co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G09340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034337: RNA folding	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
5	GO:0061635: regulation of protein complex stability	0.00E+00
6	GO:0016553: base conversion or substitution editing	0.00E+00
7	GO:0042821: pyridoxal biosynthetic process	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
10	GO:0006399: tRNA metabolic process	0.00E+00
11	GO:0015979: photosynthesis	5.44E-32
12	GO:0009735: response to cytokinin	1.41E-14
13	GO:0015995: chlorophyll biosynthetic process	5.70E-11
14	GO:0006412: translation	6.78E-11
15	GO:0009773: photosynthetic electron transport in photosystem I	8.15E-10
16	GO:0010207: photosystem II assembly	3.46E-09
17	GO:0042254: ribosome biogenesis	1.16E-08
18	GO:0010196: nonphotochemical quenching	2.27E-07
19	GO:0010206: photosystem II repair	1.08E-06
20	GO:0015976: carbon utilization	1.49E-06
21	GO:0019253: reductive pentose-phosphate cycle	8.29E-06
22	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.01E-05
23	GO:0009409: response to cold	1.48E-05
24	GO:0010027: thylakoid membrane organization	1.64E-05
25	GO:0018298: protein-chromophore linkage	3.13E-05
26	GO:0006000: fructose metabolic process	3.43E-05
27	GO:0090391: granum assembly	3.43E-05
28	GO:0009657: plastid organization	3.54E-05
29	GO:0032544: plastid translation	3.54E-05
30	GO:2001141: regulation of RNA biosynthetic process	7.39E-05
31	GO:0042742: defense response to bacterium	7.81E-05
32	GO:0010114: response to red light	9.54E-05
33	GO:0009658: chloroplast organization	9.84E-05
34	GO:0019464: glycine decarboxylation via glycine cleavage system	1.29E-04
35	GO:2000122: negative regulation of stomatal complex development	1.29E-04
36	GO:0006546: glycine catabolic process	1.29E-04
37	GO:0010037: response to carbon dioxide	1.29E-04
38	GO:0006636: unsaturated fatty acid biosynthetic process	2.51E-04
39	GO:0042549: photosystem II stabilization	2.80E-04
40	GO:0009768: photosynthesis, light harvesting in photosystem I	3.32E-04
41	GO:0055114: oxidation-reduction process	3.39E-04
42	GO:0010019: chloroplast-nucleus signaling pathway	3.75E-04
43	GO:0071588: hydrogen peroxide mediated signaling pathway	4.78E-04
44	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	4.78E-04
45	GO:0009443: pyridoxal 5'-phosphate salvage	4.78E-04
46	GO:0043489: RNA stabilization	4.78E-04
47	GO:1904966: positive regulation of vitamin E biosynthetic process	4.78E-04
48	GO:0071370: cellular response to gibberellin stimulus	4.78E-04
49	GO:0000481: maturation of 5S rRNA	4.78E-04
50	GO:1904964: positive regulation of phytol biosynthetic process	4.78E-04
51	GO:0071461: cellular response to redox state	4.78E-04
52	GO:0009772: photosynthetic electron transport in photosystem II	4.82E-04
53	GO:0000413: protein peptidyl-prolyl isomerization	6.51E-04
54	GO:0006002: fructose 6-phosphate metabolic process	7.33E-04
55	GO:0071482: cellular response to light stimulus	7.33E-04
56	GO:0010205: photoinhibition	1.03E-03
57	GO:0080005: photosystem stoichiometry adjustment	1.03E-03
58	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.03E-03
59	GO:0034755: iron ion transmembrane transport	1.03E-03
60	GO:0018026: peptidyl-lysine monomethylation	1.03E-03
61	GO:0019684: photosynthesis, light reaction	1.39E-03
62	GO:0006352: DNA-templated transcription, initiation	1.39E-03
63	GO:0018119: peptidyl-cysteine S-nitrosylation	1.39E-03
64	GO:0006518: peptide metabolic process	1.68E-03
65	GO:0045493: xylan catabolic process	1.68E-03
66	GO:0006094: gluconeogenesis	1.80E-03
67	GO:0009767: photosynthetic electron transport chain	1.80E-03
68	GO:0005986: sucrose biosynthetic process	1.80E-03
69	GO:0006006: glucose metabolic process	1.80E-03
70	GO:0005985: sucrose metabolic process	2.28E-03
71	GO:0010218: response to far red light	2.37E-03
72	GO:0051513: regulation of monopolar cell growth	2.44E-03
73	GO:0071484: cellular response to light intensity	2.44E-03
74	GO:0009152: purine ribonucleotide biosynthetic process	2.44E-03
75	GO:0046653: tetrahydrofolate metabolic process	2.44E-03
76	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.44E-03
77	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.44E-03
78	GO:0010731: protein glutathionylation	2.44E-03
79	GO:0055070: copper ion homeostasis	2.44E-03
80	GO:0009637: response to blue light	2.83E-03
81	GO:0009853: photorespiration	2.83E-03
82	GO:0034599: cellular response to oxidative stress	2.99E-03
83	GO:0019676: ammonia assimilation cycle	3.28E-03
84	GO:0009765: photosynthesis, light harvesting	3.28E-03
85	GO:0045727: positive regulation of translation	3.28E-03
86	GO:0015994: chlorophyll metabolic process	3.28E-03
87	GO:0006542: glutamine biosynthetic process	3.28E-03
88	GO:0006461: protein complex assembly	4.21E-03
89	GO:0009247: glycolipid biosynthetic process	4.21E-03
90	GO:0034052: positive regulation of plant-type hypersensitive response	4.21E-03
91	GO:0032543: mitochondrial translation	4.21E-03
92	GO:0031365: N-terminal protein amino acid modification	4.21E-03
93	GO:0006655: phosphatidylglycerol biosynthetic process	5.21E-03
94	GO:0010190: cytochrome b6f complex assembly	5.21E-03
95	GO:0032973: amino acid export	5.21E-03
96	GO:0010555: response to mannitol	6.28E-03
97	GO:0071470: cellular response to osmotic stress	6.28E-03
98	GO:0017148: negative regulation of translation	6.28E-03
99	GO:1901259: chloroplast rRNA processing	6.28E-03
100	GO:0010189: vitamin E biosynthetic process	6.28E-03
101	GO:0009854: oxidative photosynthetic carbon pathway	6.28E-03
102	GO:0000302: response to reactive oxygen species	6.97E-03
103	GO:0043090: amino acid import	7.43E-03
104	GO:0009645: response to low light intensity stimulus	7.43E-03
105	GO:0009769: photosynthesis, light harvesting in photosystem II	7.43E-03
106	GO:0050829: defense response to Gram-negative bacterium	7.43E-03
107	GO:0006400: tRNA modification	7.43E-03
108	GO:0048564: photosystem I assembly	8.65E-03
109	GO:0009819: drought recovery	8.65E-03
110	GO:0009642: response to light intensity	8.65E-03
111	GO:0009850: auxin metabolic process	8.65E-03
112	GO:0043068: positive regulation of programmed cell death	8.65E-03
113	GO:0042255: ribosome assembly	8.65E-03
114	GO:0019375: galactolipid biosynthetic process	8.65E-03
115	GO:0032508: DNA duplex unwinding	8.65E-03
116	GO:0017004: cytochrome complex assembly	9.94E-03
117	GO:0042128: nitrate assimilation	1.13E-02
118	GO:0009051: pentose-phosphate shunt, oxidative branch	1.13E-02
119	GO:0080144: amino acid homeostasis	1.13E-02
120	GO:0006783: heme biosynthetic process	1.13E-02
121	GO:0000373: Group II intron splicing	1.13E-02
122	GO:0009638: phototropism	1.27E-02
123	GO:0009817: defense response to fungus, incompatible interaction	1.32E-02
124	GO:0006949: syncytium formation	1.42E-02
125	GO:0006782: protoporphyrinogen IX biosynthetic process	1.42E-02
126	GO:0007568: aging	1.53E-02
127	GO:0010119: regulation of stomatal movement	1.53E-02
128	GO:0009631: cold acclimation	1.53E-02
129	GO:0009698: phenylpropanoid metabolic process	1.57E-02
130	GO:0009089: lysine biosynthetic process via diaminopimelate	1.57E-02
131	GO:0043085: positive regulation of catalytic activity	1.57E-02
132	GO:0006879: cellular iron ion homeostasis	1.57E-02
133	GO:0009750: response to fructose	1.57E-02
134	GO:0016024: CDP-diacylglycerol biosynthetic process	1.73E-02
135	GO:0010628: positive regulation of gene expression	1.90E-02
136	GO:0010143: cutin biosynthetic process	2.07E-02
137	GO:0010020: chloroplast fission	2.07E-02
138	GO:0009744: response to sucrose	2.17E-02
139	GO:0006397: mRNA processing	2.18E-02
140	GO:0046688: response to copper ion	2.24E-02
141	GO:0010167: response to nitrate	2.24E-02
142	GO:0009644: response to high light intensity	2.35E-02
143	GO:0019344: cysteine biosynthetic process	2.61E-02
144	GO:0000027: ribosomal large subunit assembly	2.61E-02
145	GO:0048511: rhythmic process	2.99E-02
146	GO:0061077: chaperone-mediated protein folding	2.99E-02
147	GO:0009269: response to desiccation	2.99E-02
148	GO:0031408: oxylipin biosynthetic process	2.99E-02
149	GO:0010017: red or far-red light signaling pathway	3.19E-02
150	GO:0009814: defense response, incompatible interaction	3.19E-02
151	GO:0016226: iron-sulfur cluster assembly	3.19E-02
152	GO:0006417: regulation of translation	3.25E-02
153	GO:0006012: galactose metabolic process	3.40E-02
154	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.40E-02
155	GO:0009411: response to UV	3.40E-02
156	GO:0006096: glycolytic process	3.47E-02
157	GO:0006284: base-excision repair	3.60E-02
158	GO:0080022: primary root development	4.03E-02
159	GO:0042545: cell wall modification	4.04E-02
160	GO:0080167: response to karrikin	4.08E-02
161	GO:0006810: transport	4.12E-02
162	GO:0009793: embryo development ending in seed dormancy	4.22E-02
163	GO:0009958: positive gravitropism	4.25E-02
164	GO:0006396: RNA processing	4.29E-02
165	GO:0042752: regulation of circadian rhythm	4.48E-02
166	GO:0015986: ATP synthesis coupled proton transport	4.48E-02
167	GO:0046686: response to cadmium ion	4.59E-02
168	GO:0009749: response to glucose	4.71E-02
169	GO:0019252: starch biosynthetic process	4.71E-02
170	GO:0009416: response to light stimulus	4.74E-02
171	GO:0002229: defense response to oomycetes	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0051738: xanthophyll binding	0.00E+00
2	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
5	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
6	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
7	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
8	GO:0008887: glycerate kinase activity	0.00E+00
9	GO:0045550: geranylgeranyl reductase activity	0.00E+00
10	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
11	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
12	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
13	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
14	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
15	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
16	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
17	GO:0019843: rRNA binding	4.70E-19
18	GO:0003735: structural constituent of ribosome	1.46E-13
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.07E-09
20	GO:0016168: chlorophyll binding	3.79E-08
21	GO:0005528: FK506 binding	5.27E-07
22	GO:0008266: poly(U) RNA binding	8.29E-06
23	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.01E-05
24	GO:0051920: peroxiredoxin activity	1.07E-05
25	GO:0016209: antioxidant activity	2.51E-05
26	GO:0004375: glycine dehydrogenase (decarboxylating) activity	7.39E-05
27	GO:0016851: magnesium chelatase activity	7.39E-05
28	GO:0001053: plastid sigma factor activity	1.29E-04
29	GO:0016987: sigma factor activity	1.29E-04
30	GO:0004089: carbonate dehydratase activity	1.53E-04
31	GO:0003959: NADPH dehydrogenase activity	1.98E-04
32	GO:0005509: calcium ion binding	2.24E-04
33	GO:0031409: pigment binding	2.51E-04
34	GO:0004130: cytochrome-c peroxidase activity	2.80E-04
35	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.75E-04
36	GO:0022891: substrate-specific transmembrane transporter activity	4.76E-04
37	GO:0046906: tetrapyrrole binding	4.78E-04
38	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	4.78E-04
39	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	4.78E-04
40	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	4.78E-04
41	GO:0004853: uroporphyrinogen decarboxylase activity	4.78E-04
42	GO:0045485: omega-6 fatty acid desaturase activity	4.78E-04
43	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.78E-04
44	GO:0019899: enzyme binding	4.82E-04
45	GO:0004033: aldo-keto reductase (NADP) activity	6.01E-04
46	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.33E-04
47	GO:0047746: chlorophyllase activity	1.03E-03
48	GO:0042389: omega-3 fatty acid desaturase activity	1.03E-03
49	GO:0004618: phosphoglycerate kinase activity	1.03E-03
50	GO:0004047: aminomethyltransferase activity	1.03E-03
51	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	1.03E-03
52	GO:0016630: protochlorophyllide reductase activity	1.03E-03
53	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.03E-03
54	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	1.03E-03
55	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.03E-03
56	GO:0008967: phosphoglycolate phosphatase activity	1.03E-03
57	GO:0008864: formyltetrahydrofolate deformylase activity	1.68E-03
58	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.68E-03
59	GO:0004324: ferredoxin-NADP+ reductase activity	1.68E-03
60	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.68E-03
61	GO:0050734: hydroxycinnamoyltransferase activity	1.68E-03
62	GO:0004751: ribose-5-phosphate isomerase activity	1.68E-03
63	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.68E-03
64	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.68E-03
65	GO:0070402: NADPH binding	1.68E-03
66	GO:0035250: UDP-galactosyltransferase activity	2.44E-03
67	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.44E-03
68	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.28E-03
69	GO:0004045: aminoacyl-tRNA hydrolase activity	3.28E-03
70	GO:1990137: plant seed peroxidase activity	3.28E-03
71	GO:0009044: xylan 1,4-beta-xylosidase activity	3.28E-03
72	GO:0043495: protein anchor	3.28E-03
73	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	3.28E-03
74	GO:0046556: alpha-L-arabinofuranosidase activity	3.28E-03
75	GO:0004659: prenyltransferase activity	3.28E-03
76	GO:0016279: protein-lysine N-methyltransferase activity	3.28E-03
77	GO:0004356: glutamate-ammonia ligase activity	4.21E-03
78	GO:0008725: DNA-3-methyladenine glycosylase activity	4.21E-03
79	GO:0051537: 2 iron, 2 sulfur cluster binding	4.33E-03
80	GO:0003727: single-stranded RNA binding	4.46E-03
81	GO:0016491: oxidoreductase activity	5.00E-03
82	GO:0042578: phosphoric ester hydrolase activity	5.21E-03
83	GO:0016688: L-ascorbate peroxidase activity	5.21E-03
84	GO:0004602: glutathione peroxidase activity	6.28E-03
85	GO:0008235: metalloexopeptidase activity	7.43E-03
86	GO:0004601: peroxidase activity	8.23E-03
87	GO:0004564: beta-fructofuranosidase activity	8.65E-03
88	GO:0004034: aldose 1-epimerase activity	8.65E-03
89	GO:0008236: serine-type peptidase activity	1.26E-02
90	GO:0004575: sucrose alpha-glucosidase activity	1.27E-02
91	GO:0005381: iron ion transmembrane transporter activity	1.27E-02
92	GO:0004222: metalloendopeptidase activity	1.46E-02
93	GO:0004177: aminopeptidase activity	1.57E-02
94	GO:0003729: mRNA binding	1.72E-02
95	GO:0031072: heat shock protein binding	1.90E-02
96	GO:0050661: NADP binding	1.92E-02
97	GO:0051539: 4 iron, 4 sulfur cluster binding	1.92E-02
98	GO:0004364: glutathione transferase activity	2.09E-02
99	GO:0051536: iron-sulfur cluster binding	2.61E-02
100	GO:0043424: protein histidine kinase binding	2.80E-02
101	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.93E-02
102	GO:0004707: MAP kinase activity	2.99E-02
103	GO:0004176: ATP-dependent peptidase activity	2.99E-02
104	GO:0003690: double-stranded DNA binding	3.04E-02
105	GO:0045330: aspartyl esterase activity	3.25E-02
106	GO:0003756: protein disulfide isomerase activity	3.60E-02
107	GO:0004650: polygalacturonase activity	3.81E-02
108	GO:0030599: pectinesterase activity	3.92E-02
109	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	4.25E-02
110	GO:0016853: isomerase activity	4.48E-02
111	GO:0050662: coenzyme binding	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
4	GO:0009515: granal stacked thylakoid	0.00E+00
5	GO:0044391: ribosomal subunit	0.00E+00
6	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
7	GO:0009507: chloroplast	1.06E-114
8	GO:0009535: chloroplast thylakoid membrane	1.71E-83
9	GO:0009534: chloroplast thylakoid	4.91E-65
10	GO:0009941: chloroplast envelope	8.72E-63
11	GO:0009579: thylakoid	8.77E-62
12	GO:0009570: chloroplast stroma	1.32E-56
13	GO:0009543: chloroplast thylakoid lumen	2.02E-41
14	GO:0031977: thylakoid lumen	1.86E-28
15	GO:0005840: ribosome	1.80E-15
16	GO:0030095: chloroplast photosystem II	4.47E-15
17	GO:0009654: photosystem II oxygen evolving complex	5.32E-14
18	GO:0019898: extrinsic component of membrane	2.75E-12
19	GO:0010287: plastoglobule	5.77E-12
20	GO:0009523: photosystem II	5.66E-09
21	GO:0010319: stromule	1.97E-08
22	GO:0048046: apoplast	8.21E-08
23	GO:0009538: photosystem I reaction center	4.07E-07
24	GO:0031969: chloroplast membrane	3.68E-06
25	GO:0009522: photosystem I	4.41E-06
26	GO:0000311: plastid large ribosomal subunit	4.68E-06
27	GO:0009706: chloroplast inner membrane	4.89E-06
28	GO:0009533: chloroplast stromal thylakoid	1.69E-05
29	GO:0010007: magnesium chelatase complex	3.43E-05
30	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.82E-05
31	GO:0005960: glycine cleavage complex	7.39E-05
32	GO:0009517: PSII associated light-harvesting complex II	1.29E-04
33	GO:0016020: membrane	3.21E-04
34	GO:0042651: thylakoid membrane	3.32E-04
35	GO:0015935: small ribosomal subunit	3.76E-04
36	GO:0015934: large ribosomal subunit	3.96E-04
37	GO:0009547: plastid ribosome	4.78E-04
38	GO:0009783: photosystem II antenna complex	4.78E-04
39	GO:0042170: plastid membrane	1.03E-03
40	GO:0030529: intracellular ribonucleoprotein complex	1.49E-03
41	GO:0032040: small-subunit processome	1.59E-03
42	GO:0030076: light-harvesting complex	2.28E-03
43	GO:0005775: vacuolar lumen	2.44E-03
44	GO:0042646: plastid nucleoid	2.44E-03
45	GO:0055035: plastid thylakoid membrane	4.21E-03
46	GO:0022626: cytosolic ribosome	4.73E-03
47	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	5.21E-03
48	GO:0016363: nuclear matrix	6.28E-03
49	GO:0009295: nucleoid	9.00E-03
50	GO:0005811: lipid particle	9.94E-03
51	GO:0005763: mitochondrial small ribosomal subunit	1.13E-02
52	GO:0042644: chloroplast nucleoid	1.13E-02
53	GO:0009508: plastid chromosome	1.90E-02
54	GO:0000312: plastid small ribosomal subunit	2.07E-02
55	GO:0005618: cell wall	2.84E-02
56	GO:0009536: plastid	2.97E-02
57	GO:0009532: plastid stroma	2.99E-02