co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090706: specification of plant organ position	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
6	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
7	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
8	GO:0006000: fructose metabolic process	9.47E-06
9	GO:0009644: response to high light intensity	1.04E-05
10	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.15E-05
11	GO:0015994: chlorophyll metabolic process	3.91E-05
12	GO:1902183: regulation of shoot apical meristem development	6.26E-05
13	GO:0010158: abaxial cell fate specification	6.26E-05
14	GO:0008610: lipid biosynthetic process	2.12E-04
15	GO:0016119: carotene metabolic process	2.36E-04
16	GO:0015969: guanosine tetraphosphate metabolic process	2.36E-04
17	GO:0051180: vitamin transport	2.36E-04
18	GO:0070509: calcium ion import	2.36E-04
19	GO:0007263: nitric oxide mediated signal transduction	2.36E-04
20	GO:0043953: protein transport by the Tat complex	2.36E-04
21	GO:0030974: thiamine pyrophosphate transport	2.36E-04
22	GO:0006824: cobalt ion transport	2.36E-04
23	GO:0010480: microsporocyte differentiation	2.36E-04
24	GO:0031338: regulation of vesicle fusion	2.36E-04
25	GO:0006723: cuticle hydrocarbon biosynthetic process	2.36E-04
26	GO:0000481: maturation of 5S rRNA	2.36E-04
27	GO:0065002: intracellular protein transmembrane transport	2.36E-04
28	GO:0043609: regulation of carbon utilization	2.36E-04
29	GO:0034337: RNA folding	2.36E-04
30	GO:0010450: inflorescence meristem growth	2.36E-04
31	GO:0008152: metabolic process	2.39E-04
32	GO:0006002: fructose 6-phosphate metabolic process	2.63E-04
33	GO:0071482: cellular response to light stimulus	2.63E-04
34	GO:2000024: regulation of leaf development	3.18E-04
35	GO:0009773: photosynthetic electron transport in photosystem I	5.11E-04
36	GO:0009915: phloem sucrose loading	5.24E-04
37	GO:0016560: protein import into peroxisome matrix, docking	5.24E-04
38	GO:0015893: drug transport	5.24E-04
39	GO:0034755: iron ion transmembrane transport	5.24E-04
40	GO:0016122: xanthophyll metabolic process	5.24E-04
41	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	5.24E-04
42	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.24E-04
43	GO:0010270: photosystem II oxygen evolving complex assembly	5.24E-04
44	GO:0009718: anthocyanin-containing compound biosynthetic process	6.63E-04
45	GO:0043447: alkane biosynthetic process	8.52E-04
46	GO:0006013: mannose metabolic process	8.52E-04
47	GO:0090630: activation of GTPase activity	8.52E-04
48	GO:0045165: cell fate commitment	8.52E-04
49	GO:0031022: nuclear migration along microfilament	8.52E-04
50	GO:0006629: lipid metabolic process	9.45E-04
51	GO:0009944: polarity specification of adaxial/abaxial axis	1.02E-03
52	GO:0080170: hydrogen peroxide transmembrane transport	1.21E-03
53	GO:0006515: misfolded or incompletely synthesized protein catabolic process	1.21E-03
54	GO:0071484: cellular response to light intensity	1.21E-03
55	GO:0045727: positive regulation of translation	1.62E-03
56	GO:0010023: proanthocyanidin biosynthetic process	1.62E-03
57	GO:0042335: cuticle development	1.86E-03
58	GO:0042631: cellular response to water deprivation	1.86E-03
59	GO:0010154: fruit development	2.00E-03
60	GO:0046785: microtubule polymerization	2.07E-03
61	GO:0016120: carotene biosynthetic process	2.07E-03
62	GO:0010117: photoprotection	2.07E-03
63	GO:0009904: chloroplast accumulation movement	2.07E-03
64	GO:0016123: xanthophyll biosynthetic process	2.07E-03
65	GO:0009913: epidermal cell differentiation	2.55E-03
66	GO:0006828: manganese ion transport	2.55E-03
67	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.55E-03
68	GO:0000741: karyogamy	2.55E-03
69	GO:0006751: glutathione catabolic process	2.55E-03
70	GO:0042549: photosystem II stabilization	2.55E-03
71	GO:0006979: response to oxidative stress	2.64E-03
72	GO:0055114: oxidation-reduction process	2.79E-03
73	GO:0010067: procambium histogenesis	3.06E-03
74	GO:0009903: chloroplast avoidance movement	3.06E-03
75	GO:0010189: vitamin E biosynthetic process	3.06E-03
76	GO:0009854: oxidative photosynthetic carbon pathway	3.06E-03
77	GO:0016126: sterol biosynthetic process	3.56E-03
78	GO:1900056: negative regulation of leaf senescence	3.61E-03
79	GO:0048437: floral organ development	3.61E-03
80	GO:0010196: nonphotochemical quenching	3.61E-03
81	GO:0009645: response to low light intensity stimulus	3.61E-03
82	GO:0006402: mRNA catabolic process	4.19E-03
83	GO:0030091: protein repair	4.19E-03
84	GO:0015995: chlorophyll biosynthetic process	4.19E-03
85	GO:0009850: auxin metabolic process	4.19E-03
86	GO:0032508: DNA duplex unwinding	4.19E-03
87	GO:0018298: protein-chromophore linkage	4.64E-03
88	GO:0007623: circadian rhythm	4.76E-03
89	GO:0032544: plastid translation	4.79E-03
90	GO:0010093: specification of floral organ identity	4.79E-03
91	GO:0009932: cell tip growth	4.79E-03
92	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.43E-03
93	GO:0010206: photosystem II repair	5.43E-03
94	GO:0000373: Group II intron splicing	5.43E-03
95	GO:0048589: developmental growth	5.43E-03
96	GO:0006810: transport	5.55E-03
97	GO:0009853: photorespiration	5.87E-03
98	GO:0010380: regulation of chlorophyll biosynthetic process	6.09E-03
99	GO:0006779: porphyrin-containing compound biosynthetic process	6.09E-03
100	GO:0006782: protoporphyrinogen IX biosynthetic process	6.78E-03
101	GO:0006816: calcium ion transport	7.50E-03
102	GO:0009750: response to fructose	7.50E-03
103	GO:0048229: gametophyte development	7.50E-03
104	GO:0016485: protein processing	7.50E-03
105	GO:0000038: very long-chain fatty acid metabolic process	7.50E-03
106	GO:0005983: starch catabolic process	8.25E-03
107	GO:0010152: pollen maturation	8.25E-03
108	GO:0010102: lateral root morphogenesis	9.02E-03
109	GO:2000028: regulation of photoperiodism, flowering	9.02E-03
110	GO:0018107: peptidyl-threonine phosphorylation	9.02E-03
111	GO:0010075: regulation of meristem growth	9.02E-03
112	GO:0006094: gluconeogenesis	9.02E-03
113	GO:0009767: photosynthetic electron transport chain	9.02E-03
114	GO:0005986: sucrose biosynthetic process	9.02E-03
115	GO:0010143: cutin biosynthetic process	9.82E-03
116	GO:0010207: photosystem II assembly	9.82E-03
117	GO:0009933: meristem structural organization	9.82E-03
118	GO:0010223: secondary shoot formation	9.82E-03
119	GO:0009266: response to temperature stimulus	9.82E-03
120	GO:0009934: regulation of meristem structural organization	9.82E-03
121	GO:0009723: response to ethylene	1.00E-02
122	GO:0009416: response to light stimulus	1.00E-02
123	GO:0010030: positive regulation of seed germination	1.06E-02
124	GO:0010053: root epidermal cell differentiation	1.06E-02
125	GO:0006857: oligopeptide transport	1.10E-02
126	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.14E-02
127	GO:0010025: wax biosynthetic process	1.15E-02
128	GO:0006833: water transport	1.15E-02
129	GO:0005992: trehalose biosynthetic process	1.24E-02
130	GO:0015979: photosynthesis	1.29E-02
131	GO:0009626: plant-type hypersensitive response	1.29E-02
132	GO:0006418: tRNA aminoacylation for protein translation	1.32E-02
133	GO:0009768: photosynthesis, light harvesting in photosystem I	1.32E-02
134	GO:0055085: transmembrane transport	1.44E-02
135	GO:0040007: growth	1.61E-02
136	GO:0001944: vasculature development	1.61E-02
137	GO:0048443: stamen development	1.70E-02
138	GO:0019722: calcium-mediated signaling	1.70E-02
139	GO:0010089: xylem development	1.70E-02
140	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.80E-02
141	GO:0016117: carotenoid biosynthetic process	1.80E-02
142	GO:0005975: carbohydrate metabolic process	1.82E-02
143	GO:0042391: regulation of membrane potential	1.91E-02
144	GO:0034220: ion transmembrane transport	1.91E-02
145	GO:0048653: anther development	1.91E-02
146	GO:0010197: polar nucleus fusion	2.01E-02
147	GO:0042744: hydrogen peroxide catabolic process	2.08E-02
148	GO:0007018: microtubule-based movement	2.12E-02
149	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.34E-02
150	GO:0016032: viral process	2.45E-02
151	GO:0048235: pollen sperm cell differentiation	2.45E-02
152	GO:0030163: protein catabolic process	2.56E-02
153	GO:0010090: trichome morphogenesis	2.56E-02
154	GO:0009567: double fertilization forming a zygote and endosperm	2.68E-02
155	GO:0071805: potassium ion transmembrane transport	2.80E-02
156	GO:0007267: cell-cell signaling	2.80E-02
157	GO:0010027: thylakoid membrane organization	3.04E-02
158	GO:0009737: response to abscisic acid	3.22E-02
159	GO:0042128: nitrate assimilation	3.29E-02
160	GO:0016311: dephosphorylation	3.54E-02
161	GO:0009817: defense response to fungus, incompatible interaction	3.67E-02
162	GO:0048481: plant ovule development	3.67E-02
163	GO:0000160: phosphorelay signal transduction system	3.80E-02
164	GO:0009658: chloroplast organization	3.90E-02
165	GO:0006499: N-terminal protein myristoylation	3.93E-02
166	GO:0048527: lateral root development	4.07E-02
167	GO:0009910: negative regulation of flower development	4.07E-02
168	GO:0045893: positive regulation of transcription, DNA-templated	4.34E-02
169	GO:0006839: mitochondrial transport	4.76E-02
170	GO:0006631: fatty acid metabolic process	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
2	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
3	GO:0009976: tocopherol cyclase activity	0.00E+00
4	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
5	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
6	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
7	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
8	GO:0008465: glycerate dehydrogenase activity	0.00E+00
9	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
10	GO:1990534: thermospermine oxidase activity	0.00E+00
11	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
12	GO:0045436: lycopene beta cyclase activity	0.00E+00
13	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
14	GO:0016787: hydrolase activity	8.19E-08
15	GO:0005528: FK506 binding	1.87E-06
16	GO:0004506: squalene monooxygenase activity	3.91E-05
17	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.91E-05
18	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.63E-04
19	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	2.36E-04
20	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	2.36E-04
21	GO:0050139: nicotinate-N-glucosyltransferase activity	2.36E-04
22	GO:0090422: thiamine pyrophosphate transporter activity	2.36E-04
23	GO:0015929: hexosaminidase activity	5.24E-04
24	GO:0004563: beta-N-acetylhexosaminidase activity	5.24E-04
25	GO:0008728: GTP diphosphokinase activity	5.24E-04
26	GO:0010291: carotene beta-ring hydroxylase activity	5.24E-04
27	GO:0047746: chlorophyllase activity	5.24E-04
28	GO:0016868: intramolecular transferase activity, phosphotransferases	5.24E-04
29	GO:0003839: gamma-glutamylcyclotransferase activity	5.24E-04
30	GO:0005094: Rho GDP-dissociation inhibitor activity	5.24E-04
31	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.24E-04
32	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.24E-04
33	GO:0008081: phosphoric diester hydrolase activity	6.63E-04
34	GO:0008266: poly(U) RNA binding	7.46E-04
35	GO:0050734: hydroxycinnamoyltransferase activity	8.52E-04
36	GO:0002161: aminoacyl-tRNA editing activity	8.52E-04
37	GO:0004148: dihydrolipoyl dehydrogenase activity	8.52E-04
38	GO:0019201: nucleotide kinase activity	1.21E-03
39	GO:0001872: (1->3)-beta-D-glucan binding	1.21E-03
40	GO:0010011: auxin binding	1.62E-03
41	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.62E-03
42	GO:0008453: alanine-glyoxylate transaminase activity	1.62E-03
43	GO:0017137: Rab GTPase binding	2.07E-03
44	GO:0050660: flavin adenine dinucleotide binding	2.08E-03
45	GO:0048038: quinone binding	2.47E-03
46	GO:0035673: oligopeptide transmembrane transporter activity	2.55E-03
47	GO:0042578: phosphoric ester hydrolase activity	2.55E-03
48	GO:2001070: starch binding	2.55E-03
49	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.06E-03
50	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.06E-03
51	GO:0004017: adenylate kinase activity	3.06E-03
52	GO:0005261: cation channel activity	3.06E-03
53	GO:0004559: alpha-mannosidase activity	3.06E-03
54	GO:0005242: inward rectifier potassium channel activity	3.06E-03
55	GO:0016168: chlorophyll binding	3.76E-03
56	GO:0008236: serine-type peptidase activity	4.41E-03
57	GO:0005096: GTPase activator activity	4.87E-03
58	GO:0008017: microtubule binding	5.05E-03
59	GO:0005381: iron ion transmembrane transporter activity	6.09E-03
60	GO:0005384: manganese ion transmembrane transporter activity	6.09E-03
61	GO:0004805: trehalose-phosphatase activity	6.78E-03
62	GO:0000049: tRNA binding	8.25E-03
63	GO:0015198: oligopeptide transporter activity	8.25E-03
64	GO:0004565: beta-galactosidase activity	9.02E-03
65	GO:0015095: magnesium ion transmembrane transporter activity	9.02E-03
66	GO:0005262: calcium channel activity	9.02E-03
67	GO:0008131: primary amine oxidase activity	9.82E-03
68	GO:0004190: aspartic-type endopeptidase activity	1.06E-02
69	GO:0016298: lipase activity	1.06E-02
70	GO:0030552: cAMP binding	1.06E-02
71	GO:0030553: cGMP binding	1.06E-02
72	GO:0005215: transporter activity	1.06E-02
73	GO:0003777: microtubule motor activity	1.13E-02
74	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.15E-02
75	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.15E-02
76	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.15E-02
77	GO:0031409: pigment binding	1.15E-02
78	GO:0003954: NADH dehydrogenase activity	1.24E-02
79	GO:0005216: ion channel activity	1.32E-02
80	GO:0015079: potassium ion transmembrane transporter activity	1.32E-02
81	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.33E-02
82	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.33E-02
83	GO:0004176: ATP-dependent peptidase activity	1.42E-02
84	GO:0033612: receptor serine/threonine kinase binding	1.42E-02
85	GO:0004871: signal transducer activity	1.46E-02
86	GO:0022891: substrate-specific transmembrane transporter activity	1.61E-02
87	GO:0004812: aminoacyl-tRNA ligase activity	1.80E-02
88	GO:0030551: cyclic nucleotide binding	1.91E-02
89	GO:0004252: serine-type endopeptidase activity	2.03E-02
90	GO:0046872: metal ion binding	2.04E-02
91	GO:0050662: coenzyme binding	2.12E-02
92	GO:0016853: isomerase activity	2.12E-02
93	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.36E-02
94	GO:0004518: nuclease activity	2.45E-02
95	GO:0000156: phosphorelay response regulator activity	2.56E-02
96	GO:0008194: UDP-glycosyltransferase activity	2.83E-02
97	GO:0003743: translation initiation factor activity	2.95E-02
98	GO:0005524: ATP binding	2.97E-02
99	GO:0015250: water channel activity	3.04E-02
100	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.21E-02
101	GO:0030247: polysaccharide binding	3.41E-02
102	GO:0015238: drug transmembrane transporter activity	3.80E-02
103	GO:0004601: peroxidase activity	3.90E-02
104	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.07E-02
105	GO:0050897: cobalt ion binding	4.07E-02
106	GO:0016491: oxidoreductase activity	4.28E-02
107	GO:0003746: translation elongation factor activity	4.34E-02

Rank	GO Term	Adjusted P value
1	GO:0043233: organelle lumen	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009507: chloroplast	3.84E-14
5	GO:0009570: chloroplast stroma	1.49E-09
6	GO:0009534: chloroplast thylakoid	4.64E-09
7	GO:0009535: chloroplast thylakoid membrane	1.33E-08
8	GO:0009543: chloroplast thylakoid lumen	3.03E-07
9	GO:0009941: chloroplast envelope	7.49E-06
10	GO:0009782: photosystem I antenna complex	2.36E-04
11	GO:0009344: nitrite reductase complex [NAD(P)H]	2.36E-04
12	GO:0031361: integral component of thylakoid membrane	2.36E-04
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.18E-04
14	GO:0010287: plastoglobule	4.88E-04
15	GO:0031304: intrinsic component of mitochondrial inner membrane	5.24E-04
16	GO:0005782: peroxisomal matrix	8.52E-04
17	GO:0033281: TAT protein transport complex	8.52E-04
18	GO:0009579: thylakoid	9.21E-04
19	GO:0042651: thylakoid membrane	1.12E-03
20	GO:0030660: Golgi-associated vesicle membrane	1.62E-03
21	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.62E-03
22	GO:0031969: chloroplast membrane	2.32E-03
23	GO:0005886: plasma membrane	2.46E-03
24	GO:0005777: peroxisome	3.29E-03
25	GO:0030529: intracellular ribonucleoprotein complex	3.56E-03
26	GO:0009533: chloroplast stromal thylakoid	3.61E-03
27	GO:0009505: plant-type cell wall	4.06E-03
28	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.19E-03
29	GO:0048046: apoplast	4.53E-03
30	GO:0055028: cortical microtubule	6.78E-03
31	GO:0031977: thylakoid lumen	6.98E-03
32	GO:0005765: lysosomal membrane	7.50E-03
33	GO:0032040: small-subunit processome	8.25E-03
34	GO:0030095: chloroplast photosystem II	9.82E-03
35	GO:0030076: light-harvesting complex	1.06E-02
36	GO:0009654: photosystem II oxygen evolving complex	1.32E-02
37	GO:0005871: kinesin complex	1.80E-02
38	GO:0043231: intracellular membrane-bounded organelle	2.03E-02
39	GO:0009523: photosystem II	2.23E-02
40	GO:0019898: extrinsic component of membrane	2.23E-02
41	GO:0005887: integral component of plasma membrane	2.63E-02
42	GO:0046658: anchored component of plasma membrane	3.34E-02
43	GO:0005874: microtubule	4.66E-02