glutamate receptor activity	8.78E-05
9	GO:0004565: beta-galactosidase activity	1.68E-04
10	GO:0016868: intramolecular transferase activity, phosphotransferases	2.08E-04
11	GO:0005094: Rho GDP-dissociation inhibitor activity	2.08E-04
12	GO:0009977: proton motive force dependent protein transmembrane transporter activity	2.08E-04
13	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.08E-04
14	GO:0000064: L-ornithine transmembrane transporter activity	2.08E-04
15	GO:0010291: carotene beta-ring hydroxylase activity	2.08E-04
16	GO:0005528: FK506 binding	2.70E-04
17	GO:0004176: ATP-dependent peptidase activity	3.29E-04
18	GO:0002161: aminoacyl-tRNA editing activity	3.48E-04
19	GO:0090729: toxin activity	3.48E-04
20	GO:0017057: 6-phosphogluconolactonase activity	5.01E-04
21	GO:0004396: hexokinase activity	6.66E-04
22	GO:0019158: mannokinase activity	6.66E-04
23	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.66E-04
24	GO:0008453: alanine-glyoxylate transaminase activity	6.66E-04
25	GO:0005536: glucose binding	6.66E-04
26	GO:0046556: alpha-L-arabinofuranosidase activity	6.66E-04
27	GO:2001070: starch binding	1.03E-03
28	GO:0004332: fructose-bisphosphate aldolase activity	1.03E-03
29	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.26E-03
30	GO:0008047: enzyme activator activity	2.65E-03
31	GO:0000049: tRNA binding	3.21E-03
32	GO:0005262: calcium channel activity	3.50E-03
33	GO:0019888: protein phosphatase regulator activity	3.50E-03
34	GO:0008081: phosphoric diester hydrolase activity	3.50E-03
35	GO:0008266: poly(U) RNA binding	3.80E-03
36	GO:0004190: aspartic-type endopeptidase activity	4.10E-03
37	GO:0005217: intracellular ligand-gated ion channel activity	4.10E-03
38	GO:0004970: ionotropic glutamate receptor activity	4.10E-03
39	GO:0015079: potassium ion transmembrane transporter activity	5.07E-03
40	GO:0016779: nucleotidyltransferase activity	5.76E-03
41	GO:0003727: single-stranded RNA binding	6.48E-03
42	GO:0047134: protein-disulfide reductase activity	6.86E-03
43	GO:0004812: aminoacyl-tRNA ligase activity	6.86E-03
44	GO:0004791: thioredoxin-disulfide reductase activity	8.02E-03
45	GO:0050662: coenzyme binding	8.02E-03
46	GO:0048038: quinone binding	8.83E-03
47	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.67E-03
48	GO:0008483: transaminase activity	1.05E-02
49	GO:0008237: metallopeptidase activity	1.05E-02
50	GO:0016787: hydrolase activity	1.14E-02
51	GO:0004806: triglyceride lipase activity	1.28E-02
52	GO:0008236: serine-type peptidase activity	1.33E-02
53	GO:0015238: drug transmembrane transporter activity	1.43E-02
54	GO:0005096: GTPase activator activity	1.43E-02
55	GO:0004222: metalloendopeptidase activity	1.48E-02
56	GO:0030145: manganese ion binding	1.53E-02
57	GO:0004871: signal transducer activity	1.53E-02
58	GO:0003746: translation elongation factor activity	1.63E-02
59	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.74E-02
60	GO:0016491: oxidoreductase activity	2.23E-02
61	GO:0016298: lipase activity	2.47E-02
62	GO:0016874: ligase activity	2.97E-02
63	GO:0015035: protein disulfide oxidoreductase activity	3.17E-02
64	GO:0019843: rRNA binding	3.64E-02
65	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.71E-02
66	GO:0004252: serine-type endopeptidase activity	3.92E-02
67	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.35E-02
68	GO:0015297: antiporter activity	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0043233: organelle lumen	0.00E+00
3	GO:0009507: chloroplast	3.29E-06
4	GO:0009534: chloroplast thylakoid	4.25E-05
5	GO:0031361: integral component of thylakoid membrane	8.78E-05
6	GO:0030095: chloroplast photosystem II	1.91E-04
7	GO:0005782: peroxisomal matrix	3.48E-04
8	GO:0033281: TAT protein transport complex	3.48E-04
9	GO:0009543: chloroplast thylakoid lumen	5.68E-04
10	GO:0009570: chloroplast stroma	6.48E-04
11	GO:0030660: Golgi-associated vesicle membrane	6.66E-04
12	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	6.66E-04
13	GO:0009535: chloroplast thylakoid membrane	8.20E-04
14	GO:0030529: intracellular ribonucleoprotein complex	9.37E-04
15	GO:0009533: chloroplast stromal thylakoid	1.44E-03
16	GO:0009579: thylakoid	1.61E-03
17	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.66E-03
18	GO:0048046: apoplast	2.12E-03
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.14E-03
20	GO:0000159: protein phosphatase type 2A complex	2.93E-03
21	GO:0005765: lysosomal membrane	2.93E-03
22	GO:0031307: integral component of mitochondrial outer membrane	3.21E-03
23	GO:0005578: proteinaceous extracellular matrix	3.50E-03
24	GO:0042651: thylakoid membrane	5.07E-03
25	GO:0005777: peroxisome	7.67E-03
26	GO:0009523: photosystem II	8.42E-03
27	GO:0031977: thylakoid lumen	1.84E-02
28	GO:0009505: plant-type cell wall	2.10E-02
29	GO:0010008: endosome membrane	2.78E-02
30	GO:0016021: integral component of membrane	2.96E-02
31	GO:0010287: plastoglobule	3.50E-02
32	GO:0009941: chloroplast envelope	3.64E-02
33	GO:0005623: cell	3.71E-02
34	GO:0005829: cytosol	4.75E-02