Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G08980

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042493: response to drug0.00E+00
2GO:2000505: regulation of energy homeostasis0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:2000121: regulation of removal of superoxide radicals0.00E+00
6GO:0046322: negative regulation of fatty acid oxidation0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0090042: tubulin deacetylation0.00E+00
9GO:0034220: ion transmembrane transport4.38E-06
10GO:0006833: water transport1.86E-05
11GO:0010206: photosystem II repair6.09E-05
12GO:0080170: hydrogen peroxide transmembrane transport8.79E-05
13GO:0010411: xyloglucan metabolic process3.38E-04
14GO:0031338: regulation of vesicle fusion5.29E-04
15GO:0000481: maturation of 5S rRNA5.29E-04
16GO:2000021: regulation of ion homeostasis5.29E-04
17GO:0051247: positive regulation of protein metabolic process5.29E-04
18GO:0034337: RNA folding5.29E-04
19GO:2000905: negative regulation of starch metabolic process5.29E-04
20GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway5.29E-04
21GO:0071588: hydrogen peroxide mediated signaling pathway5.29E-04
22GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.29E-04
23GO:0060627: regulation of vesicle-mediated transport5.29E-04
24GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process5.29E-04
25GO:0070509: calcium ion import5.29E-04
26GO:0007263: nitric oxide mediated signal transduction5.29E-04
27GO:0043266: regulation of potassium ion transport5.29E-04
28GO:0046520: sphingoid biosynthetic process5.29E-04
29GO:0071370: cellular response to gibberellin stimulus5.29E-04
30GO:0006824: cobalt ion transport5.29E-04
31GO:0006633: fatty acid biosynthetic process1.05E-03
32GO:0010270: photosystem II oxygen evolving complex assembly1.14E-03
33GO:0019388: galactose catabolic process1.14E-03
34GO:0010541: acropetal auxin transport1.14E-03
35GO:0034755: iron ion transmembrane transport1.14E-03
36GO:0006816: calcium ion transport1.61E-03
37GO:0009735: response to cytokinin1.83E-03
38GO:0045493: xylan catabolic process1.87E-03
39GO:0090630: activation of GTPase activity1.87E-03
40GO:2001295: malonyl-CoA biosynthetic process1.87E-03
41GO:0033591: response to L-ascorbic acid1.87E-03
42GO:1902448: positive regulation of shade avoidance1.87E-03
43GO:0048586: regulation of long-day photoperiodism, flowering1.87E-03
44GO:0006518: peptide metabolic process1.87E-03
45GO:1901562: response to paraquat1.87E-03
46GO:0010160: formation of animal organ boundary1.87E-03
47GO:0006006: glucose metabolic process2.10E-03
48GO:0015995: chlorophyll biosynthetic process2.22E-03
49GO:0010143: cutin biosynthetic process2.37E-03
50GO:0010207: photosystem II assembly2.37E-03
51GO:0051513: regulation of monopolar cell growth2.70E-03
52GO:0007231: osmosensory signaling pathway2.70E-03
53GO:0051639: actin filament network formation2.70E-03
54GO:0034059: response to anoxia2.70E-03
55GO:0009052: pentose-phosphate shunt, non-oxidative branch2.70E-03
56GO:0009650: UV protection2.70E-03
57GO:0010306: rhamnogalacturonan II biosynthetic process2.70E-03
58GO:0043481: anthocyanin accumulation in tissues in response to UV light2.70E-03
59GO:0010731: protein glutathionylation2.70E-03
60GO:0006424: glutamyl-tRNA aminoacylation2.70E-03
61GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.70E-03
62GO:1901332: negative regulation of lateral root development2.70E-03
63GO:0009590: detection of gravity2.70E-03
64GO:0010025: wax biosynthetic process2.96E-03
65GO:0007165: signal transduction3.53E-03
66GO:0007017: microtubule-based process3.63E-03
67GO:0051764: actin crosslink formation3.64E-03
68GO:2000306: positive regulation of photomorphogenesis3.64E-03
69GO:0006085: acetyl-CoA biosynthetic process3.64E-03
70GO:0006183: GTP biosynthetic process3.64E-03
71GO:0045727: positive regulation of translation3.64E-03
72GO:0030104: water homeostasis3.64E-03
73GO:0033500: carbohydrate homeostasis3.64E-03
74GO:0005975: carbohydrate metabolic process3.90E-03
75GO:0009107: lipoate biosynthetic process4.67E-03
76GO:0000304: response to singlet oxygen4.67E-03
77GO:0034052: positive regulation of plant-type hypersensitive response4.67E-03
78GO:0032543: mitochondrial translation4.67E-03
79GO:0015979: photosynthesis4.96E-03
80GO:0042546: cell wall biogenesis5.00E-03
81GO:0048443: stamen development5.20E-03
82GO:0009789: positive regulation of abscisic acid-activated signaling pathway5.64E-03
83GO:0006751: glutathione catabolic process5.79E-03
84GO:0042549: photosystem II stabilization5.79E-03
85GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.79E-03
86GO:0060918: auxin transport5.79E-03
87GO:1902456: regulation of stomatal opening5.79E-03
88GO:0010190: cytochrome b6f complex assembly5.79E-03
89GO:0006086: acetyl-CoA biosynthetic process from pyruvate5.79E-03
90GO:0006828: manganese ion transport5.79E-03
91GO:0048868: pollen tube development6.57E-03
92GO:0010019: chloroplast-nucleus signaling pathway6.99E-03
93GO:0009612: response to mechanical stimulus6.99E-03
94GO:2000033: regulation of seed dormancy process6.99E-03
95GO:0016042: lipid catabolic process7.40E-03
96GO:0019252: starch biosynthetic process7.59E-03
97GO:0071554: cell wall organization or biogenesis8.13E-03
98GO:0000302: response to reactive oxygen species8.13E-03
99GO:0030497: fatty acid elongation8.28E-03
100GO:0010196: nonphotochemical quenching8.28E-03
101GO:0009645: response to low light intensity stimulus8.28E-03
102GO:0006810: transport9.26E-03
103GO:0032508: DNA duplex unwinding9.64E-03
104GO:0045010: actin nucleation9.64E-03
105GO:0005978: glycogen biosynthetic process9.64E-03
106GO:0043068: positive regulation of programmed cell death9.64E-03
107GO:0071555: cell wall organization1.03E-02
108GO:0042254: ribosome biogenesis1.07E-02
109GO:0032544: plastid translation1.11E-02
110GO:0009932: cell tip growth1.11E-02
111GO:0006526: arginine biosynthetic process1.11E-02
112GO:0009742: brassinosteroid mediated signaling pathway1.18E-02
113GO:0009051: pentose-phosphate shunt, oxidative branch1.26E-02
114GO:0090305: nucleic acid phosphodiester bond hydrolysis1.26E-02
115GO:0005982: starch metabolic process1.42E-02
116GO:0009638: phototropism1.42E-02
117GO:0043069: negative regulation of programmed cell death1.58E-02
118GO:0010162: seed dormancy process1.58E-02
119GO:0009870: defense response signaling pathway, resistance gene-dependent1.58E-02
120GO:0010311: lateral root formation1.63E-02
121GO:0010218: response to far red light1.71E-02
122GO:0009407: toxin catabolic process1.71E-02
123GO:0010015: root morphogenesis1.75E-02
124GO:0000038: very long-chain fatty acid metabolic process1.75E-02
125GO:0009773: photosynthetic electron transport in photosystem I1.75E-02
126GO:0045454: cell redox homeostasis1.89E-02
127GO:0008361: regulation of cell size1.93E-02
128GO:0006790: sulfur compound metabolic process1.93E-02
129GO:0010152: pollen maturation1.93E-02
130GO:0016024: CDP-diacylglycerol biosynthetic process1.93E-02
131GO:0009409: response to cold1.95E-02
132GO:0009637: response to blue light1.97E-02
133GO:0009738: abscisic acid-activated signaling pathway1.98E-02
134GO:0034599: cellular response to oxidative stress2.05E-02
135GO:0009416: response to light stimulus2.10E-02
136GO:0030036: actin cytoskeleton organization2.12E-02
137GO:0009767: photosynthetic electron transport chain2.12E-02
138GO:0045490: pectin catabolic process2.19E-02
139GO:0010540: basipetal auxin transport2.31E-02
140GO:0006631: fatty acid metabolic process2.34E-02
141GO:0010030: positive regulation of seed germination2.50E-02
142GO:0070588: calcium ion transmembrane transport2.50E-02
143GO:0046854: phosphatidylinositol phosphorylation2.50E-02
144GO:0005985: sucrose metabolic process2.50E-02
145GO:0009640: photomorphogenesis2.54E-02
146GO:0009414: response to water deprivation2.59E-02
147GO:0007166: cell surface receptor signaling pathway2.60E-02
148GO:0009651: response to salt stress2.77E-02
149GO:0009636: response to toxic substance2.85E-02
150GO:0005992: trehalose biosynthetic process2.91E-02
151GO:0051017: actin filament bundle assembly2.91E-02
152GO:0008152: metabolic process2.97E-02
153GO:0016575: histone deacetylation3.12E-02
154GO:0009768: photosynthesis, light harvesting in photosystem I3.12E-02
155GO:0055085: transmembrane transport3.13E-02
156GO:0009664: plant-type cell wall organization3.19E-02
157GO:0042538: hyperosmotic salinity response3.19E-02
158GO:0048511: rhythmic process3.34E-02
159GO:0010431: seed maturation3.34E-02
160GO:0031408: oxylipin biosynthetic process3.34E-02
161GO:0031348: negative regulation of defense response3.56E-02
162GO:0009814: defense response, incompatible interaction3.56E-02
163GO:0035428: hexose transmembrane transport3.56E-02
164GO:0009411: response to UV3.79E-02
165GO:0006012: galactose metabolic process3.79E-02
166GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.79E-02
167GO:0009306: protein secretion4.02E-02
168GO:0006284: base-excision repair4.02E-02
169GO:0009734: auxin-activated signaling pathway4.24E-02
170GO:0009626: plant-type hypersensitive response4.30E-02
171GO:0042391: regulation of membrane potential4.50E-02
172GO:0000413: protein peptidyl-prolyl isomerization4.50E-02
173GO:0042631: cellular response to water deprivation4.50E-02
174GO:0042335: cuticle development4.50E-02
175GO:0080022: primary root development4.50E-02
176GO:0009723: response to ethylene4.52E-02
177GO:0009740: gibberellic acid mediated signaling pathway4.57E-02
178GO:0010305: leaf vascular tissue pattern formation4.75E-02
179GO:0010182: sugar mediated signaling pathway4.75E-02
180GO:0046323: glucose import4.75E-02
181GO:0009958: positive gravitropism4.75E-02
182GO:0006520: cellular amino acid metabolic process4.75E-02
183GO:0006508: proteolysis4.78E-02
184GO:0009624: response to nematode4.84E-02
185GO:0009737: response to abscisic acid4.86E-02
186GO:0042752: regulation of circadian rhythm4.99E-02
RankGO TermAdjusted P value
1GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
2GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
3GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
4GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
5GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
6GO:0038198: auxin receptor activity0.00E+00
7GO:0051721: protein phosphatase 2A binding0.00E+00
8GO:0043014: alpha-tubulin binding0.00E+00
9GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
10GO:0042903: tubulin deacetylase activity0.00E+00
11GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
12GO:0005528: FK506 binding7.90E-07
13GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.00E-05
14GO:0015250: water channel activity2.36E-05
15GO:0016851: magnesium chelatase activity8.79E-05
16GO:0019843: rRNA binding1.30E-04
17GO:0008200: ion channel inhibitor activity3.27E-04
18GO:0004130: cytochrome-c peroxidase activity3.27E-04
19GO:0005221: intracellular cyclic nucleotide activated cation channel activity5.29E-04
20GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity5.29E-04
21GO:0000170: sphingosine hydroxylase activity5.29E-04
22GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity5.29E-04
23GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.29E-04
24GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity5.29E-04
25GO:0080132: fatty acid alpha-hydroxylase activity5.29E-04
26GO:0030570: pectate lyase activity5.77E-04
27GO:0004033: aldo-keto reductase (NADP) activity6.96E-04
28GO:0016762: xyloglucan:xyloglucosyl transferase activity1.13E-03
29GO:0000822: inositol hexakisphosphate binding1.14E-03
30GO:0017118: lipoyltransferase activity1.14E-03
31GO:0016868: intramolecular transferase activity, phosphotransferases1.14E-03
32GO:0003839: gamma-glutamylcyclotransferase activity1.14E-03
33GO:0016415: octanoyltransferase activity1.14E-03
34GO:0003938: IMP dehydrogenase activity1.14E-03
35GO:0033201: alpha-1,4-glucan synthase activity1.14E-03
36GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.14E-03
37GO:0004614: phosphoglucomutase activity1.14E-03
38GO:0042284: sphingolipid delta-4 desaturase activity1.14E-03
39GO:0004802: transketolase activity1.14E-03
40GO:0030267: glyoxylate reductase (NADP) activity1.87E-03
41GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.87E-03
42GO:0004324: ferredoxin-NADP+ reductase activity1.87E-03
43GO:0070330: aromatase activity1.87E-03
44GO:0004373: glycogen (starch) synthase activity1.87E-03
45GO:0050734: hydroxycinnamoyltransferase activity1.87E-03
46GO:0004075: biotin carboxylase activity1.87E-03
47GO:0004751: ribose-5-phosphate isomerase activity1.87E-03
48GO:0045174: glutathione dehydrogenase (ascorbate) activity1.87E-03
49GO:0005262: calcium channel activity2.10E-03
50GO:0004565: beta-galactosidase activity2.10E-03
51GO:0016798: hydrolase activity, acting on glycosyl bonds2.22E-03
52GO:0008266: poly(U) RNA binding2.37E-03
53GO:0005096: GTPase activator activity2.70E-03
54GO:0003878: ATP citrate synthase activity2.70E-03
55GO:0048487: beta-tubulin binding2.70E-03
56GO:0016491: oxidoreductase activity2.71E-03
57GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.96E-03
58GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.96E-03
59GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.96E-03
60GO:0046556: alpha-L-arabinofuranosidase activity3.64E-03
61GO:0010011: auxin binding3.64E-03
62GO:0004345: glucose-6-phosphate dehydrogenase activity3.64E-03
63GO:0016836: hydro-lyase activity3.64E-03
64GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity3.64E-03
65GO:0004045: aminoacyl-tRNA hydrolase activity3.64E-03
66GO:0009011: starch synthase activity3.64E-03
67GO:0009044: xylan 1,4-beta-xylosidase activity3.64E-03
68GO:0016829: lyase activity3.68E-03
69GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.09E-03
70GO:0004364: glutathione transferase activity4.52E-03
71GO:0003989: acetyl-CoA carboxylase activity4.67E-03
72GO:0008725: DNA-3-methyladenine glycosylase activity4.67E-03
73GO:0009922: fatty acid elongase activity4.67E-03
74GO:0003959: NADPH dehydrogenase activity4.67E-03
75GO:0018685: alkane 1-monooxygenase activity4.67E-03
76GO:0017137: Rab GTPase binding4.67E-03
77GO:0052689: carboxylic ester hydrolase activity4.69E-03
78GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.79E-03
79GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.79E-03
80GO:0004629: phospholipase C activity5.79E-03
81GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.79E-03
82GO:0016688: L-ascorbate peroxidase activity5.79E-03
83GO:0004871: signal transducer activity5.85E-03
84GO:0005242: inward rectifier potassium channel activity6.99E-03
85GO:0051920: peroxiredoxin activity6.99E-03
86GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.99E-03
87GO:0004017: adenylate kinase activity6.99E-03
88GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.99E-03
89GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.99E-03
90GO:0004435: phosphatidylinositol phospholipase C activity6.99E-03
91GO:0005261: cation channel activity6.99E-03
92GO:0009927: histidine phosphotransfer kinase activity6.99E-03
93GO:0043295: glutathione binding8.28E-03
94GO:0004564: beta-fructofuranosidase activity9.64E-03
95GO:0016209: antioxidant activity9.64E-03
96GO:0004034: aldose 1-epimerase activity9.64E-03
97GO:0005200: structural constituent of cytoskeleton1.05E-02
98GO:0016788: hydrolase activity, acting on ester bonds1.07E-02
99GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.11E-02
100GO:0016413: O-acetyltransferase activity1.12E-02
101GO:0005384: manganese ion transmembrane transporter activity1.42E-02
102GO:0004575: sucrose alpha-glucosidase activity1.42E-02
103GO:0005381: iron ion transmembrane transporter activity1.42E-02
104GO:0008236: serine-type peptidase activity1.47E-02
105GO:0004805: trehalose-phosphatase activity1.58E-02
106GO:0015020: glucuronosyltransferase activity1.58E-02
107GO:0047372: acylglycerol lipase activity1.75E-02
108GO:0003735: structural constituent of ribosome1.86E-02
109GO:0008378: galactosyltransferase activity1.93E-02
110GO:0003993: acid phosphatase activity2.05E-02
111GO:0015095: magnesium ion transmembrane transporter activity2.12E-02
112GO:0031072: heat shock protein binding2.12E-02
113GO:0004022: alcohol dehydrogenase (NAD) activity2.12E-02
114GO:0010329: auxin efflux transmembrane transporter activity2.12E-02
115GO:0030552: cAMP binding2.50E-02
116GO:0030553: cGMP binding2.50E-02
117GO:0031409: pigment binding2.70E-02
118GO:0051537: 2 iron, 2 sulfur cluster binding2.75E-02
119GO:0004407: histone deacetylase activity2.91E-02
120GO:0005216: ion channel activity3.12E-02
121GO:0003756: protein disulfide isomerase activity4.02E-02
122GO:0045735: nutrient reservoir activity4.04E-02
123GO:0004650: polygalacturonase activity4.43E-02
124GO:0030551: cyclic nucleotide binding4.50E-02
125GO:0016853: isomerase activity4.99E-02
126GO:0005355: glucose transmembrane transporter activity4.99E-02
127GO:0050662: coenzyme binding4.99E-02
128GO:0016746: transferase activity, transferring acyl groups4.99E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0009507: chloroplast4.25E-25
3GO:0009570: chloroplast stroma1.07E-18
4GO:0009534: chloroplast thylakoid2.33E-17
5GO:0009535: chloroplast thylakoid membrane5.38E-17
6GO:0009543: chloroplast thylakoid lumen3.76E-14
7GO:0009941: chloroplast envelope3.27E-12
8GO:0031977: thylakoid lumen1.35E-09
9GO:0009579: thylakoid5.26E-08
10GO:0009505: plant-type cell wall7.84E-07
11GO:0048046: apoplast1.30E-06
12GO:0005618: cell wall3.50E-05
13GO:0010007: magnesium chelatase complex4.12E-05
14GO:0010287: plastoglobule1.14E-04
15GO:0005576: extracellular region3.99E-04
16GO:0016020: membrane4.70E-04
17GO:0009344: nitrite reductase complex [NAD(P)H]5.29E-04
18GO:0043674: columella5.29E-04
19GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex5.29E-04
20GO:0009533: chloroplast stromal thylakoid5.59E-04
21GO:0045298: tubulin complex1.01E-03
22GO:0031969: chloroplast membrane1.04E-03
23GO:0005887: integral component of plasma membrane1.23E-03
24GO:0030095: chloroplast photosystem II2.37E-03
25GO:0009531: secondary cell wall2.70E-03
26GO:0005775: vacuolar lumen2.70E-03
27GO:0032432: actin filament bundle2.70E-03
28GO:0009346: citrate lyase complex2.70E-03
29GO:0009654: photosystem II oxygen evolving complex3.63E-03
30GO:0005886: plasma membrane4.53E-03
31GO:0031209: SCAR complex5.79E-03
32GO:0019898: extrinsic component of membrane7.59E-03
33GO:0042807: central vacuole8.28E-03
34GO:0009501: amyloplast9.64E-03
35GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.26E-02
36GO:0000151: ubiquitin ligase complex1.55E-02
37GO:0031225: anchored component of membrane1.65E-02
38GO:0005884: actin filament1.75E-02
39GO:0000311: plastid large ribosomal subunit1.93E-02
40GO:0032040: small-subunit processome1.93E-02
41GO:0030076: light-harvesting complex2.50E-02
42GO:0043234: protein complex2.70E-02
43GO:0005840: ribosome2.95E-02
44GO:0046658: anchored component of plasma membrane3.12E-02
45GO:0042651: thylakoid membrane3.12E-02
46GO:0005773: vacuole4.04E-02
47GO:0005874: microtubule4.72E-02
48GO:0009522: photosystem I4.99E-02
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Gene type



Gene DE type