Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G08390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
2GO:0006223: uracil salvage0.00E+00
3GO:0060416: response to growth hormone0.00E+00
4GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
5GO:0097164: ammonium ion metabolic process0.00E+00
6GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
7GO:0006633: fatty acid biosynthetic process3.26E-06
8GO:0032544: plastid translation1.38E-05
9GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway3.24E-04
10GO:0060627: regulation of vesicle-mediated transport3.24E-04
11GO:1903409: reactive oxygen species biosynthetic process3.24E-04
12GO:0010442: guard cell morphogenesis3.24E-04
13GO:0080148: negative regulation of response to water deprivation7.07E-04
14GO:0006529: asparagine biosynthetic process7.07E-04
15GO:0010289: homogalacturonan biosynthetic process7.07E-04
16GO:2000123: positive regulation of stomatal complex development7.07E-04
17GO:0052541: plant-type cell wall cellulose metabolic process7.07E-04
18GO:0010115: regulation of abscisic acid biosynthetic process7.07E-04
19GO:0070981: L-asparagine biosynthetic process7.07E-04
20GO:0045717: negative regulation of fatty acid biosynthetic process7.07E-04
21GO:0050826: response to freezing1.03E-03
22GO:0051604: protein maturation1.15E-03
23GO:1902448: positive regulation of shade avoidance1.15E-03
24GO:0046168: glycerol-3-phosphate catabolic process1.15E-03
25GO:0006518: peptide metabolic process1.15E-03
26GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.15E-03
27GO:0010207: photosystem II assembly1.16E-03
28GO:0016051: carbohydrate biosynthetic process1.35E-03
29GO:0050482: arachidonic acid secretion1.65E-03
30GO:0055070: copper ion homeostasis1.65E-03
31GO:0009413: response to flooding1.65E-03
32GO:0006072: glycerol-3-phosphate metabolic process1.65E-03
33GO:0006424: glutamyl-tRNA aminoacylation1.65E-03
34GO:0046739: transport of virus in multicellular host1.65E-03
35GO:0016998: cell wall macromolecule catabolic process1.93E-03
36GO:0015976: carbon utilization2.21E-03
37GO:0006183: GTP biosynthetic process2.21E-03
38GO:2000038: regulation of stomatal complex development2.21E-03
39GO:0000919: cell plate assembly2.21E-03
40GO:0006021: inositol biosynthetic process2.21E-03
41GO:0044206: UMP salvage2.21E-03
42GO:0006749: glutathione metabolic process2.21E-03
43GO:0042538: hyperosmotic salinity response2.49E-03
44GO:0006564: L-serine biosynthetic process2.82E-03
45GO:0045038: protein import into chloroplast thylakoid membrane2.82E-03
46GO:0035434: copper ion transmembrane transport2.82E-03
47GO:0016123: xanthophyll biosynthetic process2.82E-03
48GO:0010375: stomatal complex patterning2.82E-03
49GO:0000304: response to singlet oxygen2.82E-03
50GO:0032543: mitochondrial translation2.82E-03
51GO:0043097: pyrimidine nucleoside salvage2.82E-03
52GO:0000271: polysaccharide biosynthetic process2.93E-03
53GO:0042335: cuticle development2.93E-03
54GO:0042254: ribosome biogenesis3.48E-03
55GO:0006561: proline biosynthetic process3.49E-03
56GO:0010405: arabinogalactan protein metabolic process3.49E-03
57GO:0006751: glutathione catabolic process3.49E-03
58GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.49E-03
59GO:0016554: cytidine to uridine editing3.49E-03
60GO:0006796: phosphate-containing compound metabolic process3.49E-03
61GO:0010190: cytochrome b6f complex assembly3.49E-03
62GO:0006206: pyrimidine nucleobase metabolic process3.49E-03
63GO:0018258: protein O-linked glycosylation via hydroxyproline3.49E-03
64GO:0009117: nucleotide metabolic process3.49E-03
65GO:0046855: inositol phosphate dephosphorylation3.49E-03
66GO:0071554: cell wall organization or biogenesis3.89E-03
67GO:0032502: developmental process4.16E-03
68GO:0010583: response to cyclopentenone4.16E-03
69GO:0030488: tRNA methylation4.20E-03
70GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.20E-03
71GO:0042372: phylloquinone biosynthetic process4.20E-03
72GO:0048280: vesicle fusion with Golgi apparatus4.20E-03
73GO:0006955: immune response4.95E-03
74GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.95E-03
75GO:0071669: plant-type cell wall organization or biogenesis4.95E-03
76GO:0010444: guard mother cell differentiation4.95E-03
77GO:0007267: cell-cell signaling5.01E-03
78GO:0010027: thylakoid membrane organization5.63E-03
79GO:0010078: maintenance of root meristem identity5.76E-03
80GO:0006875: cellular metal ion homeostasis5.76E-03
81GO:0009704: de-etiolation5.76E-03
82GO:0006644: phospholipid metabolic process5.76E-03
83GO:0048564: photosystem I assembly5.76E-03
84GO:0045292: mRNA cis splicing, via spliceosome5.76E-03
85GO:0009690: cytokinin metabolic process5.76E-03
86GO:0045454: cell redox homeostasis6.16E-03
87GO:0071555: cell wall organization6.51E-03
88GO:0043562: cellular response to nitrogen levels6.60E-03
89GO:0009932: cell tip growth6.60E-03
90GO:0010497: plasmodesmata-mediated intercellular transport6.60E-03
91GO:0015995: chlorophyll biosynthetic process6.63E-03
92GO:0000373: Group II intron splicing7.48E-03
93GO:0009407: toxin catabolic process8.11E-03
94GO:0016042: lipid catabolic process8.12E-03
95GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process8.41E-03
96GO:1900865: chloroplast RNA modification8.41E-03
97GO:0048527: lateral root development8.51E-03
98GO:0009688: abscisic acid biosynthetic process9.37E-03
99GO:0043069: negative regulation of programmed cell death9.37E-03
100GO:0006896: Golgi to vacuole transport9.37E-03
101GO:0006535: cysteine biosynthetic process from serine9.37E-03
102GO:0009750: response to fructose1.04E-02
103GO:0018119: peptidyl-cysteine S-nitrosylation1.04E-02
104GO:0030148: sphingolipid biosynthetic process1.04E-02
105GO:0009684: indoleacetic acid biosynthetic process1.04E-02
106GO:0000038: very long-chain fatty acid metabolic process1.04E-02
107GO:0009073: aromatic amino acid family biosynthetic process1.04E-02
108GO:0006415: translational termination1.04E-02
109GO:0030001: metal ion transport1.06E-02
110GO:0006631: fatty acid metabolic process1.11E-02
111GO:0006790: sulfur compound metabolic process1.14E-02
112GO:0045037: protein import into chloroplast stroma1.14E-02
113GO:0009767: photosynthetic electron transport chain1.25E-02
114GO:0010588: cotyledon vascular tissue pattern formation1.25E-02
115GO:0042546: cell wall biogenesis1.26E-02
116GO:0006412: translation1.32E-02
117GO:0048467: gynoecium development1.36E-02
118GO:0006541: glutamine metabolic process1.36E-02
119GO:0009636: response to toxic substance1.36E-02
120GO:0007034: vacuolar transport1.36E-02
121GO:0046854: phosphatidylinositol phosphorylation1.48E-02
122GO:0019853: L-ascorbic acid biosynthetic process1.48E-02
123GO:0006071: glycerol metabolic process1.60E-02
124GO:0006833: water transport1.60E-02
125GO:0007049: cell cycle1.72E-02
126GO:0019344: cysteine biosynthetic process1.72E-02
127GO:0009116: nucleoside metabolic process1.72E-02
128GO:0010026: trichome differentiation1.84E-02
129GO:0031408: oxylipin biosynthetic process1.97E-02
130GO:0048278: vesicle docking1.97E-02
131GO:0048367: shoot system development1.99E-02
132GO:0016226: iron-sulfur cluster assembly2.10E-02
133GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.23E-02
134GO:0019722: calcium-mediated signaling2.37E-02
135GO:0016117: carotenoid biosynthetic process2.51E-02
136GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.51E-02
137GO:0070417: cellular response to cold2.51E-02
138GO:0042147: retrograde transport, endosome to Golgi2.51E-02
139GO:0080022: primary root development2.65E-02
140GO:0034220: ion transmembrane transport2.65E-02
141GO:0000413: protein peptidyl-prolyl isomerization2.65E-02
142GO:0010087: phloem or xylem histogenesis2.65E-02
143GO:0006869: lipid transport2.77E-02
144GO:0010182: sugar mediated signaling pathway2.80E-02
145GO:0009958: positive gravitropism2.80E-02
146GO:0045489: pectin biosynthetic process2.80E-02
147GO:0061025: membrane fusion2.95E-02
148GO:0009646: response to absence of light2.95E-02
149GO:0009851: auxin biosynthetic process3.10E-02
150GO:0006623: protein targeting to vacuole3.10E-02
151GO:0048825: cotyledon development3.10E-02
152GO:0006891: intra-Golgi vesicle-mediated transport3.25E-02
153GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.25E-02
154GO:0007264: small GTPase mediated signal transduction3.41E-02
155GO:0008152: metabolic process3.61E-02
156GO:0009828: plant-type cell wall loosening3.73E-02
157GO:0009567: double fertilization forming a zygote and endosperm3.73E-02
158GO:0040008: regulation of growth3.83E-02
159GO:0005975: carbohydrate metabolic process3.96E-02
160GO:0051607: defense response to virus4.06E-02
161GO:0000910: cytokinesis4.06E-02
162GO:0009451: RNA modification4.10E-02
163GO:0016126: sterol biosynthetic process4.23E-02
164GO:0042128: nitrate assimilation4.57E-02
165GO:0006906: vesicle fusion4.57E-02
166GO:0006888: ER to Golgi vesicle-mediated transport4.75E-02
167GO:0010411: xyloglucan metabolic process4.75E-02
168GO:0016311: dephosphorylation4.92E-02
RankGO TermAdjusted P value
1GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
2GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
3GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
4GO:0005048: signal sequence binding0.00E+00
5GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
6GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
7GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
8GO:0010301: xanthoxin dehydrogenase activity0.00E+00
9GO:0050613: delta14-sterol reductase activity0.00E+00
10GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
11GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity4.77E-06
12GO:0052689: carboxylic ester hydrolase activity4.67E-05
13GO:0005528: FK506 binding1.30E-04
14GO:0051920: peroxiredoxin activity2.07E-04
15GO:0051753: mannan synthase activity2.07E-04
16GO:0015088: copper uptake transmembrane transporter activity3.24E-04
17GO:0004328: formamidase activity3.24E-04
18GO:0010347: L-galactose-1-phosphate phosphatase activity3.24E-04
19GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.24E-04
20GO:0004560: alpha-L-fucosidase activity3.24E-04
21GO:0001530: lipopolysaccharide binding3.24E-04
22GO:0042834: peptidoglycan binding3.24E-04
23GO:0080132: fatty acid alpha-hydroxylase activity3.24E-04
24GO:0052631: sphingolipid delta-8 desaturase activity3.24E-04
25GO:0009374: biotin binding3.24E-04
26GO:0004071: aspartate-ammonia ligase activity3.24E-04
27GO:0016209: antioxidant activity3.40E-04
28GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.51E-04
29GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity7.07E-04
30GO:0003839: gamma-glutamylcyclotransferase activity7.07E-04
31GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity7.07E-04
32GO:0004617: phosphoglycerate dehydrogenase activity7.07E-04
33GO:0003938: IMP dehydrogenase activity7.07E-04
34GO:0052832: inositol monophosphate 3-phosphatase activity7.07E-04
35GO:0080097: L-tryptophan:pyruvate aminotransferase activity7.07E-04
36GO:0008934: inositol monophosphate 1-phosphatase activity7.07E-04
37GO:0052833: inositol monophosphate 4-phosphatase activity7.07E-04
38GO:0016788: hydrolase activity, acting on ester bonds7.63E-04
39GO:0016758: transferase activity, transferring hexosyl groups1.02E-03
40GO:0019843: rRNA binding1.06E-03
41GO:0030267: glyoxylate reductase (NADP) activity1.15E-03
42GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.15E-03
43GO:0016531: copper chaperone activity1.15E-03
44GO:0019829: cation-transporting ATPase activity1.15E-03
45GO:0005504: fatty acid binding1.15E-03
46GO:0004148: dihydrolipoyl dehydrogenase activity1.15E-03
47GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.44E-03
48GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.44E-03
49GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.44E-03
50GO:0051536: iron-sulfur cluster binding1.59E-03
51GO:0008097: 5S rRNA binding1.65E-03
52GO:0001872: (1->3)-beta-D-glucan binding1.65E-03
53GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.65E-03
54GO:0035529: NADH pyrophosphatase activity1.65E-03
55GO:0016149: translation release factor activity, codon specific1.65E-03
56GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.65E-03
57GO:0016851: magnesium chelatase activity1.65E-03
58GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.65E-03
59GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.11E-03
60GO:0004845: uracil phosphoribosyltransferase activity2.21E-03
61GO:0016836: hydro-lyase activity2.21E-03
62GO:0045430: chalcone isomerase activity2.21E-03
63GO:0052793: pectin acetylesterase activity2.21E-03
64GO:0046527: glucosyltransferase activity2.21E-03
65GO:0003989: acetyl-CoA carboxylase activity2.82E-03
66GO:0016846: carbon-sulfur lyase activity2.82E-03
67GO:0004623: phospholipase A2 activity2.82E-03
68GO:0004040: amidase activity2.82E-03
69GO:0003735: structural constituent of ribosome3.30E-03
70GO:0080030: methyl indole-3-acetate esterase activity3.49E-03
71GO:1990714: hydroxyproline O-galactosyltransferase activity3.49E-03
72GO:0016208: AMP binding3.49E-03
73GO:0016462: pyrophosphatase activity3.49E-03
74GO:0019901: protein kinase binding3.64E-03
75GO:0016491: oxidoreductase activity3.76E-03
76GO:0008289: lipid binding3.81E-03
77GO:0004124: cysteine synthase activity4.20E-03
78GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.20E-03
79GO:0004849: uridine kinase activity4.20E-03
80GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.20E-03
81GO:0043295: glutathione binding4.95E-03
82GO:0004427: inorganic diphosphatase activity4.95E-03
83GO:0016413: O-acetyltransferase activity5.32E-03
84GO:0016597: amino acid binding5.32E-03
85GO:0008312: 7S RNA binding5.76E-03
86GO:0004033: aldo-keto reductase (NADP) activity5.76E-03
87GO:0005375: copper ion transmembrane transporter activity6.60E-03
88GO:0003747: translation release factor activity7.48E-03
89GO:0008889: glycerophosphodiester phosphodiesterase activity7.48E-03
90GO:0005381: iron ion transmembrane transporter activity8.41E-03
91GO:0003924: GTPase activity8.48E-03
92GO:0015020: glucuronosyltransferase activity9.37E-03
93GO:0009055: electron carrier activity9.43E-03
94GO:0000149: SNARE binding1.02E-02
95GO:0008794: arsenate reductase (glutaredoxin) activity1.04E-02
96GO:0005507: copper ion binding1.08E-02
97GO:0008378: galactosyltransferase activity1.14E-02
98GO:0016757: transferase activity, transferring glycosyl groups1.16E-02
99GO:0004364: glutathione transferase activity1.16E-02
100GO:0005484: SNAP receptor activity1.21E-02
101GO:0004089: carbonate dehydratase activity1.25E-02
102GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.25E-02
103GO:0004022: alcohol dehydrogenase (NAD) activity1.25E-02
104GO:0005525: GTP binding1.38E-02
105GO:0051287: NAD binding1.46E-02
106GO:0008324: cation transmembrane transporter activity1.84E-02
107GO:0016760: cellulose synthase (UDP-forming) activity2.23E-02
108GO:0008514: organic anion transmembrane transporter activity2.37E-02
109GO:0003713: transcription coactivator activity2.80E-02
110GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.03E-02
111GO:0016762: xyloglucan:xyloglucosyl transferase activity3.25E-02
112GO:0004519: endonuclease activity3.55E-02
113GO:0000156: phosphorelay response regulator activity3.57E-02
114GO:0016722: oxidoreductase activity, oxidizing metal ions3.89E-02
115GO:0015250: water channel activity4.23E-02
116GO:0008194: UDP-glycosyltransferase activity4.48E-02
117GO:0008375: acetylglucosaminyltransferase activity4.57E-02
118GO:0016798: hydrolase activity, acting on glycosyl bonds4.75E-02
119GO:0030247: polysaccharide binding4.75E-02
120GO:0008236: serine-type peptidase activity4.92E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0009570: chloroplast stroma3.66E-18
4GO:0009507: chloroplast3.40E-14
5GO:0009941: chloroplast envelope2.56E-13
6GO:0046658: anchored component of plasma membrane2.06E-10
7GO:0031225: anchored component of membrane2.67E-08
8GO:0009543: chloroplast thylakoid lumen2.00E-05
9GO:0031977: thylakoid lumen2.14E-05
10GO:0009536: plastid3.18E-04
11GO:0080085: signal recognition particle, chloroplast targeting7.07E-04
12GO:0005840: ribosome7.14E-04
13GO:0009505: plant-type cell wall1.09E-03
14GO:0009317: acetyl-CoA carboxylase complex1.15E-03
15GO:0010007: magnesium chelatase complex1.15E-03
16GO:0009509: chromoplast1.15E-03
17GO:0000139: Golgi membrane1.31E-03
18GO:0009535: chloroplast thylakoid membrane1.56E-03
19GO:0009331: glycerol-3-phosphate dehydrogenase complex1.65E-03
20GO:0009526: plastid envelope2.21E-03
21GO:0031897: Tic complex2.21E-03
22GO:0009579: thylakoid2.31E-03
23GO:0009534: chloroplast thylakoid2.35E-03
24GO:0055035: plastid thylakoid membrane2.82E-03
25GO:0009504: cell plate3.64E-03
26GO:0016021: integral component of membrane4.13E-03
27GO:0000815: ESCRT III complex4.20E-03
28GO:0031969: chloroplast membrane4.69E-03
29GO:0005794: Golgi apparatus4.72E-03
30GO:0009533: chloroplast stromal thylakoid4.95E-03
31GO:0005576: extracellular region5.39E-03
32GO:0012507: ER to Golgi transport vesicle membrane5.76E-03
33GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.60E-03
34GO:0005886: plasma membrane1.03E-02
35GO:0031201: SNARE complex1.11E-02
36GO:0000311: plastid large ribosomal subunit1.14E-02
37GO:0030176: integral component of endoplasmic reticulum membrane1.48E-02
38GO:0009506: plasmodesma1.56E-02
39GO:0043234: protein complex1.60E-02
40GO:0005768: endosome1.65E-02
41GO:0031410: cytoplasmic vesicle2.10E-02
42GO:0048046: apoplast3.21E-02
43GO:0043231: intracellular membrane-bounded organelle3.61E-02
44GO:0005618: cell wall3.82E-02
45GO:0005778: peroxisomal membrane3.89E-02
46GO:0005802: trans-Golgi network4.02E-02
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Gene type



Gene DE type