Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G12240

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0033494: ferulate metabolic process0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:2000121: regulation of removal of superoxide radicals0.00E+00
5GO:0061635: regulation of protein complex stability0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0005996: monosaccharide metabolic process0.00E+00
8GO:0019284: L-methionine salvage from S-adenosylmethionine0.00E+00
9GO:0006399: tRNA metabolic process0.00E+00
10GO:2000505: regulation of energy homeostasis0.00E+00
11GO:0002184: cytoplasmic translational termination0.00E+00
12GO:0015979: photosynthesis1.22E-11
13GO:0009773: photosynthetic electron transport in photosystem I1.90E-09
14GO:0032544: plastid translation1.57E-08
15GO:0009735: response to cytokinin1.99E-08
16GO:0006412: translation2.83E-08
17GO:0015976: carbon utilization2.37E-06
18GO:0015995: chlorophyll biosynthetic process3.05E-06
19GO:0042254: ribosome biogenesis3.64E-05
20GO:0042742: defense response to bacterium5.53E-05
21GO:0010206: photosystem II repair7.20E-05
22GO:0080170: hydrogen peroxide transmembrane transport9.96E-05
23GO:2001141: regulation of RNA biosynthetic process9.96E-05
24GO:2000122: negative regulation of stomatal complex development1.71E-04
25GO:0045727: positive regulation of translation1.71E-04
26GO:0006546: glycine catabolic process1.71E-04
27GO:0010037: response to carbon dioxide1.71E-04
28GO:0009658: chloroplast organization1.96E-04
29GO:0042549: photosystem II stabilization3.65E-04
30GO:0018298: protein-chromophore linkage4.75E-04
31GO:0010019: chloroplast-nucleus signaling pathway4.87E-04
32GO:0009409: response to cold5.44E-04
33GO:0070509: calcium ion import5.68E-04
34GO:0007263: nitric oxide mediated signal transduction5.68E-04
35GO:0043489: RNA stabilization5.68E-04
36GO:1904966: positive regulation of vitamin E biosynthetic process5.68E-04
37GO:0000481: maturation of 5S rRNA5.68E-04
38GO:1904964: positive regulation of phytol biosynthetic process5.68E-04
39GO:0071461: cellular response to redox state5.68E-04
40GO:0034337: RNA folding5.68E-04
41GO:0071588: hydrogen peroxide mediated signaling pathway5.68E-04
42GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.68E-04
43GO:0010196: nonphotochemical quenching6.23E-04
44GO:0006810: transport6.95E-04
45GO:0034220: ion transmembrane transport9.04E-04
46GO:0000413: protein peptidyl-prolyl isomerization9.04E-04
47GO:0071482: cellular response to light stimulus9.43E-04
48GO:0010114: response to red light1.01E-03
49GO:0080005: photosystem stoichiometry adjustment1.22E-03
50GO:1902326: positive regulation of chlorophyll biosynthetic process1.22E-03
51GO:0010541: acropetal auxin transport1.22E-03
52GO:0034755: iron ion transmembrane transport1.22E-03
53GO:0030388: fructose 1,6-bisphosphate metabolic process1.22E-03
54GO:0010275: NAD(P)H dehydrogenase complex assembly1.22E-03
55GO:0009638: phototropism1.33E-03
56GO:0006352: DNA-templated transcription, initiation1.80E-03
57GO:0018119: peptidyl-cysteine S-nitrosylation1.80E-03
58GO:0006000: fructose metabolic process2.01E-03
59GO:0006518: peptide metabolic process2.01E-03
60GO:0006013: mannose metabolic process2.01E-03
61GO:0010160: formation of animal organ boundary2.01E-03
62GO:0045493: xylan catabolic process2.01E-03
63GO:2001295: malonyl-CoA biosynthetic process2.01E-03
64GO:0006094: gluconeogenesis2.34E-03
65GO:0010411: xyloglucan metabolic process2.56E-03
66GO:0010207: photosystem II assembly2.64E-03
67GO:0019253: reductive pentose-phosphate cycle2.64E-03
68GO:0009226: nucleotide-sugar biosynthetic process2.92E-03
69GO:0043481: anthocyanin accumulation in tissues in response to UV light2.92E-03
70GO:0009817: defense response to fungus, incompatible interaction2.92E-03
71GO:0010731: protein glutathionylation2.92E-03
72GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.92E-03
73GO:1901332: negative regulation of lateral root development2.92E-03
74GO:0046836: glycolipid transport2.92E-03
75GO:1902476: chloride transmembrane transport2.92E-03
76GO:0051513: regulation of monopolar cell growth2.92E-03
77GO:0009152: purine ribonucleotide biosynthetic process2.92E-03
78GO:0046653: tetrahydrofolate metabolic process2.92E-03
79GO:0006636: unsaturated fatty acid biosynthetic process3.31E-03
80GO:0010218: response to far red light3.31E-03
81GO:0006833: water transport3.31E-03
82GO:0030104: water homeostasis3.93E-03
83GO:0015994: chlorophyll metabolic process3.93E-03
84GO:0019464: glycine decarboxylation via glycine cleavage system3.93E-03
85GO:0009637: response to blue light3.96E-03
86GO:0009768: photosynthesis, light harvesting in photosystem I4.06E-03
87GO:0061077: chaperone-mediated protein folding4.47E-03
88GO:0034052: positive regulation of plant-type hypersensitive response5.05E-03
89GO:0009107: lipoate biosynthetic process5.05E-03
90GO:0006655: phosphatidylglycerol biosynthetic process6.26E-03
91GO:0060918: auxin transport6.26E-03
92GO:1902456: regulation of stomatal opening6.26E-03
93GO:0032973: amino acid export6.26E-03
94GO:0000741: karyogamy6.26E-03
95GO:0007623: circadian rhythm6.33E-03
96GO:0045490: pectin catabolic process6.33E-03
97GO:0042631: cellular response to water deprivation6.82E-03
98GO:0009958: positive gravitropism7.36E-03
99GO:0009612: response to mechanical stimulus7.56E-03
100GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.56E-03
101GO:0010555: response to mannitol7.56E-03
102GO:0019509: L-methionine salvage from methylthioadenosine7.56E-03
103GO:1900056: negative regulation of leaf senescence8.96E-03
104GO:0006821: chloride transport8.96E-03
105GO:0009645: response to low light intensity stimulus8.96E-03
106GO:0050829: defense response to Gram-negative bacterium8.96E-03
107GO:0009772: photosynthetic electron transport in photosystem II8.96E-03
108GO:0043090: amino acid import8.96E-03
109GO:0000302: response to reactive oxygen species9.10E-03
110GO:0010439: regulation of glucosinolate biosynthetic process1.04E-02
111GO:0009642: response to light intensity1.04E-02
112GO:0043068: positive regulation of programmed cell death1.04E-02
113GO:0042255: ribosome assembly1.04E-02
114GO:0032508: DNA duplex unwinding1.04E-02
115GO:0010492: maintenance of shoot apical meristem identity1.04E-02
116GO:0048564: photosystem I assembly1.04E-02
117GO:0009657: plastid organization1.20E-02
118GO:0006002: fructose 6-phosphate metabolic process1.20E-02
119GO:0005975: carbohydrate metabolic process1.30E-02
120GO:0010027: thylakoid membrane organization1.32E-02
121GO:0009051: pentose-phosphate shunt, oxidative branch1.36E-02
122GO:0009821: alkaloid biosynthetic process1.36E-02
123GO:0090305: nucleic acid phosphodiester bond hydrolysis1.36E-02
124GO:0006098: pentose-phosphate shunt1.36E-02
125GO:0080144: amino acid homeostasis1.36E-02
126GO:0048507: meristem development1.36E-02
127GO:0055085: transmembrane transport1.38E-02
128GO:0042128: nitrate assimilation1.48E-02
129GO:0010205: photoinhibition1.54E-02
130GO:0080167: response to karrikin1.70E-02
131GO:0009299: mRNA transcription1.71E-02
132GO:0006949: syncytium formation1.71E-02
133GO:0019684: photosynthesis, light reaction1.90E-02
134GO:0009698: phenylpropanoid metabolic process1.90E-02
135GO:0009089: lysine biosynthetic process via diaminopimelate1.90E-02
136GO:0043085: positive regulation of catalytic activity1.90E-02
137GO:0006879: cellular iron ion homeostasis1.90E-02
138GO:0000272: polysaccharide catabolic process1.90E-02
139GO:0009750: response to fructose1.90E-02
140GO:0009684: indoleacetic acid biosynthetic process1.90E-02
141GO:0010015: root morphogenesis1.90E-02
142GO:0010119: regulation of stomatal movement2.01E-02
143GO:0009631: cold acclimation2.01E-02
144GO:0015706: nitrate transport2.09E-02
145GO:0016024: CDP-diacylglycerol biosynthetic process2.09E-02
146GO:0008361: regulation of cell size2.09E-02
147GO:0045454: cell redox homeostasis2.23E-02
148GO:0006633: fatty acid biosynthetic process2.24E-02
149GO:0010628: positive regulation of gene expression2.29E-02
150GO:0006006: glucose metabolic process2.29E-02
151GO:0009725: response to hormone2.29E-02
152GO:0009767: photosynthetic electron transport chain2.29E-02
153GO:0005986: sucrose biosynthetic process2.29E-02
154GO:0034599: cellular response to oxidative stress2.30E-02
155GO:0010143: cutin biosynthetic process2.50E-02
156GO:0010540: basipetal auxin transport2.50E-02
157GO:0030001: metal ion transport2.51E-02
158GO:0010167: response to nitrate2.71E-02
159GO:0005985: sucrose metabolic process2.71E-02
160GO:0010030: positive regulation of seed germination2.71E-02
161GO:0042546: cell wall biogenesis2.95E-02
162GO:0000027: ribosomal large subunit assembly3.15E-02
163GO:0005992: trehalose biosynthetic process3.15E-02
164GO:0019344: cysteine biosynthetic process3.15E-02
165GO:0006418: tRNA aminoacylation for protein translation3.38E-02
166GO:0007017: microtubule-based process3.38E-02
167GO:0008152: metabolic process3.50E-02
168GO:0009664: plant-type cell wall organization3.56E-02
169GO:0048511: rhythmic process3.62E-02
170GO:0006364: rRNA processing3.82E-02
171GO:0009585: red, far-red light phototransduction3.82E-02
172GO:0009814: defense response, incompatible interaction3.86E-02
173GO:0010017: red or far-red light signaling pathway3.86E-02
174GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.11E-02
175GO:0006012: galactose metabolic process4.11E-02
176GO:0009826: unidimensional cell growth4.14E-02
177GO:0048443: stamen development4.36E-02
178GO:0009306: protein secretion4.36E-02
179GO:0006096: glycolytic process4.51E-02
180GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.61E-02
181GO:0009626: plant-type hypersensitive response4.80E-02
182GO:0042391: regulation of membrane potential4.88E-02
183GO:0010087: phloem or xylem histogenesis4.88E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
3GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
4GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
5GO:0043864: indoleacetamide hydrolase activity0.00E+00
6GO:0046570: methylthioribulose 1-phosphate dehydratase activity0.00E+00
7GO:0043874: acireductone synthase activity0.00E+00
8GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
9GO:0004822: isoleucine-tRNA ligase activity0.00E+00
10GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity0.00E+00
11GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
12GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
13GO:0019843: rRNA binding1.37E-19
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.02E-10
15GO:0003735: structural constituent of ribosome8.71E-10
16GO:0005528: FK506 binding2.61E-08
17GO:0016851: magnesium chelatase activity8.34E-07
18GO:0008266: poly(U) RNA binding1.44E-05
19GO:0051920: peroxiredoxin activity1.66E-05
20GO:0016209: antioxidant activity3.82E-05
21GO:0016987: sigma factor activity1.71E-04
22GO:0001053: plastid sigma factor activity1.71E-04
23GO:0004089: carbonate dehydratase activity2.21E-04
24GO:0016168: chlorophyll binding3.39E-04
25GO:0004130: cytochrome-c peroxidase activity3.65E-04
26GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity5.68E-04
27GO:0009671: nitrate:proton symporter activity5.68E-04
28GO:0045485: omega-6 fatty acid desaturase activity5.68E-04
29GO:0005221: intracellular cyclic nucleotide activated cation channel activity5.68E-04
30GO:0046906: tetrapyrrole binding5.68E-04
31GO:0019899: enzyme binding6.23E-04
32GO:0051537: 2 iron, 2 sulfur cluster binding1.14E-03
33GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.22E-03
34GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.22E-03
35GO:0008967: phosphoglycolate phosphatase activity1.22E-03
36GO:0017118: lipoyltransferase activity1.22E-03
37GO:0047746: chlorophyllase activity1.22E-03
38GO:0042389: omega-3 fatty acid desaturase activity1.22E-03
39GO:0016868: intramolecular transferase activity, phosphotransferases1.22E-03
40GO:0004618: phosphoglycerate kinase activity1.22E-03
41GO:0010297: heteropolysaccharide binding1.22E-03
42GO:0043425: bHLH transcription factor binding1.22E-03
43GO:0016415: octanoyltransferase activity1.22E-03
44GO:0004047: aminomethyltransferase activity1.22E-03
45GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.22E-03
46GO:0050734: hydroxycinnamoyltransferase activity2.01E-03
47GO:0002161: aminoacyl-tRNA editing activity2.01E-03
48GO:0004075: biotin carboxylase activity2.01E-03
49GO:0045174: glutathione dehydrogenase (ascorbate) activity2.01E-03
50GO:0016742: hydroxymethyl-, formyl- and related transferase activity2.01E-03
51GO:0008864: formyltetrahydrofolate deformylase activity2.01E-03
52GO:0004324: ferredoxin-NADP+ reductase activity2.01E-03
53GO:0010277: chlorophyllide a oxygenase [overall] activity2.01E-03
54GO:0015250: water channel activity2.08E-03
55GO:0043023: ribosomal large subunit binding2.92E-03
56GO:0017089: glycolipid transporter activity2.92E-03
57GO:0004375: glycine dehydrogenase (decarboxylating) activity2.92E-03
58GO:0031409: pigment binding3.31E-03
59GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.93E-03
60GO:0009044: xylan 1,4-beta-xylosidase activity3.93E-03
61GO:0005253: anion channel activity3.93E-03
62GO:0043495: protein anchor3.93E-03
63GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.93E-03
64GO:0046556: alpha-L-arabinofuranosidase activity3.93E-03
65GO:0004345: glucose-6-phosphate dehydrogenase activity3.93E-03
66GO:0051861: glycolipid binding3.93E-03
67GO:0004045: aminoacyl-tRNA hydrolase activity3.93E-03
68GO:0003959: NADPH dehydrogenase activity5.05E-03
69GO:0004040: amidase activity5.05E-03
70GO:0003989: acetyl-CoA carboxylase activity5.05E-03
71GO:0030570: pectate lyase activity5.34E-03
72GO:0022891: substrate-specific transmembrane transporter activity5.34E-03
73GO:0003727: single-stranded RNA binding5.81E-03
74GO:0016688: L-ascorbate peroxidase activity6.26E-03
75GO:0008200: ion channel inhibitor activity6.26E-03
76GO:0005247: voltage-gated chloride channel activity6.26E-03
77GO:0004332: fructose-bisphosphate aldolase activity6.26E-03
78GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity7.56E-03
79GO:0004017: adenylate kinase activity7.56E-03
80GO:0004602: glutathione peroxidase activity7.56E-03
81GO:0005261: cation channel activity7.56E-03
82GO:0004559: alpha-mannosidase activity7.56E-03
83GO:0005242: inward rectifier potassium channel activity7.56E-03
84GO:0050662: coenzyme binding7.92E-03
85GO:0016762: xyloglucan:xyloglucosyl transferase activity9.10E-03
86GO:0004034: aldose 1-epimerase activity1.04E-02
87GO:0004869: cysteine-type endopeptidase inhibitor activity1.04E-02
88GO:0004650: polygalacturonase activity1.12E-02
89GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.20E-02
90GO:0004601: peroxidase activity1.23E-02
91GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.36E-02
92GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.49E-02
93GO:0005381: iron ion transmembrane transporter activity1.54E-02
94GO:0016844: strictosidine synthase activity1.54E-02
95GO:0015112: nitrate transmembrane transporter activity1.54E-02
96GO:0016798: hydrolase activity, acting on glycosyl bonds1.56E-02
97GO:0008236: serine-type peptidase activity1.65E-02
98GO:0004805: trehalose-phosphatase activity1.71E-02
99GO:0016829: lyase activity1.86E-02
100GO:0004222: metalloendopeptidase activity1.91E-02
101GO:0000049: tRNA binding2.09E-02
102GO:0008378: galactosyltransferase activity2.09E-02
103GO:0004565: beta-galactosidase activity2.29E-02
104GO:0004022: alcohol dehydrogenase (NAD) activity2.29E-02
105GO:0010329: auxin efflux transmembrane transporter activity2.29E-02
106GO:0031072: heat shock protein binding2.29E-02
107GO:0005262: calcium channel activity2.29E-02
108GO:0003993: acid phosphatase activity2.30E-02
109GO:0016491: oxidoreductase activity2.32E-02
110GO:0008146: sulfotransferase activity2.71E-02
111GO:0030552: cAMP binding2.71E-02
112GO:0030553: cGMP binding2.71E-02
113GO:0004364: glutathione transferase activity2.73E-02
114GO:0004185: serine-type carboxypeptidase activity2.84E-02
115GO:0005216: ion channel activity3.38E-02
116GO:0015079: potassium ion transmembrane transporter activity3.38E-02
117GO:0004707: MAP kinase activity3.62E-02
118GO:0004176: ATP-dependent peptidase activity3.62E-02
119GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.82E-02
120GO:0003690: double-stranded DNA binding3.96E-02
121GO:0030246: carbohydrate binding4.15E-02
122GO:0045330: aspartyl esterase activity4.23E-02
123GO:0003756: protein disulfide isomerase activity4.36E-02
124GO:0016788: hydrolase activity, acting on ester bonds4.44E-02
125GO:0004812: aminoacyl-tRNA ligase activity4.61E-02
126GO:0005515: protein binding4.71E-02
127GO:0030551: cyclic nucleotide binding4.88E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
4GO:0009507: chloroplast2.12E-66
5GO:0009570: chloroplast stroma1.15E-47
6GO:0009535: chloroplast thylakoid membrane4.90E-46
7GO:0009941: chloroplast envelope5.95E-39
8GO:0009534: chloroplast thylakoid3.61E-33
9GO:0009579: thylakoid4.73E-24
10GO:0009543: chloroplast thylakoid lumen1.14E-22
11GO:0031977: thylakoid lumen3.04E-12
12GO:0048046: apoplast5.35E-09
13GO:0005840: ribosome1.17E-08
14GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.86E-08
15GO:0010007: magnesium chelatase complex1.75E-07
16GO:0030095: chloroplast photosystem II4.09E-07
17GO:0010319: stromule1.27E-06
18GO:0009654: photosystem II oxygen evolving complex1.41E-06
19GO:0016020: membrane2.45E-06
20GO:0019898: extrinsic component of membrane1.03E-05
21GO:0005618: cell wall6.44E-05
22GO:0009706: chloroplast inner membrane9.85E-05
23GO:0009505: plant-type cell wall1.36E-04
24GO:0009523: photosystem II1.46E-04
25GO:0000312: plastid small ribosomal subunit2.62E-04
26GO:0031969: chloroplast membrane3.33E-04
27GO:0042651: thylakoid membrane4.66E-04
28GO:0043674: columella5.68E-04
29GO:0009783: photosystem II antenna complex5.68E-04
30GO:0009344: nitrite reductase complex [NAD(P)H]5.68E-04
31GO:0009547: plastid ribosome5.68E-04
32GO:0009533: chloroplast stromal thylakoid6.23E-04
33GO:0010287: plastoglobule7.80E-04
34GO:0009522: photosystem I1.09E-03
35GO:0042170: plastid membrane1.22E-03
36GO:0000427: plastid-encoded plastid RNA polymerase complex1.22E-03
37GO:0000311: plastid large ribosomal subunit2.06E-03
38GO:0005960: glycine cleavage complex2.92E-03
39GO:0009531: secondary cell wall2.92E-03
40GO:0034707: chloride channel complex6.26E-03
41GO:0042807: central vacuole8.96E-03
42GO:0030529: intracellular ribonucleoprotein complex1.32E-02
43GO:0005773: vacuole1.35E-02
44GO:0008180: COP9 signalosome1.36E-02
45GO:0042644: chloroplast nucleoid1.36E-02
46GO:0045298: tubulin complex1.36E-02
47GO:0005763: mitochondrial small ribosomal subunit1.36E-02
48GO:0015934: large ribosomal subunit2.01E-02
49GO:0032040: small-subunit processome2.09E-02
50GO:0009508: plastid chromosome2.29E-02
51GO:0022626: cytosolic ribosome2.35E-02
52GO:0030076: light-harvesting complex2.71E-02
53GO:0015935: small ribosomal subunit3.62E-02
54GO:0005887: integral component of plasma membrane4.72E-02
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Gene type



Gene DE type