co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G11870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042821: pyridoxal biosynthetic process	0.00E+00
2	GO:0006223: uracil salvage	0.00E+00
3	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
4	GO:0016553: base conversion or substitution editing	0.00E+00
5	GO:0042820: vitamin B6 catabolic process	0.00E+00
6	GO:0006399: tRNA metabolic process	0.00E+00
7	GO:0070125: mitochondrial translational elongation	0.00E+00
8	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
9	GO:0002184: cytoplasmic translational termination	0.00E+00
10	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
11	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
12	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
13	GO:0006412: translation	5.27E-17
14	GO:0015995: chlorophyll biosynthetic process	2.12E-15
15	GO:0032544: plastid translation	5.31E-14
16	GO:0009658: chloroplast organization	4.28E-11
17	GO:0042254: ribosome biogenesis	8.64E-10
18	GO:0009735: response to cytokinin	1.91E-09
19	GO:0006353: DNA-templated transcription, termination	1.34E-07
20	GO:0010027: thylakoid membrane organization	1.79E-07
21	GO:0006782: protoporphyrinogen IX biosynthetic process	8.11E-07
22	GO:0015979: photosynthesis	8.38E-07
23	GO:1901259: chloroplast rRNA processing	4.63E-06
24	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.37E-06
25	GO:0042255: ribosome assembly	1.12E-05
26	GO:0009793: embryo development ending in seed dormancy	1.75E-05
27	GO:0009790: embryo development	3.85E-05
28	GO:0032502: developmental process	4.72E-05
29	GO:0016120: carotene biosynthetic process	1.16E-04
30	GO:0032543: mitochondrial translation	1.16E-04
31	GO:0045038: protein import into chloroplast thylakoid membrane	1.16E-04
32	GO:0016123: xanthophyll biosynthetic process	1.16E-04
33	GO:0042372: phylloquinone biosynthetic process	2.28E-04
34	GO:0009443: pyridoxal 5'-phosphate salvage	3.44E-04
35	GO:0043489: RNA stabilization	3.44E-04
36	GO:1904966: positive regulation of vitamin E biosynthetic process	3.44E-04
37	GO:1904964: positive regulation of phytol biosynthetic process	3.44E-04
38	GO:0042371: vitamin K biosynthetic process	3.44E-04
39	GO:1902458: positive regulation of stomatal opening	3.44E-04
40	GO:0034337: RNA folding	3.44E-04
41	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.44E-04
42	GO:0000413: protein peptidyl-prolyl isomerization	3.48E-04
43	GO:0071482: cellular response to light stimulus	4.56E-04
44	GO:0006783: heme biosynthetic process	5.47E-04
45	GO:0006779: porphyrin-containing compound biosynthetic process	6.45E-04
46	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.51E-04
47	GO:0018026: peptidyl-lysine monomethylation	7.51E-04
48	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.51E-04
49	GO:0019684: photosynthesis, light reaction	8.68E-04
50	GO:0009089: lysine biosynthetic process via diaminopimelate	8.68E-04
51	GO:0006352: DNA-templated transcription, initiation	8.68E-04
52	GO:0045037: protein import into chloroplast stroma	9.90E-04
53	GO:0006954: inflammatory response	1.21E-03
54	GO:0006518: peptide metabolic process	1.21E-03
55	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.21E-03
56	GO:0045493: xylan catabolic process	1.21E-03
57	GO:0019344: cysteine biosynthetic process	1.74E-03
58	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.75E-03
59	GO:0006165: nucleoside diphosphate phosphorylation	1.75E-03
60	GO:0006228: UTP biosynthetic process	1.75E-03
61	GO:0006424: glutamyl-tRNA aminoacylation	1.75E-03
62	GO:0046739: transport of virus in multicellular host	1.75E-03
63	GO:0016556: mRNA modification	1.75E-03
64	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.75E-03
65	GO:2001141: regulation of RNA biosynthetic process	1.75E-03
66	GO:0010239: chloroplast mRNA processing	1.75E-03
67	GO:0006241: CTP biosynthetic process	1.75E-03
68	GO:0044206: UMP salvage	2.35E-03
69	GO:0006021: inositol biosynthetic process	2.35E-03
70	GO:0071483: cellular response to blue light	2.35E-03
71	GO:0006808: regulation of nitrogen utilization	2.35E-03
72	GO:0009765: photosynthesis, light harvesting	2.35E-03
73	GO:0006183: GTP biosynthetic process	2.35E-03
74	GO:0009306: protein secretion	2.74E-03
75	GO:0016117: carotenoid biosynthetic process	2.96E-03
76	GO:0043097: pyrimidine nucleoside salvage	3.00E-03
77	GO:0010236: plastoquinone biosynthetic process	3.00E-03
78	GO:0009247: glycolipid biosynthetic process	3.00E-03
79	GO:0055114: oxidation-reduction process	3.18E-03
80	GO:0008033: tRNA processing	3.20E-03
81	GO:0006655: phosphatidylglycerol biosynthetic process	3.71E-03
82	GO:0042793: transcription from plastid promoter	3.71E-03
83	GO:0006206: pyrimidine nucleobase metabolic process	3.71E-03
84	GO:0032973: amino acid export	3.71E-03
85	GO:0010190: cytochrome b6f complex assembly	3.71E-03
86	GO:0046855: inositol phosphate dephosphorylation	3.71E-03
87	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.47E-03
88	GO:0009854: oxidative photosynthetic carbon pathway	4.47E-03
89	GO:0010019: chloroplast-nucleus signaling pathway	4.47E-03
90	GO:0010555: response to mannitol	4.47E-03
91	GO:0009955: adaxial/abaxial pattern specification	4.47E-03
92	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.27E-03
93	GO:0006400: tRNA modification	5.27E-03
94	GO:0006401: RNA catabolic process	5.27E-03
95	GO:0009395: phospholipid catabolic process	5.27E-03
96	GO:0009772: photosynthetic electron transport in photosystem II	5.27E-03
97	GO:0043090: amino acid import	5.27E-03
98	GO:0009642: response to light intensity	6.13E-03
99	GO:0006402: mRNA catabolic process	6.13E-03
100	GO:0006605: protein targeting	6.13E-03
101	GO:0019375: galactolipid biosynthetic process	6.13E-03
102	GO:2000070: regulation of response to water deprivation	6.13E-03
103	GO:0048564: photosystem I assembly	6.13E-03
104	GO:0010497: plasmodesmata-mediated intercellular transport	7.03E-03
105	GO:0009657: plastid organization	7.03E-03
106	GO:0017004: cytochrome complex assembly	7.03E-03
107	GO:0009932: cell tip growth	7.03E-03
108	GO:0022900: electron transport chain	7.03E-03
109	GO:0080144: amino acid homeostasis	7.97E-03
110	GO:0048589: developmental growth	7.97E-03
111	GO:0006633: fatty acid biosynthetic process	8.55E-03
112	GO:0031425: chloroplast RNA processing	8.96E-03
113	GO:0010205: photoinhibition	8.96E-03
114	GO:0006535: cysteine biosynthetic process from serine	1.00E-02
115	GO:0006457: protein folding	1.07E-02
116	GO:0009773: photosynthetic electron transport in photosystem I	1.11E-02
117	GO:0009073: aromatic amino acid family biosynthetic process	1.11E-02
118	GO:0006415: translational termination	1.11E-02
119	GO:0018119: peptidyl-cysteine S-nitrosylation	1.11E-02
120	GO:0030001: metal ion transport	1.17E-02
121	GO:0008380: RNA splicing	1.21E-02
122	GO:0016024: CDP-diacylglycerol biosynthetic process	1.22E-02
123	GO:0006790: sulfur compound metabolic process	1.22E-02
124	GO:0010628: positive regulation of gene expression	1.33E-02
125	GO:0009767: photosynthetic electron transport chain	1.33E-02
126	GO:0009409: response to cold	1.40E-02
127	GO:0010020: chloroplast fission	1.45E-02
128	GO:0010207: photosystem II assembly	1.45E-02
129	GO:0010167: response to nitrate	1.58E-02
130	GO:0019853: L-ascorbic acid biosynthetic process	1.58E-02
131	GO:0090351: seedling development	1.58E-02
132	GO:0046854: phosphatidylinositol phosphorylation	1.58E-02
133	GO:0006636: unsaturated fatty acid biosynthetic process	1.70E-02
134	GO:0006364: rRNA processing	1.79E-02
135	GO:0000027: ribosomal large subunit assembly	1.83E-02
136	GO:0007010: cytoskeleton organization	1.83E-02
137	GO:0009116: nucleoside metabolic process	1.83E-02
138	GO:0006418: tRNA aminoacylation for protein translation	1.96E-02
139	GO:0061077: chaperone-mediated protein folding	2.10E-02
140	GO:0016226: iron-sulfur cluster assembly	2.24E-02
141	GO:0042742: defense response to bacterium	2.30E-02
142	GO:0009411: response to UV	2.38E-02
143	GO:0045454: cell redox homeostasis	2.76E-02
144	GO:0009741: response to brassinosteroid	2.99E-02
145	GO:0002229: defense response to oomycetes	3.47E-02
146	GO:0000302: response to reactive oxygen species	3.47E-02
147	GO:0009567: double fertilization forming a zygote and endosperm	3.98E-02
148	GO:0016036: cellular response to phosphate starvation	4.09E-02
149	GO:0009451: RNA modification	4.48E-02
150	GO:0046686: response to cadmium ion	4.79E-02
151	GO:0009627: systemic acquired resistance	4.87E-02
152	GO:0042128: nitrate assimilation	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
6	GO:0008887: glycerate kinase activity	0.00E+00
7	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
8	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
9	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
10	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
11	GO:0004823: leucine-tRNA ligase activity	0.00E+00
12	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
13	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
14	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
15	GO:0005048: signal sequence binding	0.00E+00
16	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
17	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
18	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
19	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
20	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
21	GO:0019843: rRNA binding	4.25E-33
22	GO:0003735: structural constituent of ribosome	3.65E-19
23	GO:0016851: magnesium chelatase activity	3.23E-10
24	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.41E-09
25	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.37E-06
26	GO:0070402: NADPH binding	1.89E-05
27	GO:0001053: plastid sigma factor activity	7.42E-05
28	GO:0016987: sigma factor activity	7.42E-05
29	GO:0003723: RNA binding	1.20E-04
30	GO:0005528: FK506 binding	1.47E-04
31	GO:0051920: peroxiredoxin activity	2.28E-04
32	GO:0003727: single-stranded RNA binding	2.81E-04
33	GO:0009374: biotin binding	3.44E-04
34	GO:0045485: omega-6 fatty acid desaturase activity	3.44E-04
35	GO:0004654: polyribonucleotide nucleotidyltransferase activity	3.44E-04
36	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.44E-04
37	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.44E-04
38	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.44E-04
39	GO:0004033: aldo-keto reductase (NADP) activity	3.72E-04
40	GO:0016209: antioxidant activity	3.72E-04
41	GO:0008934: inositol monophosphate 1-phosphatase activity	7.51E-04
42	GO:0052833: inositol monophosphate 4-phosphatase activity	7.51E-04
43	GO:0016630: protochlorophyllide reductase activity	7.51E-04
44	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.51E-04
45	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	7.51E-04
46	GO:0052832: inositol monophosphate 3-phosphatase activity	7.51E-04
47	GO:0002161: aminoacyl-tRNA editing activity	1.21E-03
48	GO:0004148: dihydrolipoyl dehydrogenase activity	1.21E-03
49	GO:0004751: ribose-5-phosphate isomerase activity	1.21E-03
50	GO:0017150: tRNA dihydrouridine synthase activity	1.21E-03
51	GO:0008266: poly(U) RNA binding	1.26E-03
52	GO:0035250: UDP-galactosyltransferase activity	1.75E-03
53	GO:0016149: translation release factor activity, codon specific	1.75E-03
54	GO:0004550: nucleoside diphosphate kinase activity	1.75E-03
55	GO:0043023: ribosomal large subunit binding	1.75E-03
56	GO:0008097: 5S rRNA binding	1.75E-03
57	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.75E-03
58	GO:0003729: mRNA binding	2.05E-03
59	GO:0009044: xylan 1,4-beta-xylosidase activity	2.35E-03
60	GO:0043495: protein anchor	2.35E-03
61	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.35E-03
62	GO:0046556: alpha-L-arabinofuranosidase activity	2.35E-03
63	GO:0004659: prenyltransferase activity	2.35E-03
64	GO:0016279: protein-lysine N-methyltransferase activity	2.35E-03
65	GO:0004845: uracil phosphoribosyltransferase activity	2.35E-03
66	GO:0003959: NADPH dehydrogenase activity	3.00E-03
67	GO:0030414: peptidase inhibitor activity	3.00E-03
68	GO:0004040: amidase activity	3.00E-03
69	GO:0003989: acetyl-CoA carboxylase activity	3.00E-03
70	GO:0003690: double-stranded DNA binding	3.20E-03
71	GO:0004130: cytochrome-c peroxidase activity	3.71E-03
72	GO:0016208: AMP binding	3.71E-03
73	GO:0004849: uridine kinase activity	4.47E-03
74	GO:0004124: cysteine synthase activity	4.47E-03
75	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.47E-03
76	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.47E-03
77	GO:0016491: oxidoreductase activity	4.59E-03
78	GO:0019899: enzyme binding	5.27E-03
79	GO:0016722: oxidoreductase activity, oxidizing metal ions	5.49E-03
80	GO:0008237: metallopeptidase activity	5.49E-03
81	GO:0008312: 7S RNA binding	6.13E-03
82	GO:0003747: translation release factor activity	7.97E-03
83	GO:0004222: metalloendopeptidase activity	8.89E-03
84	GO:0051539: 4 iron, 4 sulfur cluster binding	1.17E-02
85	GO:0000175: 3'-5'-exoribonuclease activity	1.33E-02
86	GO:0051537: 2 iron, 2 sulfur cluster binding	1.43E-02
87	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.45E-02
88	GO:0004601: peroxidase activity	1.68E-02
89	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.79E-02
90	GO:0051536: iron-sulfur cluster binding	1.83E-02
91	GO:0043424: protein histidine kinase binding	1.96E-02
92	GO:0004176: ATP-dependent peptidase activity	2.10E-02
93	GO:0022891: substrate-specific transmembrane transporter activity	2.38E-02
94	GO:0004812: aminoacyl-tRNA ligase activity	2.68E-02
95	GO:0008080: N-acetyltransferase activity	2.99E-02
96	GO:0016740: transferase activity	3.09E-02
97	GO:0010181: FMN binding	3.15E-02
98	GO:0030170: pyridoxal phosphate binding	3.54E-02
99	GO:0003924: GTPase activity	3.58E-02
100	GO:0000156: phosphorelay response regulator activity	3.81E-02
101	GO:0008565: protein transporter activity	3.81E-02
102	GO:0005507: copper ion binding	3.86E-02
103	GO:0009055: electron carrier activity	3.91E-02
104	GO:0005200: structural constituent of cytoskeleton	4.15E-02
105	GO:0008483: transaminase activity	4.15E-02
106	GO:0016168: chlorophyll binding	4.69E-02
107	GO:0005525: GTP binding	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009507: chloroplast	7.36E-103
4	GO:0009570: chloroplast stroma	9.68E-65
5	GO:0009941: chloroplast envelope	1.76E-56
6	GO:0009535: chloroplast thylakoid membrane	4.41E-29
7	GO:0009579: thylakoid	1.12E-28
8	GO:0009543: chloroplast thylakoid lumen	3.35E-24
9	GO:0005840: ribosome	3.63E-20
10	GO:0031977: thylakoid lumen	3.36E-19
11	GO:0009534: chloroplast thylakoid	3.87E-19
12	GO:0009536: plastid	1.05E-08
13	GO:0010007: magnesium chelatase complex	4.40E-08
14	GO:0009654: photosystem II oxygen evolving complex	1.88E-07
15	GO:0009706: chloroplast inner membrane	9.33E-07
16	GO:0000311: plastid large ribosomal subunit	1.61E-06
17	GO:0019898: extrinsic component of membrane	3.62E-05
18	GO:0031969: chloroplast membrane	4.54E-05
19	GO:0009508: plastid chromosome	7.45E-05
20	GO:0042651: thylakoid membrane	1.70E-04
21	GO:0015934: large ribosomal subunit	1.77E-04
22	GO:0009533: chloroplast stromal thylakoid	2.96E-04
23	GO:0009344: nitrite reductase complex [NAD(P)H]	3.44E-04
24	GO:0009547: plastid ribosome	3.44E-04
25	GO:0009295: nucleoid	6.98E-04
26	GO:0080085: signal recognition particle, chloroplast targeting	7.51E-04
27	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.51E-04
28	GO:0033281: TAT protein transport complex	1.21E-03
29	GO:0009509: chromoplast	1.21E-03
30	GO:0009317: acetyl-CoA carboxylase complex	1.21E-03
31	GO:0000312: plastid small ribosomal subunit	1.26E-03
32	GO:0030095: chloroplast photosystem II	1.26E-03
33	GO:0042646: plastid nucleoid	1.75E-03
34	GO:0022626: cytosolic ribosome	1.77E-03
35	GO:0015935: small ribosomal subunit	2.11E-03
36	GO:0046658: anchored component of plasma membrane	3.06E-03
37	GO:0009505: plant-type cell wall	4.12E-03
38	GO:0016363: nuclear matrix	4.47E-03
39	GO:0048046: apoplast	6.80E-03
40	GO:0009539: photosystem II reaction center	7.03E-03
41	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.03E-03
42	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.97E-03
43	GO:0005763: mitochondrial small ribosomal subunit	7.97E-03
44	GO:0032040: small-subunit processome	1.22E-02
45	GO:0005618: cell wall	2.01E-02
46	GO:0009532: plastid stroma	2.10E-02
47	GO:0022625: cytosolic large ribosomal subunit	2.35E-02
48	GO:0016020: membrane	2.73E-02
49	GO:0005623: cell	3.27E-02
50	GO:0009523: photosystem II	3.31E-02
51	GO:0005778: peroxisomal membrane	4.15E-02
52	GO:0031225: anchored component of membrane	4.40E-02
53	GO:0030529: intracellular ribonucleoprotein complex	4.51E-02