co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G03900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030970: retrograde protein transport, ER to cytosol	0.00E+00
2	GO:0006182: cGMP biosynthetic process	0.00E+00
3	GO:0043462: regulation of ATPase activity	0.00E+00
4	GO:0010421: hydrogen peroxide-mediated programmed cell death	9.14E-05
5	GO:0019374: galactolipid metabolic process	2.16E-04
6	GO:0015865: purine nucleotide transport	2.16E-04
7	GO:1902000: homogentisate catabolic process	2.16E-04
8	GO:0008535: respiratory chain complex IV assembly	2.16E-04
9	GO:0097054: L-glutamate biosynthetic process	2.16E-04
10	GO:0031648: protein destabilization	2.16E-04
11	GO:0071395: cellular response to jasmonic acid stimulus	2.16E-04
12	GO:0009072: aromatic amino acid family metabolic process	3.61E-04
13	GO:0006556: S-adenosylmethionine biosynthetic process	3.61E-04
14	GO:0030433: ubiquitin-dependent ERAD pathway	3.80E-04
15	GO:0046686: response to cadmium ion	4.41E-04
16	GO:0046902: regulation of mitochondrial membrane permeability	5.20E-04
17	GO:0002679: respiratory burst involved in defense response	5.20E-04
18	GO:0006537: glutamate biosynthetic process	5.20E-04
19	GO:0001676: long-chain fatty acid metabolic process	5.20E-04
20	GO:0008152: metabolic process	6.55E-04
21	GO:0010363: regulation of plant-type hypersensitive response	6.90E-04
22	GO:0019676: ammonia assimilation cycle	6.90E-04
23	GO:0046345: abscisic acid catabolic process	6.90E-04
24	GO:0010225: response to UV-C	8.73E-04
25	GO:0046283: anthocyanin-containing compound metabolic process	8.73E-04
26	GO:0006574: valine catabolic process	1.07E-03
27	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.07E-03
28	GO:0009617: response to bacterium	1.13E-03
29	GO:0009094: L-phenylalanine biosynthetic process	1.27E-03
30	GO:0071446: cellular response to salicylic acid stimulus	1.49E-03
31	GO:0006644: phospholipid metabolic process	1.72E-03
32	GO:0006631: fatty acid metabolic process	1.89E-03
33	GO:0017004: cytochrome complex assembly	1.96E-03
34	GO:0009808: lignin metabolic process	1.96E-03
35	GO:0009651: response to salt stress	2.02E-03
36	GO:0051707: response to other organism	2.05E-03
37	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.13E-03
38	GO:0007338: single fertilization	2.21E-03
39	GO:0046685: response to arsenic-containing substance	2.21E-03
40	GO:0006098: pentose-phosphate shunt	2.21E-03
41	GO:0051865: protein autoubiquitination	2.21E-03
42	GO:0010112: regulation of systemic acquired resistance	2.21E-03
43	GO:0008202: steroid metabolic process	2.48E-03
44	GO:0009688: abscisic acid biosynthetic process	2.75E-03
45	GO:0051603: proteolysis involved in cellular protein catabolic process	2.84E-03
46	GO:0012501: programmed cell death	3.32E-03
47	GO:0015706: nitrate transport	3.32E-03
48	GO:0009408: response to heat	3.33E-03
49	GO:0010167: response to nitrate	4.26E-03
50	GO:0010053: root epidermal cell differentiation	4.26E-03
51	GO:0006874: cellular calcium ion homeostasis	5.27E-03
52	GO:0006730: one-carbon metabolic process	5.98E-03
53	GO:0031348: negative regulation of defense response	5.98E-03
54	GO:0009693: ethylene biosynthetic process	6.35E-03
55	GO:0009611: response to wounding	7.09E-03
56	GO:0010118: stomatal movement	7.51E-03
57	GO:0007166: cell surface receptor signaling pathway	7.66E-03
58	GO:0009851: auxin biosynthetic process	8.74E-03
59	GO:0010193: response to ozone	9.16E-03
60	GO:0007264: small GTPase mediated signal transduction	9.60E-03
61	GO:0071281: cellular response to iron ion	1.00E-02
62	GO:1901657: glycosyl compound metabolic process	1.00E-02
63	GO:0006511: ubiquitin-dependent protein catabolic process	1.02E-02
64	GO:0006468: protein phosphorylation	1.04E-02
65	GO:0009567: double fertilization forming a zygote and endosperm	1.05E-02
66	GO:0009911: positive regulation of flower development	1.19E-02
67	GO:0009615: response to virus	1.19E-02
68	GO:0042128: nitrate assimilation	1.28E-02
69	GO:0048573: photoperiodism, flowering	1.33E-02
70	GO:0006950: response to stress	1.33E-02
71	GO:0046777: protein autophosphorylation	1.38E-02
72	GO:0009407: toxin catabolic process	1.54E-02
73	GO:0010043: response to zinc ion	1.59E-02
74	GO:0006099: tricarboxylic acid cycle	1.75E-02
75	GO:0006839: mitochondrial transport	1.86E-02
76	GO:0042542: response to hydrogen peroxide	1.97E-02
77	GO:0006855: drug transmembrane transport	2.26E-02
78	GO:0015031: protein transport	2.28E-02
79	GO:0009846: pollen germination	2.38E-02
80	GO:0009809: lignin biosynthetic process	2.51E-02
81	GO:0006417: regulation of translation	2.70E-02
82	GO:0055114: oxidation-reduction process	2.70E-02
83	GO:0009909: regulation of flower development	2.70E-02
84	GO:0006810: transport	2.74E-02
85	GO:0009620: response to fungus	3.02E-02
86	GO:0009624: response to nematode	3.22E-02
87	GO:0000398: mRNA splicing, via spliceosome	3.57E-02
88	GO:0009845: seed germination	4.00E-02
89	GO:0007165: signal transduction	4.21E-02
90	GO:0055085: transmembrane transport	4.28E-02
91	GO:0006457: protein folding	4.36E-02
92	GO:0006633: fatty acid biosynthetic process	4.45E-02
93	GO:0006413: translational initiation	4.52E-02
94	GO:0040008: regulation of growth	4.60E-02
95	GO:0006952: defense response	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0051670: inulinase activity	0.00E+00
2	GO:0015930: glutamate synthase activity	0.00E+00
3	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
4	GO:0102391: decanoate--CoA ligase activity	2.78E-05
5	GO:0005524: ATP binding	2.92E-05
6	GO:0004467: long-chain fatty acid-CoA ligase activity	3.77E-05
7	GO:0051669: fructan beta-fructosidase activity	9.14E-05
8	GO:0031219: levanase activity	9.14E-05
9	GO:0016041: glutamate synthase (ferredoxin) activity	9.14E-05
10	GO:0004713: protein tyrosine kinase activity	1.13E-04
11	GO:0008194: UDP-glycosyltransferase activity	1.24E-04
12	GO:0032934: sterol binding	2.16E-04
13	GO:0004775: succinate-CoA ligase (ADP-forming) activity	2.16E-04
14	GO:0015036: disulfide oxidoreductase activity	2.16E-04
15	GO:0008517: folic acid transporter activity	2.16E-04
16	GO:0004776: succinate-CoA ligase (GDP-forming) activity	2.16E-04
17	GO:0004298: threonine-type endopeptidase activity	3.47E-04
18	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	3.61E-04
19	GO:0004383: guanylate cyclase activity	3.61E-04
20	GO:0016805: dipeptidase activity	3.61E-04
21	GO:0004478: methionine adenosyltransferase activity	3.61E-04
22	GO:0005093: Rab GDP-dissociation inhibitor activity	3.61E-04
23	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.07E-04
24	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.07E-04
25	GO:0008276: protein methyltransferase activity	5.20E-04
26	GO:0010178: IAA-amino acid conjugate hydrolase activity	5.20E-04
27	GO:0004031: aldehyde oxidase activity	6.90E-04
28	GO:0050302: indole-3-acetaldehyde oxidase activity	6.90E-04
29	GO:0047769: arogenate dehydratase activity	6.90E-04
30	GO:0004664: prephenate dehydratase activity	6.90E-04
31	GO:0010294: abscisic acid glucosyltransferase activity	8.73E-04
32	GO:0005496: steroid binding	8.73E-04
33	GO:0051538: 3 iron, 4 sulfur cluster binding	8.73E-04
34	GO:0005471: ATP:ADP antiporter activity	8.73E-04
35	GO:0031593: polyubiquitin binding	1.07E-03
36	GO:0036402: proteasome-activating ATPase activity	1.07E-03
37	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.27E-03
38	GO:0004674: protein serine/threonine kinase activity	1.28E-03
39	GO:0016491: oxidoreductase activity	1.39E-03
40	GO:0008235: metalloexopeptidase activity	1.49E-03
41	GO:0102425: myricetin 3-O-glucosyltransferase activity	1.49E-03
42	GO:0102360: daphnetin 3-O-glucosyltransferase activity	1.49E-03
43	GO:0008320: protein transmembrane transporter activity	1.49E-03
44	GO:0004620: phospholipase activity	1.49E-03
45	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.72E-03
46	GO:0052747: sinapyl alcohol dehydrogenase activity	1.72E-03
47	GO:0008142: oxysterol binding	1.96E-03
48	GO:0045309: protein phosphorylated amino acid binding	2.48E-03
49	GO:0047617: acyl-CoA hydrolase activity	2.48E-03
50	GO:0015112: nitrate transmembrane transporter activity	2.48E-03
51	GO:0008171: O-methyltransferase activity	2.75E-03
52	GO:0019904: protein domain specific binding	3.03E-03
53	GO:0004177: aminopeptidase activity	3.03E-03
54	GO:0008559: xenobiotic-transporting ATPase activity	3.03E-03
55	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.32E-03
56	GO:0031072: heat shock protein binding	3.63E-03
57	GO:0005217: intracellular ligand-gated ion channel activity	4.26E-03
58	GO:0017025: TBP-class protein binding	4.26E-03
59	GO:0004970: ionotropic glutamate receptor activity	4.26E-03
60	GO:0016758: transferase activity, transferring hexosyl groups	4.73E-03
61	GO:0043424: protein histidine kinase binding	5.27E-03
62	GO:0035251: UDP-glucosyltransferase activity	5.62E-03
63	GO:0016887: ATPase activity	5.80E-03
64	GO:0004672: protein kinase activity	6.96E-03
65	GO:0016757: transferase activity, transferring glycosyl groups	7.31E-03
66	GO:0001085: RNA polymerase II transcription factor binding	7.91E-03
67	GO:0010181: FMN binding	8.32E-03
68	GO:0004197: cysteine-type endopeptidase activity	9.60E-03
69	GO:0008237: metallopeptidase activity	1.09E-02
70	GO:0016597: amino acid binding	1.14E-02
71	GO:0008233: peptidase activity	1.27E-02
72	GO:0102483: scopolin beta-glucosidase activity	1.33E-02
73	GO:0030247: polysaccharide binding	1.33E-02
74	GO:0005096: GTPase activator activity	1.48E-02
75	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.59E-02
76	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.59E-02
77	GO:0030145: manganese ion binding	1.59E-02
78	GO:0004871: signal transducer activity	1.62E-02
79	GO:0008422: beta-glucosidase activity	1.80E-02
80	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.80E-02
81	GO:0004364: glutathione transferase activity	1.97E-02
82	GO:0051537: 2 iron, 2 sulfur cluster binding	2.14E-02
83	GO:0051287: NAD binding	2.32E-02
84	GO:0003729: mRNA binding	2.78E-02
85	GO:0051082: unfolded protein binding	3.22E-02
86	GO:0008026: ATP-dependent helicase activity	3.36E-02
87	GO:0005515: protein binding	3.48E-02
88	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.15E-02
89	GO:0008565: protein transporter activity	4.30E-02
90	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	1.28E-05
2	GO:0031314: extrinsic component of mitochondrial inner membrane	2.16E-04
3	GO:0030134: ER to Golgi transport vesicle	2.16E-04
4	GO:0000502: proteasome complex	2.89E-04
5	GO:0005839: proteasome core complex	3.47E-04
6	GO:0005886: plasma membrane	4.90E-04
7	GO:0005743: mitochondrial inner membrane	5.05E-04
8	GO:0005788: endoplasmic reticulum lumen	1.04E-03
9	GO:0005801: cis-Golgi network	1.27E-03
10	GO:0031597: cytosolic proteasome complex	1.27E-03
11	GO:0031595: nuclear proteasome complex	1.49E-03
12	GO:0008540: proteasome regulatory particle, base subcomplex	2.48E-03
13	GO:0005783: endoplasmic reticulum	2.75E-03
14	GO:0005635: nuclear envelope	2.94E-03
15	GO:0005794: Golgi apparatus	2.99E-03
16	GO:0005773: vacuole	4.98E-03
17	GO:0005777: peroxisome	8.22E-03
18	GO:0005618: cell wall	9.53E-03
19	GO:0009506: plasmodesma	1.09E-02
20	GO:0005667: transcription factor complex	1.28E-02
21	GO:0005643: nuclear pore	1.43E-02
22	GO:0000325: plant-type vacuole	1.59E-02
23	GO:0005819: spindle	1.80E-02
24	GO:0043231: intracellular membrane-bounded organelle	2.10E-02
25	GO:0031966: mitochondrial membrane	2.38E-02
26	GO:0005774: vacuolar membrane	2.52E-02
27	GO:0005681: spliceosomal complex	2.82E-02
28	GO:0016607: nuclear speck	2.89E-02
29	GO:0005834: heterotrimeric G-protein complex	2.96E-02
30	GO:0005730: nucleolus	3.26E-02
31	GO:0009524: phragmoplast	3.93E-02