co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G05340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042430: indole-containing compound metabolic process	0.00E+00
2	GO:0009617: response to bacterium	1.14E-05
3	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	9.50E-05
4	GO:0010421: hydrogen peroxide-mediated programmed cell death	9.50E-05
5	GO:0046244: salicylic acid catabolic process	9.50E-05
6	GO:0009270: response to humidity	9.50E-05
7	GO:0007064: mitotic sister chromatid cohesion	1.20E-04
8	GO:0042542: response to hydrogen peroxide	1.96E-04
9	GO:0044419: interspecies interaction between organisms	2.24E-04
10	GO:0015865: purine nucleotide transport	2.24E-04
11	GO:0019725: cellular homeostasis	2.24E-04
12	GO:0009863: salicylic acid mediated signaling pathway	3.00E-04
13	GO:0045793: positive regulation of cell size	3.73E-04
14	GO:0010186: positive regulation of cellular defense response	3.73E-04
15	GO:0009410: response to xenobiotic stimulus	3.73E-04
16	GO:0009626: plant-type hypersensitive response	4.18E-04
17	GO:0002239: response to oomycetes	5.37E-04
18	GO:0046902: regulation of mitochondrial membrane permeability	5.37E-04
19	GO:0010116: positive regulation of abscisic acid biosynthetic process	5.37E-04
20	GO:0032259: methylation	5.73E-04
21	GO:0080037: negative regulation of cytokinin-activated signaling pathway	7.14E-04
22	GO:0060548: negative regulation of cell death	7.14E-04
23	GO:0046345: abscisic acid catabolic process	7.14E-04
24	GO:0010193: response to ozone	7.29E-04
25	GO:0000302: response to reactive oxygen species	7.29E-04
26	GO:0030163: protein catabolic process	8.26E-04
27	GO:0010225: response to UV-C	9.02E-04
28	GO:0034052: positive regulation of plant-type hypersensitive response	9.02E-04
29	GO:0000304: response to singlet oxygen	9.02E-04
30	GO:0009697: salicylic acid biosynthetic process	9.02E-04
31	GO:2000762: regulation of phenylpropanoid metabolic process	9.02E-04
32	GO:0042742: defense response to bacterium	9.45E-04
33	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.10E-03
34	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.10E-03
35	GO:0010405: arabinogalactan protein metabolic process	1.10E-03
36	GO:0010256: endomembrane system organization	1.10E-03
37	GO:0006468: protein phosphorylation	1.24E-03
38	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.31E-03
39	GO:0042372: phylloquinone biosynthetic process	1.31E-03
40	GO:0009407: toxin catabolic process	1.47E-03
41	GO:1900056: negative regulation of leaf senescence	1.54E-03
42	GO:1902074: response to salt	1.54E-03
43	GO:0030162: regulation of proteolysis	1.78E-03
44	GO:0030091: protein repair	1.78E-03
45	GO:0009808: lignin metabolic process	2.03E-03
46	GO:0046685: response to arsenic-containing substance	2.29E-03
47	GO:0010112: regulation of systemic acquired resistance	2.29E-03
48	GO:0007338: single fertilization	2.29E-03
49	GO:0006511: ubiquitin-dependent protein catabolic process	2.30E-03
50	GO:0009636: response to toxic substance	2.42E-03
51	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.56E-03
52	GO:0008202: steroid metabolic process	2.56E-03
53	GO:0009688: abscisic acid biosynthetic process	2.85E-03
54	GO:0012501: programmed cell death	3.44E-03
55	GO:0002213: defense response to insect	3.44E-03
56	GO:0015706: nitrate transport	3.44E-03
57	GO:0009751: response to salicylic acid	3.50E-03
58	GO:0006807: nitrogen compound metabolic process	3.76E-03
59	GO:0002237: response to molecule of bacterial origin	4.08E-03
60	GO:0009266: response to temperature stimulus	4.08E-03
61	GO:0010167: response to nitrate	4.41E-03
62	GO:0070588: calcium ion transmembrane transport	4.41E-03
63	GO:0030150: protein import into mitochondrial matrix	5.10E-03
64	GO:0015031: protein transport	6.06E-03
65	GO:0009814: defense response, incompatible interaction	6.20E-03
66	GO:0030433: ubiquitin-dependent ERAD pathway	6.20E-03
67	GO:0031348: negative regulation of defense response	6.20E-03
68	GO:0071456: cellular response to hypoxia	6.20E-03
69	GO:0019748: secondary metabolic process	6.20E-03
70	GO:0009411: response to UV	6.58E-03
71	GO:0010584: pollen exine formation	6.98E-03
72	GO:0010150: leaf senescence	7.06E-03
73	GO:0010118: stomatal movement	7.79E-03
74	GO:0010468: regulation of gene expression	8.42E-03
75	GO:0009851: auxin biosynthetic process	9.06E-03
76	GO:0002229: defense response to oomycetes	9.51E-03
77	GO:0010252: auxin homeostasis	1.09E-02
78	GO:0009567: double fertilization forming a zygote and endosperm	1.09E-02
79	GO:0006970: response to osmotic stress	1.18E-02
80	GO:0009615: response to virus	1.23E-02
81	GO:0009816: defense response to bacterium, incompatible interaction	1.28E-02
82	GO:0007165: signal transduction	1.28E-02
83	GO:0009627: systemic acquired resistance	1.33E-02
84	GO:0042128: nitrate assimilation	1.33E-02
85	GO:0010200: response to chitin	1.40E-02
86	GO:0009817: defense response to fungus, incompatible interaction	1.49E-02
87	GO:0008219: cell death	1.49E-02
88	GO:0048527: lateral root development	1.65E-02
89	GO:0007568: aging	1.65E-02
90	GO:0006869: lipid transport	1.79E-02
91	GO:0006979: response to oxidative stress	1.82E-02
92	GO:0006839: mitochondrial transport	1.93E-02
93	GO:0009408: response to heat	2.01E-02
94	GO:0031347: regulation of defense response	2.41E-02
95	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.41E-02
96	GO:0009846: pollen germination	2.47E-02
97	GO:0009809: lignin biosynthetic process	2.60E-02
98	GO:0006486: protein glycosylation	2.60E-02
99	GO:0051603: proteolysis involved in cellular protein catabolic process	2.67E-02
100	GO:0009909: regulation of flower development	2.80E-02
101	GO:0009620: response to fungus	3.14E-02
102	GO:0018105: peptidyl-serine phosphorylation	3.42E-02
103	GO:0009738: abscisic acid-activated signaling pathway	3.45E-02
104	GO:0009058: biosynthetic process	4.07E-02
105	GO:0009845: seed germination	4.15E-02
106	GO:0006457: protein folding	4.59E-02
107	GO:0009737: response to abscisic acid	4.62E-02
108	GO:0040008: regulation of growth	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0008909: isochorismate synthase activity	9.50E-05
2	GO:0004674: protein serine/threonine kinase activity	1.02E-04
3	GO:0032934: sterol binding	2.24E-04
4	GO:0004298: threonine-type endopeptidase activity	3.65E-04
5	GO:0004031: aldehyde oxidase activity	7.14E-04
6	GO:0050302: indole-3-acetaldehyde oxidase activity	7.14E-04
7	GO:0010279: indole-3-acetic acid amido synthetase activity	7.14E-04
8	GO:0005509: calcium ion binding	8.23E-04
9	GO:0005496: steroid binding	9.02E-04
10	GO:0005471: ATP:ADP antiporter activity	9.02E-04
11	GO:0010294: abscisic acid glucosyltransferase activity	9.02E-04
12	GO:0016301: kinase activity	1.05E-03
13	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.10E-03
14	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.10E-03
15	GO:0036402: proteasome-activating ATPase activity	1.10E-03
16	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.10E-03
17	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.27E-03
18	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.31E-03
19	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	1.31E-03
20	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.54E-03
21	GO:0008320: protein transmembrane transporter activity	1.54E-03
22	GO:0008168: methyltransferase activity	1.58E-03
23	GO:0005524: ATP binding	1.78E-03
24	GO:0005544: calcium-dependent phospholipid binding	1.78E-03
25	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.78E-03
26	GO:0008142: oxysterol binding	2.03E-03
27	GO:0004364: glutathione transferase activity	2.07E-03
28	GO:0045309: protein phosphorylated amino acid binding	2.56E-03
29	GO:0015112: nitrate transmembrane transporter activity	2.56E-03
30	GO:0008171: O-methyltransferase activity	2.85E-03
31	GO:0019904: protein domain specific binding	3.14E-03
32	GO:0008378: galactosyltransferase activity	3.44E-03
33	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.74E-03
34	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.74E-03
35	GO:0005388: calcium-transporting ATPase activity	3.76E-03
36	GO:0015266: protein channel activity	3.76E-03
37	GO:0004022: alcohol dehydrogenase (NAD) activity	3.76E-03
38	GO:0017025: TBP-class protein binding	4.41E-03
39	GO:0016758: transferase activity, transferring hexosyl groups	4.99E-03
40	GO:0016887: ATPase activity	6.20E-03
41	GO:0008194: UDP-glycosyltransferase activity	7.90E-03
42	GO:0042802: identical protein binding	8.97E-03
43	GO:0004197: cysteine-type endopeptidase activity	9.96E-03
44	GO:0008237: metallopeptidase activity	1.14E-02
45	GO:0003682: chromatin binding	1.16E-02
46	GO:0051213: dioxygenase activity	1.23E-02
47	GO:0005516: calmodulin binding	1.24E-02
48	GO:0050660: flavin adenine dinucleotide binding	1.27E-02
49	GO:0008233: peptidase activity	1.33E-02
50	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.33E-02
51	GO:0030247: polysaccharide binding	1.38E-02
52	GO:0004683: calmodulin-dependent protein kinase activity	1.38E-02
53	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.49E-02
54	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.76E-02
55	GO:0000987: core promoter proximal region sequence-specific DNA binding	1.81E-02
56	GO:0009055: electron carrier activity	2.15E-02
57	GO:0051537: 2 iron, 2 sulfur cluster binding	2.23E-02
58	GO:0031625: ubiquitin protein ligase binding	2.80E-02
59	GO:0004672: protein kinase activity	2.92E-02
60	GO:0015035: protein disulfide oxidoreductase activity	3.42E-02
61	GO:0004252: serine-type endopeptidase activity	4.23E-02
62	GO:0030170: pyridoxal phosphate binding	4.23E-02
63	GO:0030246: carbohydrate binding	4.77E-02
64	GO:0043565: sequence-specific DNA binding	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	2.00E-05
2	GO:0005886: plasma membrane	5.14E-05
3	GO:0005829: cytosol	1.91E-04
4	GO:0030134: ER to Golgi transport vesicle	2.24E-04
5	GO:0005839: proteasome core complex	3.65E-04
6	GO:0005782: peroxisomal matrix	3.73E-04
7	GO:0005801: cis-Golgi network	1.31E-03
8	GO:0031597: cytosolic proteasome complex	1.31E-03
9	GO:0031595: nuclear proteasome complex	1.54E-03
10	GO:0031305: integral component of mitochondrial inner membrane	1.78E-03
11	GO:0019773: proteasome core complex, alpha-subunit complex	2.03E-03
12	GO:0008540: proteasome regulatory particle, base subcomplex	2.56E-03
13	GO:0005740: mitochondrial envelope	2.85E-03
14	GO:0008541: proteasome regulatory particle, lid subcomplex	3.14E-03
15	GO:0005741: mitochondrial outer membrane	5.83E-03
16	GO:0005744: mitochondrial inner membrane presequence translocase complex	6.98E-03
17	GO:0016021: integral component of membrane	8.68E-03
18	GO:0019005: SCF ubiquitin ligase complex	1.49E-02
19	GO:0043231: intracellular membrane-bounded organelle	2.22E-02
20	GO:0005635: nuclear envelope	2.73E-02
21	GO:0005783: endoplasmic reticulum	2.75E-02
22	GO:0005618: cell wall	3.32E-02
23	GO:0009705: plant-type vacuole membrane	4.93E-02