Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G10370

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
3GO:0006223: uracil salvage0.00E+00
4GO:0006642: triglyceride mobilization0.00E+00
5GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
6GO:0042821: pyridoxal biosynthetic process0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
9GO:0097164: ammonium ion metabolic process0.00E+00
10GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0070125: mitochondrial translational elongation0.00E+00
13GO:0006429: leucyl-tRNA aminoacylation0.00E+00
14GO:0010275: NAD(P)H dehydrogenase complex assembly0.00E+00
15GO:0002184: cytoplasmic translational termination0.00E+00
16GO:0006412: translation1.67E-12
17GO:0032544: plastid translation3.49E-11
18GO:0042254: ribosome biogenesis3.19E-10
19GO:0010027: thylakoid membrane organization4.96E-07
20GO:0009658: chloroplast organization7.64E-07
21GO:0009793: embryo development ending in seed dormancy4.42E-06
22GO:1901259: chloroplast rRNA processing8.12E-06
23GO:0032543: mitochondrial translation1.66E-04
24GO:0045038: protein import into chloroplast thylakoid membrane1.66E-04
25GO:0006655: phosphatidylglycerol biosynthetic process2.37E-04
26GO:0009735: response to cytokinin2.46E-04
27GO:0042372: phylloquinone biosynthetic process3.18E-04
28GO:0009443: pyridoxal 5'-phosphate salvage4.29E-04
29GO:1903409: reactive oxygen species biosynthetic process4.29E-04
30GO:0006438: valyl-tRNA aminoacylation4.29E-04
31GO:1904966: positive regulation of vitamin E biosynthetic process4.29E-04
32GO:0046166: glyceraldehyde-3-phosphate biosynthetic process4.29E-04
33GO:1904964: positive regulation of phytol biosynthetic process4.29E-04
34GO:0042371: vitamin K biosynthetic process4.29E-04
35GO:0043007: maintenance of rDNA4.29E-04
36GO:1902458: positive regulation of stomatal opening4.29E-04
37GO:0034337: RNA folding4.29E-04
38GO:0006353: DNA-templated transcription, termination5.13E-04
39GO:0009790: embryo development5.29E-04
40GO:0000413: protein peptidyl-prolyl isomerization5.29E-04
41GO:0071482: cellular response to light stimulus6.25E-04
42GO:0032502: developmental process8.29E-04
43GO:0010115: regulation of abscisic acid biosynthetic process9.27E-04
44GO:1902326: positive regulation of chlorophyll biosynthetic process9.27E-04
45GO:0070981: L-asparagine biosynthetic process9.27E-04
46GO:0045717: negative regulation of fatty acid biosynthetic process9.27E-04
47GO:0018026: peptidyl-lysine monomethylation9.27E-04
48GO:0006529: asparagine biosynthetic process9.27E-04
49GO:1903426: regulation of reactive oxygen species biosynthetic process9.27E-04
50GO:0006352: DNA-templated transcription, initiation1.18E-03
51GO:0016024: CDP-diacylglycerol biosynthetic process1.35E-03
52GO:0006954: inflammatory response1.51E-03
53GO:0019563: glycerol catabolic process1.51E-03
54GO:0006518: peptide metabolic process1.51E-03
55GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.51E-03
56GO:0051604: protein maturation1.51E-03
57GO:0032504: multicellular organism reproduction1.51E-03
58GO:0010207: photosystem II assembly1.73E-03
59GO:0010020: chloroplast fission1.73E-03
60GO:0006457: protein folding1.95E-03
61GO:0006241: CTP biosynthetic process2.18E-03
62GO:0006424: glutamyl-tRNA aminoacylation2.18E-03
63GO:0006165: nucleoside diphosphate phosphorylation2.18E-03
64GO:0046739: transport of virus in multicellular host2.18E-03
65GO:0006228: UTP biosynthetic process2.18E-03
66GO:0016556: mRNA modification2.18E-03
67GO:0055070: copper ion homeostasis2.18E-03
68GO:2001141: regulation of RNA biosynthetic process2.18E-03
69GO:0010239: chloroplast mRNA processing2.18E-03
70GO:0019344: cysteine biosynthetic process2.40E-03
71GO:0006418: tRNA aminoacylation for protein translation2.65E-03
72GO:0015979: photosynthesis2.83E-03
73GO:0016998: cell wall macromolecule catabolic process2.91E-03
74GO:0006183: GTP biosynthetic process2.93E-03
75GO:0006021: inositol biosynthetic process2.93E-03
76GO:0044206: UMP salvage2.93E-03
77GO:0071483: cellular response to blue light2.93E-03
78GO:0006808: regulation of nitrogen utilization2.93E-03
79GO:0009247: glycolipid biosynthetic process3.76E-03
80GO:0043097: pyrimidine nucleoside salvage3.76E-03
81GO:0006564: L-serine biosynthetic process3.76E-03
82GO:0010236: plastoquinone biosynthetic process3.76E-03
83GO:0035434: copper ion transmembrane transport3.76E-03
84GO:0016123: xanthophyll biosynthetic process3.76E-03
85GO:0009306: protein secretion3.79E-03
86GO:0080022: primary root development4.44E-03
87GO:0016554: cytidine to uridine editing4.65E-03
88GO:0042793: transcription from plastid promoter4.65E-03
89GO:0010190: cytochrome b6f complex assembly4.65E-03
90GO:0006206: pyrimidine nucleobase metabolic process4.65E-03
91GO:0032973: amino acid export4.65E-03
92GO:0018258: protein O-linked glycosylation via hydroxyproline4.65E-03
93GO:0009117: nucleotide metabolic process4.65E-03
94GO:0046855: inositol phosphate dephosphorylation4.65E-03
95GO:0006561: proline biosynthetic process4.65E-03
96GO:0010405: arabinogalactan protein metabolic process4.65E-03
97GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.65E-03
98GO:0042026: protein refolding5.60E-03
99GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.60E-03
100GO:0006458: 'de novo' protein folding5.60E-03
101GO:0030488: tRNA methylation5.60E-03
102GO:0009854: oxidative photosynthetic carbon pathway5.60E-03
103GO:0010555: response to mannitol5.60E-03
104GO:0009955: adaxial/abaxial pattern specification5.60E-03
105GO:0006821: chloride transport6.62E-03
106GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.62E-03
107GO:0010444: guard mother cell differentiation6.62E-03
108GO:0009610: response to symbiotic fungus6.62E-03
109GO:0006955: immune response6.62E-03
110GO:0009395: phospholipid catabolic process6.62E-03
111GO:0009772: photosynthetic electron transport in photosystem II6.62E-03
112GO:0043090: amino acid import6.62E-03
113GO:0009642: response to light intensity7.71E-03
114GO:0009690: cytokinin metabolic process7.71E-03
115GO:0042255: ribosome assembly7.71E-03
116GO:0006605: protein targeting7.71E-03
117GO:0019375: galactolipid biosynthetic process7.71E-03
118GO:0010078: maintenance of root meristem identity7.71E-03
119GO:2000070: regulation of response to water deprivation7.71E-03
120GO:0048564: photosystem I assembly7.71E-03
121GO:0010497: plasmodesmata-mediated intercellular transport8.84E-03
122GO:0043562: cellular response to nitrogen levels8.84E-03
123GO:0017004: cytochrome complex assembly8.84E-03
124GO:0010206: photosystem II repair1.00E-02
125GO:0080144: amino acid homeostasis1.00E-02
126GO:0006783: heme biosynthetic process1.00E-02
127GO:0015995: chlorophyll biosynthetic process1.01E-02
128GO:0018298: protein-chromophore linkage1.12E-02
129GO:1900865: chloroplast RNA modification1.13E-02
130GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process1.13E-02
131GO:0000160: phosphorelay signal transduction system1.18E-02
132GO:0006782: protoporphyrinogen IX biosynthetic process1.26E-02
133GO:0006535: cysteine biosynthetic process from serine1.26E-02
134GO:0009688: abscisic acid biosynthetic process1.26E-02
135GO:0009773: photosynthetic electron transport in photosystem I1.40E-02
136GO:0009073: aromatic amino acid family biosynthetic process1.40E-02
137GO:0006415: translational termination1.40E-02
138GO:0009750: response to fructose1.40E-02
139GO:0018119: peptidyl-cysteine S-nitrosylation1.40E-02
140GO:0030148: sphingolipid biosynthetic process1.40E-02
141GO:0009684: indoleacetic acid biosynthetic process1.40E-02
142GO:0045037: protein import into chloroplast stroma1.54E-02
143GO:0006790: sulfur compound metabolic process1.54E-02
144GO:0030001: metal ion transport1.63E-02
145GO:0010588: cotyledon vascular tissue pattern formation1.69E-02
146GO:0010628: positive regulation of gene expression1.69E-02
147GO:0050826: response to freezing1.69E-02
148GO:0006094: gluconeogenesis1.69E-02
149GO:0009767: photosynthetic electron transport chain1.69E-02
150GO:0006541: glutamine metabolic process1.84E-02
151GO:0019253: reductive pentose-phosphate cycle1.84E-02
152GO:0048467: gynoecium development1.84E-02
153GO:0019853: L-ascorbic acid biosynthetic process1.99E-02
154GO:0090351: seedling development1.99E-02
155GO:0046854: phosphatidylinositol phosphorylation1.99E-02
156GO:0000027: ribosomal large subunit assembly2.32E-02
157GO:0009116: nucleoside metabolic process2.32E-02
158GO:0009736: cytokinin-activated signaling pathway2.49E-02
159GO:0051603: proteolysis involved in cellular protein catabolic process2.57E-02
160GO:0061077: chaperone-mediated protein folding2.66E-02
161GO:0016114: terpenoid biosynthetic process2.66E-02
162GO:0019915: lipid storage2.66E-02
163GO:0016226: iron-sulfur cluster assembly2.84E-02
164GO:0006096: glycolytic process2.94E-02
165GO:0009411: response to UV3.02E-02
166GO:0019722: calcium-mediated signaling3.20E-02
167GO:0016117: carotenoid biosynthetic process3.39E-02
168GO:0042335: cuticle development3.58E-02
169GO:0008033: tRNA processing3.58E-02
170GO:0010087: phloem or xylem histogenesis3.58E-02
171GO:0009958: positive gravitropism3.78E-02
172GO:0010182: sugar mediated signaling pathway3.78E-02
173GO:0009646: response to absence of light3.98E-02
174GO:0045454: cell redox homeostasis4.15E-02
175GO:0048825: cotyledon development4.18E-02
176GO:0008654: phospholipid biosynthetic process4.18E-02
177GO:0009851: auxin biosynthetic process4.18E-02
178GO:0007264: small GTPase mediated signal transduction4.60E-02
RankGO TermAdjusted P value
1GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
2GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
3GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
4GO:0010301: xanthoxin dehydrogenase activity0.00E+00
5GO:0008887: glycerate kinase activity0.00E+00
6GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
7GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
8GO:0004823: leucine-tRNA ligase activity0.00E+00
9GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
10GO:0005048: signal sequence binding0.00E+00
11GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
12GO:0019843: rRNA binding1.67E-24
13GO:0003735: structural constituent of ribosome2.47E-14
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.98E-07
15GO:0016987: sigma factor activity1.07E-04
16GO:0001053: plastid sigma factor activity1.07E-04
17GO:0051920: peroxiredoxin activity3.18E-04
18GO:0001530: lipopolysaccharide binding4.29E-04
19GO:0042834: peptidoglycan binding4.29E-04
20GO:0047560: 3-dehydrosphinganine reductase activity4.29E-04
21GO:0004071: aspartate-ammonia ligase activity4.29E-04
22GO:0004853: uroporphyrinogen decarboxylase activity4.29E-04
23GO:0004832: valine-tRNA ligase activity4.29E-04
24GO:0004328: formamidase activity4.29E-04
25GO:0010347: L-galactose-1-phosphate phosphatase activity4.29E-04
26GO:0004807: triose-phosphate isomerase activity4.29E-04
27GO:0004033: aldo-keto reductase (NADP) activity5.13E-04
28GO:0016209: antioxidant activity5.13E-04
29GO:0080097: L-tryptophan:pyruvate aminotransferase activity9.27E-04
30GO:0008934: inositol monophosphate 1-phosphatase activity9.27E-04
31GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity9.27E-04
32GO:0052833: inositol monophosphate 4-phosphatase activity9.27E-04
33GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity9.27E-04
34GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity9.27E-04
35GO:0009977: proton motive force dependent protein transmembrane transporter activity9.27E-04
36GO:0004617: phosphoglycerate dehydrogenase activity9.27E-04
37GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity9.27E-04
38GO:0052832: inositol monophosphate 3-phosphatase activity9.27E-04
39GO:0016531: copper chaperone activity1.51E-03
40GO:0019829: cation-transporting ATPase activity1.51E-03
41GO:0017150: tRNA dihydrouridine synthase activity1.51E-03
42GO:0003913: DNA photolyase activity1.51E-03
43GO:0002161: aminoacyl-tRNA editing activity1.51E-03
44GO:0004148: dihydrolipoyl dehydrogenase activity1.51E-03
45GO:0070402: NADPH binding1.51E-03
46GO:0004022: alcohol dehydrogenase (NAD) activity1.54E-03
47GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.73E-03
48GO:0004222: metalloendopeptidase activity1.92E-03
49GO:0035529: NADH pyrophosphatase activity2.18E-03
50GO:0035250: UDP-galactosyltransferase activity2.18E-03
51GO:0016149: translation release factor activity, codon specific2.18E-03
52GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.18E-03
53GO:0016851: magnesium chelatase activity2.18E-03
54GO:0004550: nucleoside diphosphate kinase activity2.18E-03
55GO:0043023: ribosomal large subunit binding2.18E-03
56GO:0008097: 5S rRNA binding2.18E-03
57GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.18E-03
58GO:0005528: FK506 binding2.40E-03
59GO:0051536: iron-sulfur cluster binding2.40E-03
60GO:0043495: protein anchor2.93E-03
61GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.93E-03
62GO:0004659: prenyltransferase activity2.93E-03
63GO:0016279: protein-lysine N-methyltransferase activity2.93E-03
64GO:0004845: uracil phosphoribosyltransferase activity2.93E-03
65GO:0016836: hydro-lyase activity2.93E-03
66GO:0016846: carbon-sulfur lyase activity3.76E-03
67GO:0004040: amidase activity3.76E-03
68GO:0004812: aminoacyl-tRNA ligase activity4.10E-03
69GO:0016208: AMP binding4.65E-03
70GO:0016462: pyrophosphatase activity4.65E-03
71GO:0005247: voltage-gated chloride channel activity4.65E-03
72GO:0004605: phosphatidate cytidylyltransferase activity4.65E-03
73GO:0080030: methyl indole-3-acetate esterase activity4.65E-03
74GO:1990714: hydroxyproline O-galactosyltransferase activity4.65E-03
75GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.60E-03
76GO:0051753: mannan synthase activity5.60E-03
77GO:0004849: uridine kinase activity5.60E-03
78GO:0004124: cysteine synthase activity5.60E-03
79GO:0009881: photoreceptor activity6.62E-03
80GO:0019899: enzyme binding6.62E-03
81GO:0000156: phosphorelay response regulator activity6.74E-03
82GO:0008312: 7S RNA binding7.71E-03
83GO:0016597: amino acid binding8.09E-03
84GO:0005375: copper ion transmembrane transporter activity8.84E-03
85GO:0016491: oxidoreductase activity9.35E-03
86GO:0003747: translation release factor activity1.00E-02
87GO:0008236: serine-type peptidase activity1.07E-02
88GO:0008794: arsenate reductase (glutaredoxin) activity1.40E-02
89GO:0044183: protein binding involved in protein folding1.40E-02
90GO:0003993: acid phosphatase activity1.49E-02
91GO:0003924: GTPase activity1.60E-02
92GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.69E-02
93GO:0031072: heat shock protein binding1.69E-02
94GO:0004519: endonuclease activity1.82E-02
95GO:0008266: poly(U) RNA binding1.84E-02
96GO:0004185: serine-type carboxypeptidase activity1.84E-02
97GO:0051119: sugar transmembrane transporter activity1.99E-02
98GO:0003723: RNA binding2.39E-02
99GO:0043424: protein histidine kinase binding2.49E-02
100GO:0008324: cation transmembrane transporter activity2.49E-02
101GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.49E-02
102GO:0003690: double-stranded DNA binding2.57E-02
103GO:0016788: hydrolase activity, acting on ester bonds2.61E-02
104GO:0005525: GTP binding2.83E-02
105GO:0022891: substrate-specific transmembrane transporter activity3.02E-02
106GO:0003729: mRNA binding3.12E-02
107GO:0003727: single-stranded RNA binding3.20E-02
108GO:0051082: unfolded protein binding3.54E-02
109GO:0008080: N-acetyltransferase activity3.78E-02
110GO:0003713: transcription coactivator activity3.78E-02
111GO:0050662: coenzyme binding3.98E-02
112GO:0010181: FMN binding3.98E-02
113GO:0016758: transferase activity, transferring hexosyl groups4.30E-02
114GO:0016762: xyloglucan:xyloglucosyl transferase activity4.39E-02
115GO:0048038: quinone binding4.39E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0000408: EKC/KEOPS complex0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009571: proplastid stroma0.00E+00
5GO:0009507: chloroplast8.80E-68
6GO:0009570: chloroplast stroma1.95E-46
7GO:0009941: chloroplast envelope2.81E-33
8GO:0009535: chloroplast thylakoid membrane8.03E-19
9GO:0009579: thylakoid2.54E-15
10GO:0009543: chloroplast thylakoid lumen4.27E-15
11GO:0005840: ribosome4.49E-14
12GO:0031977: thylakoid lumen3.24E-10
13GO:0009534: chloroplast thylakoid7.70E-10
14GO:0009536: plastid9.10E-08
15GO:0009295: nucleoid1.23E-04
16GO:0000312: plastid small ribosomal subunit1.45E-04
17GO:0009706: chloroplast inner membrane2.60E-04
18GO:0042651: thylakoid membrane2.67E-04
19GO:0009654: photosystem II oxygen evolving complex2.67E-04
20GO:0009533: chloroplast stromal thylakoid4.10E-04
21GO:0009547: plastid ribosome4.29E-04
22GO:0019898: extrinsic component of membrane6.99E-04
23GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.50E-04
24GO:0080085: signal recognition particle, chloroplast targeting9.27E-04
25GO:0000427: plastid-encoded plastid RNA polymerase complex9.27E-04
26GO:0000311: plastid large ribosomal subunit1.35E-03
27GO:0016020: membrane1.36E-03
28GO:0033281: TAT protein transport complex1.51E-03
29GO:0010007: magnesium chelatase complex1.51E-03
30GO:0009509: chromoplast1.51E-03
31GO:0009508: plastid chromosome1.54E-03
32GO:0031969: chloroplast membrane2.24E-03
33GO:0015935: small ribosomal subunit2.91E-03
34GO:0009526: plastid envelope2.93E-03
35GO:0022626: cytosolic ribosome3.41E-03
36GO:0055035: plastid thylakoid membrane3.76E-03
37GO:0034707: chloride channel complex4.65E-03
38GO:0046658: anchored component of plasma membrane5.04E-03
39GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.84E-03
40GO:0005763: mitochondrial small ribosomal subunit1.00E-02
41GO:0015934: large ribosomal subunit1.30E-02
42GO:0032040: small-subunit processome1.54E-02
43GO:0030095: chloroplast photosystem II1.84E-02
44GO:0022627: cytosolic small ribosomal subunit2.09E-02
45GO:0009505: plant-type cell wall2.27E-02
46GO:0009532: plastid stroma2.66E-02
47GO:0022625: cytosolic large ribosomal subunit3.54E-02
48GO:0009523: photosystem II4.18E-02
49GO:0010287: plastoglobule4.19E-02
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Gene type



Gene DE type