Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G08550

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
2GO:0061635: regulation of protein complex stability0.00E+00
3GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
4GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
5GO:0090627: plant epidermal cell differentiation0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
8GO:0006000: fructose metabolic process5.46E-08
9GO:0009773: photosynthetic electron transport in photosystem I1.50E-06
10GO:0006094: gluconeogenesis2.82E-06
11GO:0030388: fructose 1,6-bisphosphate metabolic process6.25E-06
12GO:0006002: fructose 6-phosphate metabolic process1.94E-05
13GO:0010206: photosystem II repair2.67E-05
14GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.81E-05
15GO:0005983: starch catabolic process7.26E-05
16GO:0015969: guanosine tetraphosphate metabolic process3.73E-04
17GO:0019646: aerobic electron transport chain3.73E-04
18GO:0000476: maturation of 4.5S rRNA3.73E-04
19GO:0000967: rRNA 5'-end processing3.73E-04
20GO:0015808: L-alanine transport3.73E-04
21GO:0043266: regulation of potassium ion transport3.73E-04
22GO:0010480: microsporocyte differentiation3.73E-04
23GO:0031338: regulation of vesicle fusion3.73E-04
24GO:0000481: maturation of 5S rRNA3.73E-04
25GO:2000021: regulation of ion homeostasis3.73E-04
26GO:0043609: regulation of carbon utilization3.73E-04
27GO:0034337: RNA folding3.73E-04
28GO:0015979: photosynthesis4.70E-04
29GO:0071482: cellular response to light stimulus5.11E-04
30GO:0048507: meristem development6.13E-04
31GO:0055129: L-proline biosynthetic process8.10E-04
32GO:1900871: chloroplast mRNA modification8.10E-04
33GO:0042325: regulation of phosphorylation8.10E-04
34GO:0098712: L-glutamate import across plasma membrane8.10E-04
35GO:0010270: photosystem II oxygen evolving complex assembly8.10E-04
36GO:0015804: neutral amino acid transport8.10E-04
37GO:0034470: ncRNA processing8.10E-04
38GO:0008152: metabolic process9.57E-04
39GO:0006816: calcium ion transport9.70E-04
40GO:0015995: chlorophyll biosynthetic process1.15E-03
41GO:0005986: sucrose biosynthetic process1.25E-03
42GO:0006518: peptide metabolic process1.31E-03
43GO:0071230: cellular response to amino acid stimulus1.31E-03
44GO:0090630: activation of GTPase activity1.31E-03
45GO:2001295: malonyl-CoA biosynthetic process1.31E-03
46GO:0051639: actin filament network formation1.89E-03
47GO:0080170: hydrogen peroxide transmembrane transport1.89E-03
48GO:0009226: nucleotide-sugar biosynthetic process1.89E-03
49GO:1901332: negative regulation of lateral root development1.89E-03
50GO:0046836: glycolipid transport1.89E-03
51GO:0061077: chaperone-mediated protein folding2.37E-03
52GO:0007623: circadian rhythm2.38E-03
53GO:0051764: actin crosslink formation2.54E-03
54GO:0045727: positive regulation of translation2.54E-03
55GO:0015994: chlorophyll metabolic process2.54E-03
56GO:0010438: cellular response to sulfur starvation3.25E-03
57GO:0006465: signal peptide processing3.25E-03
58GO:0016120: carotene biosynthetic process3.25E-03
59GO:0006461: protein complex assembly3.25E-03
60GO:0006364: rRNA processing3.56E-03
61GO:0000470: maturation of LSU-rRNA4.02E-03
62GO:0009913: epidermal cell differentiation4.02E-03
63GO:0006828: manganese ion transport4.02E-03
64GO:0000741: karyogamy4.02E-03
65GO:0009759: indole glucosinolate biosynthetic process4.02E-03
66GO:0006561: proline biosynthetic process4.02E-03
67GO:0006751: glutathione catabolic process4.02E-03
68GO:0042549: photosystem II stabilization4.02E-03
69GO:0010256: endomembrane system organization4.02E-03
70GO:0042372: phylloquinone biosynthetic process4.85E-03
71GO:0009942: longitudinal axis specification4.85E-03
72GO:0009772: photosynthetic electron transport in photosystem II5.73E-03
73GO:0043090: amino acid import5.73E-03
74GO:0048437: floral organ development5.73E-03
75GO:0010196: nonphotochemical quenching5.73E-03
76GO:0009645: response to low light intensity stimulus5.73E-03
77GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway5.73E-03
78GO:0032508: DNA duplex unwinding6.65E-03
79GO:0010492: maintenance of shoot apical meristem identity6.65E-03
80GO:0009735: response to cytokinin7.20E-03
81GO:0006810: transport7.51E-03
82GO:0009657: plastid organization7.64E-03
83GO:0032544: plastid translation7.64E-03
84GO:0009932: cell tip growth7.64E-03
85GO:0005975: carbohydrate metabolic process8.06E-03
86GO:0045454: cell redox homeostasis8.48E-03
87GO:0006098: pentose-phosphate shunt8.66E-03
88GO:0090305: nucleic acid phosphodiester bond hydrolysis8.66E-03
89GO:0000373: Group II intron splicing8.66E-03
90GO:0006779: porphyrin-containing compound biosynthetic process9.74E-03
91GO:1900865: chloroplast RNA modification9.74E-03
92GO:0005982: starch metabolic process9.74E-03
93GO:0006782: protoporphyrinogen IX biosynthetic process1.09E-02
94GO:0006535: cysteine biosynthetic process from serine1.09E-02
95GO:0032259: methylation1.09E-02
96GO:0045036: protein targeting to chloroplast1.09E-02
97GO:0009698: phenylpropanoid metabolic process1.20E-02
98GO:1903507: negative regulation of nucleic acid-templated transcription1.20E-02
99GO:0009750: response to fructose1.20E-02
100GO:0048229: gametophyte development1.20E-02
101GO:0002213: defense response to insect1.33E-02
102GO:0018107: peptidyl-threonine phosphorylation1.45E-02
103GO:0009718: anthocyanin-containing compound biosynthetic process1.45E-02
104GO:0010075: regulation of meristem growth1.45E-02
105GO:0009767: photosynthetic electron transport chain1.45E-02
106GO:0010207: photosystem II assembly1.58E-02
107GO:0019253: reductive pentose-phosphate cycle1.58E-02
108GO:0009934: regulation of meristem structural organization1.58E-02
109GO:0005985: sucrose metabolic process1.71E-02
110GO:0010053: root epidermal cell differentiation1.71E-02
111GO:0009409: response to cold1.76E-02
112GO:0000162: tryptophan biosynthetic process1.85E-02
113GO:0034976: response to endoplasmic reticulum stress1.85E-02
114GO:0006833: water transport1.85E-02
115GO:0042538: hyperosmotic salinity response1.87E-02
116GO:0051017: actin filament bundle assembly1.99E-02
117GO:0006289: nucleotide-excision repair1.99E-02
118GO:0019344: cysteine biosynthetic process1.99E-02
119GO:0016575: histone deacetylation2.14E-02
120GO:0006874: cellular calcium ion homeostasis2.14E-02
121GO:0009768: photosynthesis, light harvesting in photosystem I2.14E-02
122GO:0006096: glycolytic process2.38E-02
123GO:0035428: hexose transmembrane transport2.44E-02
124GO:2000022: regulation of jasmonic acid mediated signaling pathway2.44E-02
125GO:0080092: regulation of pollen tube growth2.44E-02
126GO:0009416: response to light stimulus2.75E-02
127GO:0034220: ion transmembrane transport3.08E-02
128GO:0010051: xylem and phloem pattern formation3.08E-02
129GO:0048653: anther development3.08E-02
130GO:0010305: leaf vascular tissue pattern formation3.25E-02
131GO:0006662: glycerol ether metabolic process3.25E-02
132GO:0010197: polar nucleus fusion3.25E-02
133GO:0046323: glucose import3.25E-02
134GO:0009791: post-embryonic development3.60E-02
135GO:0048825: cotyledon development3.60E-02
136GO:0019252: starch biosynthetic process3.60E-02
137GO:0080156: mitochondrial mRNA modification3.78E-02
138GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.78E-02
139GO:0016032: viral process3.96E-02
140GO:0009630: gravitropism3.96E-02
141GO:0030163: protein catabolic process4.14E-02
142GO:1901657: glycosyl compound metabolic process4.14E-02
143GO:0006629: lipid metabolic process4.15E-02
144GO:0006633: fatty acid biosynthetic process4.49E-02
145GO:0071805: potassium ion transmembrane transport4.52E-02
146GO:0001666: response to hypoxia4.91E-02
147GO:0010027: thylakoid membrane organization4.91E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
3GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
4GO:0051721: protein phosphatase 2A binding0.00E+00
5GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
6GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
7GO:0042903: tubulin deacetylase activity0.00E+00
8GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
9GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
10GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
11GO:0043014: alpha-tubulin binding0.00E+00
12GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
13GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
14GO:0005528: FK506 binding1.93E-07
15GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.25E-06
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.97E-05
17GO:0051861: glycolipid binding8.50E-05
18GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor8.50E-05
19GO:0004332: fructose-bisphosphate aldolase activity1.90E-04
20GO:2001070: starch binding1.90E-04
21GO:0015194: L-serine transmembrane transporter activity3.73E-04
22GO:0004349: glutamate 5-kinase activity3.73E-04
23GO:0008066: glutamate receptor activity3.73E-04
24GO:0050308: sugar-phosphatase activity3.73E-04
25GO:0004350: glutamate-5-semialdehyde dehydrogenase activity3.73E-04
26GO:0004856: xylulokinase activity3.73E-04
27GO:0003867: 4-aminobutyrate transaminase activity3.73E-04
28GO:0019203: carbohydrate phosphatase activity3.73E-04
29GO:0030941: chloroplast targeting sequence binding3.73E-04
30GO:0050139: nicotinate-N-glucosyltransferase activity3.73E-04
31GO:0033201: alpha-1,4-glucan synthase activity8.10E-04
32GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity8.10E-04
33GO:0008728: GTP diphosphokinase activity8.10E-04
34GO:0015180: L-alanine transmembrane transporter activity8.10E-04
35GO:0050017: L-3-cyanoalanine synthase activity8.10E-04
36GO:0047746: chlorophyllase activity8.10E-04
37GO:0016868: intramolecular transferase activity, phosphotransferases8.10E-04
38GO:0003839: gamma-glutamylcyclotransferase activity8.10E-04
39GO:0005094: Rho GDP-dissociation inhibitor activity8.10E-04
40GO:0004565: beta-galactosidase activity1.25E-03
41GO:0004373: glycogen (starch) synthase activity1.31E-03
42GO:0004148: dihydrolipoyl dehydrogenase activity1.31E-03
43GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.31E-03
44GO:0015193: L-proline transmembrane transporter activity1.31E-03
45GO:0004075: biotin carboxylase activity1.31E-03
46GO:0030267: glyoxylate reductase (NADP) activity1.31E-03
47GO:0005096: GTPase activator activity1.39E-03
48GO:0015186: L-glutamine transmembrane transporter activity1.89E-03
49GO:0019201: nucleotide kinase activity1.89E-03
50GO:0015175: neutral amino acid transmembrane transporter activity1.89E-03
51GO:0048487: beta-tubulin binding1.89E-03
52GO:0017089: glycolipid transporter activity1.89E-03
53GO:0005313: L-glutamate transmembrane transporter activity2.54E-03
54GO:0070628: proteasome binding2.54E-03
55GO:0009011: starch synthase activity2.54E-03
56GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.54E-03
57GO:0003756: protein disulfide isomerase activity3.07E-03
58GO:0008374: O-acyltransferase activity3.25E-03
59GO:0016773: phosphotransferase activity, alcohol group as acceptor3.25E-03
60GO:0017137: Rab GTPase binding3.25E-03
61GO:0003989: acetyl-CoA carboxylase activity3.25E-03
62GO:0031593: polyubiquitin binding4.02E-03
63GO:0004556: alpha-amylase activity4.02E-03
64GO:0042578: phosphoric ester hydrolase activity4.02E-03
65GO:0048038: quinone binding4.79E-03
66GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.85E-03
67GO:0004017: adenylate kinase activity4.85E-03
68GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.85E-03
69GO:0004124: cysteine synthase activity4.85E-03
70GO:0016787: hydrolase activity6.45E-03
71GO:0004033: aldo-keto reductase (NADP) activity6.65E-03
72GO:0043022: ribosome binding6.65E-03
73GO:0004564: beta-fructofuranosidase activity6.65E-03
74GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.64E-03
75GO:0008236: serine-type peptidase activity8.62E-03
76GO:0008138: protein tyrosine/serine/threonine phosphatase activity8.66E-03
77GO:0004575: sucrose alpha-glucosidase activity9.74E-03
78GO:0005384: manganese ion transmembrane transporter activity9.74E-03
79GO:0004222: metalloendopeptidase activity1.00E-02
80GO:0005089: Rho guanyl-nucleotide exchange factor activity1.20E-02
81GO:0044183: protein binding involved in protein folding1.20E-02
82GO:0008081: phosphoric diester hydrolase activity1.45E-02
83GO:0004022: alcohol dehydrogenase (NAD) activity1.45E-02
84GO:0015095: magnesium ion transmembrane transporter activity1.45E-02
85GO:0031072: heat shock protein binding1.45E-02
86GO:0005262: calcium channel activity1.45E-02
87GO:0019888: protein phosphatase regulator activity1.45E-02
88GO:0004185: serine-type carboxypeptidase activity1.49E-02
89GO:0016301: kinase activity1.55E-02
90GO:0008266: poly(U) RNA binding1.58E-02
91GO:0016491: oxidoreductase activity1.67E-02
92GO:0015293: symporter activity1.68E-02
93GO:0005217: intracellular ligand-gated ion channel activity1.71E-02
94GO:0004970: ionotropic glutamate receptor activity1.71E-02
95GO:0031409: pigment binding1.85E-02
96GO:0008168: methyltransferase activity1.86E-02
97GO:0004407: histone deacetylase activity1.99E-02
98GO:0043130: ubiquitin binding1.99E-02
99GO:0003714: transcription corepressor activity1.99E-02
100GO:0003954: NADH dehydrogenase activity1.99E-02
101GO:0015079: potassium ion transmembrane transporter activity2.14E-02
102GO:0015171: amino acid transmembrane transporter activity2.23E-02
103GO:0004707: MAP kinase activity2.29E-02
104GO:0004176: ATP-dependent peptidase activity2.29E-02
105GO:0033612: receptor serine/threonine kinase binding2.29E-02
106GO:0005509: calcium ion binding2.46E-02
107GO:0047134: protein-disulfide reductase activity2.92E-02
108GO:0005355: glucose transmembrane transporter activity3.42E-02
109GO:0050662: coenzyme binding3.42E-02
110GO:0004791: thioredoxin-disulfide reductase activity3.42E-02
111GO:0019843: rRNA binding3.59E-02
112GO:0004518: nuclease activity3.96E-02
113GO:0004252: serine-type endopeptidase activity3.98E-02
114GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.14E-02
115GO:0051015: actin filament binding4.14E-02
116GO:0003684: damaged DNA binding4.33E-02
117GO:0008483: transaminase activity4.52E-02
118GO:0015250: water channel activity4.91E-02
RankGO TermAdjusted P value
1GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0009507: chloroplast1.08E-41
4GO:0009534: chloroplast thylakoid4.00E-25
5GO:0009535: chloroplast thylakoid membrane6.92E-18
6GO:0009570: chloroplast stroma6.27E-16
7GO:0009941: chloroplast envelope1.85E-11
8GO:0009543: chloroplast thylakoid lumen2.28E-11
9GO:0009579: thylakoid1.93E-08
10GO:0010287: plastoglobule2.52E-06
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.67E-05
12GO:0009533: chloroplast stromal thylakoid3.33E-04
13GO:0031977: thylakoid lumen3.34E-04
14GO:0009782: photosystem I antenna complex3.73E-04
15GO:0009344: nitrite reductase complex [NAD(P)H]3.73E-04
16GO:0031304: intrinsic component of mitochondrial inner membrane8.10E-04
17GO:0009508: plastid chromosome1.25E-03
18GO:0030095: chloroplast photosystem II1.41E-03
19GO:0031969: chloroplast membrane1.55E-03
20GO:0032432: actin filament bundle1.89E-03
21GO:0009531: secondary cell wall1.89E-03
22GO:0009654: photosystem II oxygen evolving complex2.16E-03
23GO:0042651: thylakoid membrane2.16E-03
24GO:0019898: extrinsic component of membrane4.48E-03
25GO:0031359: integral component of chloroplast outer membrane5.73E-03
26GO:0009295: nucleoid6.18E-03
27GO:0009501: amyloplast6.65E-03
28GO:0042644: chloroplast nucleoid8.66E-03
29GO:0005773: vacuole1.04E-02
30GO:0000159: protein phosphatase type 2A complex1.20E-02
31GO:0005884: actin filament1.20E-02
32GO:0032040: small-subunit processome1.33E-02
33GO:0009505: plant-type cell wall1.52E-02
34GO:0030076: light-harvesting complex1.71E-02
35GO:0048046: apoplast2.17E-02
36GO:0009523: photosystem II3.60E-02
37GO:0010319: stromule4.52E-02
38GO:0030529: intracellular ribonucleoprotein complex4.91E-02
39GO:0009705: plant-type vacuole membrane4.93E-02
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Gene type



Gene DE type