co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G09640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
2	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
3	GO:0019307: mannose biosynthetic process	0.00E+00
4	GO:0072321: chaperone-mediated protein transport	0.00E+00
5	GO:0080056: petal vascular tissue pattern formation	0.00E+00
6	GO:0045047: protein targeting to ER	0.00E+00
7	GO:0042254: ribosome biogenesis	8.82E-09
8	GO:0006412: translation	2.50E-07
9	GO:1990258: histone glutamine methylation	9.64E-06
10	GO:0000494: box C/D snoRNA 3'-end processing	9.64E-06
11	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.58E-05
12	GO:0006013: mannose metabolic process	4.69E-05
13	GO:0055074: calcium ion homeostasis	4.69E-05
14	GO:0045039: protein import into mitochondrial inner membrane	4.69E-05
15	GO:0006168: adenine salvage	7.16E-05
16	GO:0009298: GDP-mannose biosynthetic process	7.16E-05
17	GO:0006166: purine ribonucleoside salvage	7.16E-05
18	GO:0007276: gamete generation	7.16E-05
19	GO:0031167: rRNA methylation	1.30E-04
20	GO:0018279: protein N-linked glycosylation via asparagine	1.30E-04
21	GO:0044209: AMP salvage	1.30E-04
22	GO:0006364: rRNA processing	1.69E-04
23	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	2.34E-04
24	GO:0042255: ribosome assembly	2.72E-04
25	GO:0009690: cytokinin metabolic process	2.72E-04
26	GO:0006605: protein targeting	2.72E-04
27	GO:0001510: RNA methylation	3.11E-04
28	GO:0006626: protein targeting to mitochondrion	5.68E-04
29	GO:0010588: cotyledon vascular tissue pattern formation	5.68E-04
30	GO:0019853: L-ascorbic acid biosynthetic process	6.61E-04
31	GO:0000027: ribosomal large subunit assembly	7.58E-04
32	GO:0006487: protein N-linked glycosylation	7.58E-04
33	GO:0009116: nucleoside metabolic process	7.58E-04
34	GO:0051302: regulation of cell division	8.07E-04
35	GO:0008033: tRNA processing	1.12E-03
36	GO:0010305: leaf vascular tissue pattern formation	1.18E-03
37	GO:0032502: developmental process	1.41E-03
38	GO:0009744: response to sucrose	2.85E-03
39	GO:0009664: plant-type cell wall organization	3.32E-03
40	GO:0009846: pollen germination	3.32E-03
41	GO:0010224: response to UV-B	3.57E-03
42	GO:0048367: shoot system development	3.99E-03
43	GO:0009790: embryo development	5.75E-03
44	GO:0006413: translational initiation	6.15E-03
45	GO:0046686: response to cadmium ion	6.16E-03
46	GO:0007623: circadian rhythm	6.45E-03
47	GO:0009826: unidimensional cell growth	8.51E-03
48	GO:0009793: embryo development ending in seed dormancy	9.14E-03
49	GO:0048366: leaf development	9.80E-03
50	GO:0006886: intracellular protein transport	1.18E-02
51	GO:0009651: response to salt stress	1.33E-02
52	GO:0048364: root development	1.38E-02
53	GO:0006457: protein folding	2.42E-02
54	GO:0006979: response to oxidative stress	3.35E-02

Rank	GO Term	Adjusted P value
1	GO:0004615: phosphomannomutase activity	0.00E+00
2	GO:0003735: structural constituent of ribosome	8.36E-09
3	GO:1990259: histone-glutamine methyltransferase activity	9.64E-06
4	GO:0043021: ribonucleoprotein complex binding	2.58E-05
5	GO:0008649: rRNA methyltransferase activity	4.69E-05
6	GO:0070180: large ribosomal subunit rRNA binding	4.69E-05
7	GO:0003999: adenine phosphoribosyltransferase activity	7.16E-05
8	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.30E-04
9	GO:0031369: translation initiation factor binding	1.63E-04
10	GO:0030515: snoRNA binding	2.34E-04
11	GO:0008121: ubiquinol-cytochrome-c reductase activity	2.34E-04
12	GO:0003729: mRNA binding	7.44E-04
13	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.05E-03
14	GO:0003746: translation elongation factor activity	2.40E-03
15	GO:0051082: unfolded protein binding	4.43E-03
16	GO:0008565: protein transporter activity	5.85E-03
17	GO:0003723: RNA binding	5.92E-03
18	GO:0003743: translation initiation factor activity	7.19E-03
19	GO:0003924: GTPase activity	1.34E-02
20	GO:0000166: nucleotide binding	2.01E-02
21	GO:0030246: carbohydrate binding	2.49E-02
22	GO:0005507: copper ion binding	2.59E-02
23	GO:0005516: calmodulin binding	2.69E-02
24	GO:0005509: calcium ion binding	3.14E-02

Rank	GO Term	Adjusted P value
1	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
2	GO:0005840: ribosome	8.33E-10
3	GO:0005730: nucleolus	1.77E-07
4	GO:0022625: cytosolic large ribosomal subunit	1.15E-06
5	GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m	9.64E-06
6	GO:0070545: PeBoW complex	2.58E-05
7	GO:0008250: oligosaccharyltransferase complex	1.30E-04
8	GO:0031428: box C/D snoRNP complex	1.63E-04
9	GO:0022626: cytosolic ribosome	1.68E-04
10	GO:0030687: preribosome, large subunit precursor	2.34E-04
11	GO:0015030: Cajal body	3.93E-04
12	GO:0005852: eukaryotic translation initiation factor 3 complex	4.78E-04
13	GO:0032040: small-subunit processome	5.23E-04
14	GO:0022627: cytosolic small ribosomal subunit	5.53E-04
15	GO:0005773: vacuole	5.95E-04
16	GO:0005750: mitochondrial respiratory chain complex III	6.14E-04
17	GO:0005758: mitochondrial intermembrane space	7.58E-04
18	GO:0005788: endoplasmic reticulum lumen	1.78E-03
19	GO:0005774: vacuolar membrane	2.12E-03
20	GO:0009506: plasmodesma	2.35E-03
21	GO:0009505: plant-type cell wall	4.96E-03
22	GO:0005623: cell	5.27E-03
23	GO:0005829: cytosol	6.14E-03
24	GO:0005737: cytoplasm	7.04E-03
25	GO:0005743: mitochondrial inner membrane	1.27E-02
26	GO:0016020: membrane	1.94E-02
27	GO:0005783: endoplasmic reticulum	2.78E-02
28	GO:0005622: intracellular	3.03E-02
29	GO:0005789: endoplasmic reticulum membrane	4.50E-02
30	GO:0009507: chloroplast	4.79E-02