GO Enrichment Analysis of Co-expressed Genes with
AT1G05140
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:0060416: response to growth hormone | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 5 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 6 | GO:0006412: translation | 4.86E-10 |
| 7 | GO:0032544: plastid translation | 1.99E-06 |
| 8 | GO:0015979: photosynthesis | 1.90E-05 |
| 9 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.95E-05 |
| 10 | GO:0042254: ribosome biogenesis | 8.71E-05 |
| 11 | GO:0071482: cellular response to light stimulus | 1.30E-04 |
| 12 | GO:0043489: RNA stabilization | 1.48E-04 |
| 13 | GO:0042371: vitamin K biosynthetic process | 1.48E-04 |
| 14 | GO:0006352: DNA-templated transcription, initiation | 2.65E-04 |
| 15 | GO:0009773: photosynthetic electron transport in photosystem I | 2.65E-04 |
| 16 | GO:0080148: negative regulation of response to water deprivation | 3.38E-04 |
| 17 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.38E-04 |
| 18 | GO:0034755: iron ion transmembrane transport | 3.38E-04 |
| 19 | GO:0010207: photosystem II assembly | 3.92E-04 |
| 20 | GO:0006954: inflammatory response | 5.54E-04 |
| 21 | GO:0006518: peptide metabolic process | 5.54E-04 |
| 22 | GO:0005977: glycogen metabolic process | 5.54E-04 |
| 23 | GO:0006011: UDP-glucose metabolic process | 5.54E-04 |
| 24 | GO:0009735: response to cytokinin | 6.84E-04 |
| 25 | GO:2001141: regulation of RNA biosynthetic process | 7.93E-04 |
| 26 | GO:0009800: cinnamic acid biosynthetic process | 7.93E-04 |
| 27 | GO:0071483: cellular response to blue light | 1.05E-03 |
| 28 | GO:0006542: glutamine biosynthetic process | 1.05E-03 |
| 29 | GO:0019676: ammonia assimilation cycle | 1.05E-03 |
| 30 | GO:0006749: glutathione metabolic process | 1.05E-03 |
| 31 | GO:0006564: L-serine biosynthetic process | 1.33E-03 |
| 32 | GO:0009247: glycolipid biosynthetic process | 1.33E-03 |
| 33 | GO:0010942: positive regulation of cell death | 1.63E-03 |
| 34 | GO:0042549: photosystem II stabilization | 1.63E-03 |
| 35 | GO:0006559: L-phenylalanine catabolic process | 1.63E-03 |
| 36 | GO:0032973: amino acid export | 1.63E-03 |
| 37 | GO:0010027: thylakoid membrane organization | 1.85E-03 |
| 38 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.96E-03 |
| 39 | GO:0009854: oxidative photosynthetic carbon pathway | 1.96E-03 |
| 40 | GO:0009645: response to low light intensity stimulus | 2.30E-03 |
| 41 | GO:0009610: response to symbiotic fungus | 2.30E-03 |
| 42 | GO:0043090: amino acid import | 2.30E-03 |
| 43 | GO:0050829: defense response to Gram-negative bacterium | 2.30E-03 |
| 44 | GO:0009850: auxin metabolic process | 2.66E-03 |
| 45 | GO:0019375: galactolipid biosynthetic process | 2.66E-03 |
| 46 | GO:0009704: de-etiolation | 2.66E-03 |
| 47 | GO:0009231: riboflavin biosynthetic process | 2.66E-03 |
| 48 | GO:0052543: callose deposition in cell wall | 2.66E-03 |
| 49 | GO:0007568: aging | 2.77E-03 |
| 50 | GO:0009699: phenylpropanoid biosynthetic process | 3.04E-03 |
| 51 | GO:0080144: amino acid homeostasis | 3.44E-03 |
| 52 | GO:0009821: alkaloid biosynthetic process | 3.44E-03 |
| 53 | GO:0009658: chloroplast organization | 3.56E-03 |
| 54 | GO:0010205: photoinhibition | 3.86E-03 |
| 55 | GO:0009744: response to sucrose | 3.90E-03 |
| 56 | GO:0009409: response to cold | 4.67E-03 |
| 57 | GO:0080167: response to karrikin | 4.68E-03 |
| 58 | GO:0006879: cellular iron ion homeostasis | 4.73E-03 |
| 59 | GO:0009698: phenylpropanoid metabolic process | 4.73E-03 |
| 60 | GO:0019684: photosynthesis, light reaction | 4.73E-03 |
| 61 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.73E-03 |
| 62 | GO:0010628: positive regulation of gene expression | 5.68E-03 |
| 63 | GO:0006006: glucose metabolic process | 5.68E-03 |
| 64 | GO:0009767: photosynthetic electron transport chain | 5.68E-03 |
| 65 | GO:0019253: reductive pentose-phosphate cycle | 6.17E-03 |
| 66 | GO:0090351: seedling development | 6.67E-03 |
| 67 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.29E-03 |
| 68 | GO:0019915: lipid storage | 8.85E-03 |
| 69 | GO:0031408: oxylipin biosynthetic process | 8.85E-03 |
| 70 | GO:0030433: ubiquitin-dependent ERAD pathway | 9.43E-03 |
| 71 | GO:0016226: iron-sulfur cluster assembly | 9.43E-03 |
| 72 | GO:0006284: base-excision repair | 1.06E-02 |
| 73 | GO:0009561: megagametogenesis | 1.06E-02 |
| 74 | GO:0009790: embryo development | 1.09E-02 |
| 75 | GO:0000413: protein peptidyl-prolyl isomerization | 1.19E-02 |
| 76 | GO:0006413: translational initiation | 1.21E-02 |
| 77 | GO:0007623: circadian rhythm | 1.29E-02 |
| 78 | GO:0009416: response to light stimulus | 1.59E-02 |
| 79 | GO:0009611: response to wounding | 1.63E-02 |
| 80 | GO:0046686: response to cadmium ion | 2.06E-02 |
| 81 | GO:0006457: protein folding | 2.20E-02 |
| 82 | GO:0009651: response to salt stress | 2.24E-02 |
| 83 | GO:0018298: protein-chromophore linkage | 2.28E-02 |
| 84 | GO:0000160: phosphorelay signal transduction system | 2.36E-02 |
| 85 | GO:0009407: toxin catabolic process | 2.45E-02 |
| 86 | GO:0009631: cold acclimation | 2.53E-02 |
| 87 | GO:0048527: lateral root development | 2.53E-02 |
| 88 | GO:0045087: innate immune response | 2.70E-02 |
| 89 | GO:0009637: response to blue light | 2.70E-02 |
| 90 | GO:0009853: photorespiration | 2.70E-02 |
| 91 | GO:0055114: oxidation-reduction process | 2.80E-02 |
| 92 | GO:0010114: response to red light | 3.23E-02 |
| 93 | GO:0051707: response to other organism | 3.23E-02 |
| 94 | GO:0000209: protein polyubiquitination | 3.33E-02 |
| 95 | GO:0009644: response to high light intensity | 3.42E-02 |
| 96 | GO:0009636: response to toxic substance | 3.51E-02 |
| 97 | GO:0009736: cytokinin-activated signaling pathway | 4.00E-02 |
| 98 | GO:0006364: rRNA processing | 4.00E-02 |
| 99 | GO:0008152: metabolic process | 4.04E-02 |
| 100 | GO:0006096: glycolytic process | 4.50E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 3 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
| 4 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 5 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 6 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 7 | GO:0019843: rRNA binding | 6.32E-13 |
| 8 | GO:0003735: structural constituent of ribosome | 4.39E-12 |
| 9 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.35E-06 |
| 10 | GO:0001053: plastid sigma factor activity | 1.75E-05 |
| 11 | GO:0016987: sigma factor activity | 1.75E-05 |
| 12 | GO:0005528: FK506 binding | 2.32E-05 |
| 13 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 1.30E-04 |
| 14 | GO:0052638: indole-3-butyrate beta-glucosyltransferase activity | 1.48E-04 |
| 15 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.38E-04 |
| 16 | GO:0042389: omega-3 fatty acid desaturase activity | 3.38E-04 |
| 17 | GO:0004617: phosphoglycerate dehydrogenase activity | 3.38E-04 |
| 18 | GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | 3.38E-04 |
| 19 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 3.38E-04 |
| 20 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 3.38E-04 |
| 21 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.38E-04 |
| 22 | GO:0008266: poly(U) RNA binding | 3.92E-04 |
| 23 | GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity | 5.54E-04 |
| 24 | GO:0045548: phenylalanine ammonia-lyase activity | 5.54E-04 |
| 25 | GO:0003935: GTP cyclohydrolase II activity | 5.54E-04 |
| 26 | GO:0035250: UDP-galactosyltransferase activity | 7.93E-04 |
| 27 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 7.93E-04 |
| 28 | GO:0004356: glutamate-ammonia ligase activity | 1.33E-03 |
| 29 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.33E-03 |
| 30 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.33E-03 |
| 31 | GO:0016597: amino acid binding | 1.75E-03 |
| 32 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.96E-03 |
| 33 | GO:0003743: translation initiation factor activity | 2.49E-03 |
| 34 | GO:0004033: aldo-keto reductase (NADP) activity | 2.66E-03 |
| 35 | GO:0016844: strictosidine synthase activity | 3.86E-03 |
| 36 | GO:0005381: iron ion transmembrane transporter activity | 3.86E-03 |
| 37 | GO:0051287: NAD binding | 4.72E-03 |
| 38 | GO:0008794: arsenate reductase (glutaredoxin) activity | 4.73E-03 |
| 39 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 5.25E-03 |
| 40 | GO:0031072: heat shock protein binding | 5.68E-03 |
| 41 | GO:0031409: pigment binding | 7.20E-03 |
| 42 | GO:0051536: iron-sulfur cluster binding | 7.74E-03 |
| 43 | GO:0010181: FMN binding | 1.32E-02 |
| 44 | GO:0008194: UDP-glycosyltransferase activity | 1.45E-02 |
| 45 | GO:0048038: quinone binding | 1.45E-02 |
| 46 | GO:0000156: phosphorelay response regulator activity | 1.59E-02 |
| 47 | GO:0016491: oxidoreductase activity | 1.60E-02 |
| 48 | GO:0016168: chlorophyll binding | 1.97E-02 |
| 49 | GO:0016788: hydrolase activity, acting on ester bonds | 2.04E-02 |
| 50 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.20E-02 |
| 51 | GO:0004222: metalloendopeptidase activity | 2.45E-02 |
| 52 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 2.53E-02 |
| 53 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.79E-02 |
| 54 | GO:0050661: NADP binding | 2.96E-02 |
| 55 | GO:0004364: glutathione transferase activity | 3.14E-02 |
| 56 | GO:0004185: serine-type carboxypeptidase activity | 3.23E-02 |
| 57 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.42E-02 |
| 58 | GO:0005509: calcium ion binding | 3.48E-02 |
| 59 | GO:0009055: electron carrier activity | 3.93E-02 |
| 60 | GO:0015171: amino acid transmembrane transporter activity | 4.30E-02 |
| 61 | GO:0031625: ubiquitin protein ligase binding | 4.30E-02 |
| 62 | GO:0045330: aspartyl esterase activity | 4.30E-02 |
| 63 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 4.81E-02 |
| 64 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 4.81E-02 |
| 65 | GO:0030599: pectinesterase activity | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 6.93E-47 |
| 4 | GO:0009570: chloroplast stroma | 7.79E-26 |
| 5 | GO:0009941: chloroplast envelope | 1.54E-21 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 3.47E-20 |
| 7 | GO:0009534: chloroplast thylakoid | 5.25E-12 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 2.56E-11 |
| 9 | GO:0009579: thylakoid | 9.26E-11 |
| 10 | GO:0000312: plastid small ribosomal subunit | 1.87E-09 |
| 11 | GO:0005840: ribosome | 3.10E-08 |
| 12 | GO:0031977: thylakoid lumen | 1.26E-06 |
| 13 | GO:0000311: plastid large ribosomal subunit | 8.58E-06 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 2.74E-05 |
| 15 | GO:0019898: extrinsic component of membrane | 8.73E-05 |
| 16 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.48E-04 |
| 17 | GO:0009547: plastid ribosome | 1.48E-04 |
| 18 | GO:0009782: photosystem I antenna complex | 1.48E-04 |
| 19 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.60E-04 |
| 20 | GO:0042170: plastid membrane | 3.38E-04 |
| 21 | GO:0030095: chloroplast photosystem II | 3.92E-04 |
| 22 | GO:0042646: plastid nucleoid | 7.93E-04 |
| 23 | GO:0009706: chloroplast inner membrane | 1.03E-03 |
| 24 | GO:0010319: stromule | 1.65E-03 |
| 25 | GO:0009295: nucleoid | 1.65E-03 |
| 26 | GO:0016363: nuclear matrix | 1.96E-03 |
| 27 | GO:0005762: mitochondrial large ribosomal subunit | 1.96E-03 |
| 28 | GO:0015934: large ribosomal subunit | 2.77E-03 |
| 29 | GO:0022627: cytosolic small ribosomal subunit | 2.92E-03 |
| 30 | GO:0005763: mitochondrial small ribosomal subunit | 3.44E-03 |
| 31 | GO:0016020: membrane | 3.53E-03 |
| 32 | GO:0031969: chloroplast membrane | 4.68E-03 |
| 33 | GO:0019013: viral nucleocapsid | 5.68E-03 |
| 34 | GO:0030076: light-harvesting complex | 6.67E-03 |
| 35 | GO:0015935: small ribosomal subunit | 8.85E-03 |
| 36 | GO:0009522: photosystem I | 1.32E-02 |
| 37 | GO:0009536: plastid | 1.44E-02 |
| 38 | GO:0071944: cell periphery | 1.59E-02 |
| 39 | GO:0030529: intracellular ribonucleoprotein complex | 1.89E-02 |