co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G12090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015717: triose phosphate transport	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
5	GO:0019323: pentose catabolic process	0.00E+00
6	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
7	GO:0015979: photosynthesis	2.62E-22
8	GO:0009773: photosynthetic electron transport in photosystem I	1.82E-11
9	GO:0009765: photosynthesis, light harvesting	1.79E-07
10	GO:0010207: photosystem II assembly	6.41E-07
11	GO:0090391: granum assembly	8.00E-06
12	GO:0019464: glycine decarboxylation via glycine cleavage system	3.35E-05
13	GO:0018298: protein-chromophore linkage	3.88E-05
14	GO:0009768: photosynthesis, light harvesting in photosystem I	6.27E-05
15	GO:0009735: response to cytokinin	7.68E-05
16	GO:0010196: nonphotochemical quenching	1.45E-04
17	GO:0009769: photosynthesis, light harvesting in photosystem II	1.45E-04
18	GO:0009645: response to low light intensity stimulus	1.45E-04
19	GO:0009772: photosynthetic electron transport in photosystem II	1.45E-04
20	GO:0015986: ATP synthesis coupled proton transport	1.69E-04
21	GO:0044262: cellular carbohydrate metabolic process	2.16E-04
22	GO:1904966: positive regulation of vitamin E biosynthetic process	2.16E-04
23	GO:1904964: positive regulation of phytol biosynthetic process	2.16E-04
24	GO:0006106: fumarate metabolic process	2.16E-04
25	GO:1902458: positive regulation of stomatal opening	2.16E-04
26	GO:0071588: hydrogen peroxide mediated signaling pathway	2.16E-04
27	GO:0010206: photosystem II repair	2.78E-04
28	GO:0010027: thylakoid membrane organization	3.40E-04
29	GO:0015995: chlorophyll biosynthetic process	4.21E-04
30	GO:0042550: photosystem I stabilization	4.81E-04
31	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.81E-04
32	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.81E-04
33	GO:0010119: regulation of stomatal movement	5.77E-04
34	GO:0035436: triose phosphate transmembrane transport	7.83E-04
35	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.12E-03
36	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.12E-03
37	GO:0009650: UV protection	1.12E-03
38	GO:0050482: arachidonic acid secretion	1.12E-03
39	GO:0051513: regulation of monopolar cell growth	1.12E-03
40	GO:0071484: cellular response to light intensity	1.12E-03
41	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.29E-03
42	GO:0015713: phosphoglycerate transport	1.48E-03
43	GO:2000122: negative regulation of stomatal complex development	1.48E-03
44	GO:0006546: glycine catabolic process	1.48E-03
45	GO:0010037: response to carbon dioxide	1.48E-03
46	GO:0010109: regulation of photosynthesis	1.48E-03
47	GO:0015976: carbon utilization	1.48E-03
48	GO:0000413: protein peptidyl-prolyl isomerization	1.63E-03
49	GO:0016120: carotene biosynthetic process	1.89E-03
50	GO:0045038: protein import into chloroplast thylakoid membrane	1.89E-03
51	GO:0031365: N-terminal protein amino acid modification	1.89E-03
52	GO:0016123: xanthophyll biosynthetic process	1.89E-03
53	GO:0034052: positive regulation of plant-type hypersensitive response	1.89E-03
54	GO:0042742: defense response to bacterium	2.00E-03
55	GO:0009643: photosynthetic acclimation	2.33E-03
56	GO:0009635: response to herbicide	2.33E-03
57	GO:0045454: cell redox homeostasis	2.49E-03
58	GO:0009828: plant-type cell wall loosening	2.62E-03
59	GO:0009612: response to mechanical stimulus	2.80E-03
60	GO:0010189: vitamin E biosynthetic process	2.80E-03
61	GO:0010019: chloroplast-nucleus signaling pathway	2.80E-03
62	GO:0010555: response to mannitol	2.80E-03
63	GO:0071470: cellular response to osmotic stress	2.80E-03
64	GO:0006869: lipid transport	2.86E-03
65	GO:0009737: response to abscisic acid	2.89E-03
66	GO:0042128: nitrate assimilation	3.48E-03
67	GO:0010411: xyloglucan metabolic process	3.67E-03
68	GO:0009819: drought recovery	3.82E-03
69	GO:0009642: response to light intensity	3.82E-03
70	GO:0043068: positive regulation of programmed cell death	3.82E-03
71	GO:2000070: regulation of response to water deprivation	3.82E-03
72	GO:0050821: protein stabilization	3.82E-03
73	GO:0006644: phospholipid metabolic process	3.82E-03
74	GO:0015996: chlorophyll catabolic process	4.38E-03
75	GO:0007186: G-protein coupled receptor signaling pathway	4.38E-03
76	GO:0010218: response to far red light	4.48E-03
77	GO:0009631: cold acclimation	4.69E-03
78	GO:0006754: ATP biosynthetic process	4.95E-03
79	GO:0009637: response to blue light	5.14E-03
80	GO:0034599: cellular response to oxidative stress	5.38E-03
81	GO:0009870: defense response signaling pathway, resistance gene-dependent	6.18E-03
82	GO:0006949: syncytium formation	6.18E-03
83	GO:0010114: response to red light	6.63E-03
84	GO:0009826: unidimensional cell growth	6.68E-03
85	GO:0018119: peptidyl-cysteine S-nitrosylation	6.84E-03
86	GO:0010015: root morphogenesis	6.84E-03
87	GO:0042546: cell wall biogenesis	6.90E-03
88	GO:0009644: response to high light intensity	7.17E-03
89	GO:0055114: oxidation-reduction process	7.43E-03
90	GO:0002213: defense response to insect	7.51E-03
91	GO:0016024: CDP-diacylglycerol biosynthetic process	7.51E-03
92	GO:0045037: protein import into chloroplast stroma	7.51E-03
93	GO:0006108: malate metabolic process	8.22E-03
94	GO:0006006: glucose metabolic process	8.22E-03
95	GO:0009664: plant-type cell wall organization	8.33E-03
96	GO:0019253: reductive pentose-phosphate cycle	8.94E-03
97	GO:0010143: cutin biosynthetic process	8.94E-03
98	GO:0006833: water transport	1.05E-02
99	GO:0019762: glucosinolate catabolic process	1.05E-02
100	GO:0000027: ribosomal large subunit assembly	1.12E-02
101	GO:0051017: actin filament bundle assembly	1.12E-02
102	GO:0019344: cysteine biosynthetic process	1.12E-02
103	GO:0009409: response to cold	1.19E-02
104	GO:0007017: microtubule-based process	1.21E-02
105	GO:0009624: response to nematode	1.28E-02
106	GO:0048511: rhythmic process	1.29E-02
107	GO:0009269: response to desiccation	1.29E-02
108	GO:0009814: defense response, incompatible interaction	1.37E-02
109	GO:0006810: transport	1.37E-02
110	GO:0031348: negative regulation of defense response	1.37E-02
111	GO:0016042: lipid catabolic process	1.46E-02
112	GO:0009411: response to UV	1.46E-02
113	GO:0006012: galactose metabolic process	1.46E-02
114	GO:0016117: carotenoid biosynthetic process	1.64E-02
115	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.64E-02
116	GO:0042335: cuticle development	1.74E-02
117	GO:0034220: ion transmembrane transport	1.74E-02
118	GO:0042744: hydrogen peroxide catabolic process	1.82E-02
119	GO:0010182: sugar mediated signaling pathway	1.83E-02
120	GO:0042752: regulation of circadian rhythm	1.93E-02
121	GO:0000302: response to reactive oxygen species	2.12E-02
122	GO:0045490: pectin catabolic process	2.21E-02
123	GO:0071555: cell wall organization	2.36E-02
124	GO:0006979: response to oxidative stress	2.39E-02
125	GO:0009627: systemic acquired resistance	2.99E-02
126	GO:0009817: defense response to fungus, incompatible interaction	3.34E-02
127	GO:0009407: toxin catabolic process	3.58E-02
128	GO:0009834: plant-type secondary cell wall biogenesis	3.58E-02
129	GO:0007568: aging	3.70E-02
130	GO:0045087: innate immune response	3.95E-02
131	GO:0009853: photorespiration	3.95E-02
132	GO:0006099: tricarboxylic acid cycle	4.07E-02
133	GO:0080167: response to karrikin	4.23E-02
134	GO:0030001: metal ion transport	4.33E-02
135	GO:0005975: carbohydrate metabolic process	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0016168: chlorophyll binding	2.50E-08
4	GO:0051920: peroxiredoxin activity	1.39E-06
5	GO:0016209: antioxidant activity	3.46E-06
6	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.83E-05
7	GO:0031409: pigment binding	4.55E-05
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.30E-04
9	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.16E-04
10	GO:0004333: fumarate hydratase activity	2.16E-04
11	GO:0005509: calcium ion binding	4.60E-04
12	GO:0030385: ferredoxin:thioredoxin reductase activity	4.81E-04
13	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.81E-04
14	GO:0008967: phosphoglycolate phosphatase activity	4.81E-04
15	GO:0016630: protochlorophyllide reductase activity	4.81E-04
16	GO:0004750: ribulose-phosphate 3-epimerase activity	4.81E-04
17	GO:0071917: triose-phosphate transmembrane transporter activity	7.83E-04
18	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.83E-04
19	GO:0004324: ferredoxin-NADP+ reductase activity	7.83E-04
20	GO:0010277: chlorophyllide a oxygenase [overall] activity	7.83E-04
21	GO:0005528: FK506 binding	9.02E-04
22	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.12E-03
23	GO:0030570: pectate lyase activity	1.29E-03
24	GO:0008289: lipid binding	1.33E-03
25	GO:0004601: peroxidase activity	1.36E-03
26	GO:0043495: protein anchor	1.48E-03
27	GO:0015120: phosphoglycerate transmembrane transporter activity	1.48E-03
28	GO:0004659: prenyltransferase activity	1.48E-03
29	GO:1990137: plant seed peroxidase activity	1.48E-03
30	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.76E-03
31	GO:0003959: NADPH dehydrogenase activity	1.89E-03
32	GO:0004623: phospholipase A2 activity	1.89E-03
33	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.17E-03
34	GO:0004130: cytochrome-c peroxidase activity	2.33E-03
35	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.33E-03
36	GO:0019137: thioglucosidase activity	2.33E-03
37	GO:0016688: L-ascorbate peroxidase activity	2.33E-03
38	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.33E-03
39	GO:0004017: adenylate kinase activity	2.80E-03
40	GO:0004602: glutathione peroxidase activity	2.80E-03
41	GO:0046872: metal ion binding	3.22E-03
42	GO:0019899: enzyme binding	3.30E-03
43	GO:0008235: metalloexopeptidase activity	3.30E-03
44	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.67E-03
45	GO:0004034: aldose 1-epimerase activity	3.82E-03
46	GO:0015078: hydrogen ion transmembrane transporter activity	4.38E-03
47	GO:0030234: enzyme regulator activity	6.18E-03
48	GO:0004177: aminopeptidase activity	6.84E-03
49	GO:0051537: 2 iron, 2 sulfur cluster binding	7.17E-03
50	GO:0005198: structural molecule activity	7.45E-03
51	GO:0004089: carbonate dehydratase activity	8.22E-03
52	GO:0031072: heat shock protein binding	8.22E-03
53	GO:0008266: poly(U) RNA binding	8.94E-03
54	GO:0016491: oxidoreductase activity	1.13E-02
55	GO:0043424: protein histidine kinase binding	1.21E-02
56	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.24E-02
57	GO:0004176: ATP-dependent peptidase activity	1.29E-02
58	GO:0022891: substrate-specific transmembrane transporter activity	1.46E-02
59	GO:0003756: protein disulfide isomerase activity	1.55E-02
60	GO:0019843: rRNA binding	1.60E-02
61	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.64E-02
62	GO:0016829: lyase activity	1.73E-02
63	GO:0016853: isomerase activity	1.93E-02
64	GO:0051015: actin filament binding	2.33E-02
65	GO:0016791: phosphatase activity	2.44E-02
66	GO:0005200: structural constituent of cytoskeleton	2.54E-02
67	GO:0015250: water channel activity	2.76E-02
68	GO:0016788: hydrolase activity, acting on ester bonds	3.49E-02
69	GO:0003993: acid phosphatase activity	4.07E-02
70	GO:0008422: beta-glucosidase activity	4.20E-02
71	GO:0050661: NADP binding	4.33E-02
72	GO:0004364: glutathione transferase activity	4.59E-02
73	GO:0052689: carboxylic ester hydrolase activity	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0030093: chloroplast photosystem I	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009535: chloroplast thylakoid membrane	5.99E-48
4	GO:0009534: chloroplast thylakoid	3.35E-36
5	GO:0009507: chloroplast	3.50E-35
6	GO:0009579: thylakoid	1.21E-34
7	GO:0009543: chloroplast thylakoid lumen	7.08E-20
8	GO:0009941: chloroplast envelope	1.47E-19
9	GO:0031977: thylakoid lumen	3.14E-12
10	GO:0009570: chloroplast stroma	7.52E-12
11	GO:0009522: photosystem I	3.75E-09
12	GO:0010287: plastoglobule	6.42E-09
13	GO:0009654: photosystem II oxygen evolving complex	2.92E-08
14	GO:0048046: apoplast	1.24E-07
15	GO:0019898: extrinsic component of membrane	2.43E-07
16	GO:0010319: stromule	5.96E-07
17	GO:0030095: chloroplast photosystem II	6.41E-07
18	GO:0009523: photosystem II	9.07E-06
19	GO:0005960: glycine cleavage complex	1.83E-05
20	GO:0030076: light-harvesting complex	3.81E-05
21	GO:0042651: thylakoid membrane	6.27E-05
22	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	7.90E-05
23	GO:0016020: membrane	1.67E-04
24	GO:0009538: photosystem I reaction center	1.85E-04
25	GO:0045239: tricarboxylic acid cycle enzyme complex	2.16E-04
26	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.78E-04
27	GO:0009528: plastid inner membrane	7.83E-04
28	GO:0016021: integral component of membrane	1.30E-03
29	GO:0009517: PSII associated light-harvesting complex II	1.48E-03
30	GO:0009544: chloroplast ATP synthase complex	1.48E-03
31	GO:0009527: plastid outer membrane	1.48E-03
32	GO:0031969: chloroplast membrane	1.89E-03
33	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	2.33E-03
34	GO:0009505: plant-type cell wall	3.12E-03
35	GO:0009533: chloroplast stromal thylakoid	3.30E-03
36	GO:0005576: extracellular region	3.36E-03
37	GO:0009707: chloroplast outer membrane	4.06E-03
38	GO:0005811: lipid particle	4.38E-03
39	GO:0045298: tubulin complex	4.95E-03
40	GO:0000311: plastid large ribosomal subunit	7.51E-03
41	GO:0009508: plastid chromosome	8.22E-03
42	GO:0005618: cell wall	1.10E-02
43	GO:0009706: chloroplast inner membrane	1.28E-02
44	GO:0009532: plastid stroma	1.29E-02
45	GO:0031410: cytoplasmic vesicle	1.37E-02
46	GO:0015629: actin cytoskeleton	1.46E-02
47	GO:0009295: nucleoid	2.54E-02
48	GO:0046658: anchored component of plasma membrane	2.93E-02