GO Enrichment Analysis of Co-expressed Genes with
AT1G03130
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 2 | GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process | 0.00E+00 |
| 3 | GO:0009773: photosynthetic electron transport in photosystem I | 7.36E-10 |
| 4 | GO:0015979: photosynthesis | 1.20E-07 |
| 5 | GO:0010205: photoinhibition | 4.56E-06 |
| 6 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.06E-05 |
| 7 | GO:0006810: transport | 1.89E-05 |
| 8 | GO:0006546: glycine catabolic process | 1.97E-05 |
| 9 | GO:0042549: photosystem II stabilization | 4.79E-05 |
| 10 | GO:0000481: maturation of 5S rRNA | 1.58E-04 |
| 11 | GO:0034337: RNA folding | 1.58E-04 |
| 12 | GO:0010206: photosystem II repair | 1.77E-04 |
| 13 | GO:0009638: phototropism | 2.12E-04 |
| 14 | GO:0015995: chlorophyll biosynthetic process | 2.37E-04 |
| 15 | GO:0018298: protein-chromophore linkage | 2.72E-04 |
| 16 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.60E-04 |
| 17 | GO:0035304: regulation of protein dephosphorylation | 3.60E-04 |
| 18 | GO:1900871: chloroplast mRNA modification | 3.60E-04 |
| 19 | GO:0006094: gluconeogenesis | 3.82E-04 |
| 20 | GO:0009644: response to high light intensity | 5.70E-04 |
| 21 | GO:0006000: fructose metabolic process | 5.89E-04 |
| 22 | GO:0006013: mannose metabolic process | 5.89E-04 |
| 23 | GO:0006518: peptide metabolic process | 5.89E-04 |
| 24 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.55E-04 |
| 25 | GO:0009735: response to cytokinin | 8.10E-04 |
| 26 | GO:0051513: regulation of monopolar cell growth | 8.43E-04 |
| 27 | GO:0080170: hydrogen peroxide transmembrane transport | 8.43E-04 |
| 28 | GO:1901332: negative regulation of lateral root development | 8.43E-04 |
| 29 | GO:0010023: proanthocyanidin biosynthetic process | 1.12E-03 |
| 30 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.12E-03 |
| 31 | GO:0045727: positive regulation of translation | 1.12E-03 |
| 32 | GO:0015994: chlorophyll metabolic process | 1.12E-03 |
| 33 | GO:0006461: protein complex assembly | 1.41E-03 |
| 34 | GO:0048759: xylem vessel member cell differentiation | 1.74E-03 |
| 35 | GO:0010256: endomembrane system organization | 1.74E-03 |
| 36 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.74E-03 |
| 37 | GO:0009228: thiamine biosynthetic process | 1.74E-03 |
| 38 | GO:1902456: regulation of stomatal opening | 1.74E-03 |
| 39 | GO:0006596: polyamine biosynthetic process | 1.74E-03 |
| 40 | GO:0008152: metabolic process | 2.03E-03 |
| 41 | GO:0010019: chloroplast-nucleus signaling pathway | 2.09E-03 |
| 42 | GO:0009772: photosynthetic electron transport in photosystem II | 2.45E-03 |
| 43 | GO:1900056: negative regulation of leaf senescence | 2.45E-03 |
| 44 | GO:0010196: nonphotochemical quenching | 2.45E-03 |
| 45 | GO:0009645: response to low light intensity stimulus | 2.45E-03 |
| 46 | GO:0032508: DNA duplex unwinding | 2.84E-03 |
| 47 | GO:0005978: glycogen biosynthetic process | 2.84E-03 |
| 48 | GO:0010218: response to far red light | 2.90E-03 |
| 49 | GO:0032544: plastid translation | 3.25E-03 |
| 50 | GO:0006002: fructose 6-phosphate metabolic process | 3.25E-03 |
| 51 | GO:0071482: cellular response to light stimulus | 3.25E-03 |
| 52 | GO:0009657: plastid organization | 3.25E-03 |
| 53 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 3.67E-03 |
| 54 | GO:0010114: response to red light | 4.29E-03 |
| 55 | GO:0048829: root cap development | 4.58E-03 |
| 56 | GO:0009723: response to ethylene | 4.83E-03 |
| 57 | GO:0019684: photosynthesis, light reaction | 5.05E-03 |
| 58 | GO:0043085: positive regulation of catalytic activity | 5.05E-03 |
| 59 | GO:0009409: response to cold | 5.52E-03 |
| 60 | GO:0009585: red, far-red light phototransduction | 5.77E-03 |
| 61 | GO:0018107: peptidyl-threonine phosphorylation | 6.06E-03 |
| 62 | GO:0009718: anthocyanin-containing compound biosynthetic process | 6.06E-03 |
| 63 | GO:0009767: photosynthetic electron transport chain | 6.06E-03 |
| 64 | GO:0005986: sucrose biosynthetic process | 6.06E-03 |
| 65 | GO:0019253: reductive pentose-phosphate cycle | 6.59E-03 |
| 66 | GO:0010207: photosystem II assembly | 6.59E-03 |
| 67 | GO:0045454: cell redox homeostasis | 6.64E-03 |
| 68 | GO:0005985: sucrose metabolic process | 7.13E-03 |
| 69 | GO:0006636: unsaturated fatty acid biosynthetic process | 7.69E-03 |
| 70 | GO:0006833: water transport | 7.69E-03 |
| 71 | GO:0032259: methylation | 8.20E-03 |
| 72 | GO:0016114: terpenoid biosynthetic process | 9.46E-03 |
| 73 | GO:0003333: amino acid transmembrane transport | 9.46E-03 |
| 74 | GO:0061077: chaperone-mediated protein folding | 9.46E-03 |
| 75 | GO:0010017: red or far-red light signaling pathway | 1.01E-02 |
| 76 | GO:0009686: gibberellin biosynthetic process | 1.07E-02 |
| 77 | GO:0042742: defense response to bacterium | 1.22E-02 |
| 78 | GO:0034220: ion transmembrane transport | 1.27E-02 |
| 79 | GO:0010087: phloem or xylem histogenesis | 1.27E-02 |
| 80 | GO:0010268: brassinosteroid homeostasis | 1.34E-02 |
| 81 | GO:0009958: positive gravitropism | 1.34E-02 |
| 82 | GO:0015986: ATP synthesis coupled proton transport | 1.41E-02 |
| 83 | GO:0007623: circadian rhythm | 1.42E-02 |
| 84 | GO:0019252: starch biosynthetic process | 1.48E-02 |
| 85 | GO:0016132: brassinosteroid biosynthetic process | 1.56E-02 |
| 86 | GO:0010193: response to ozone | 1.56E-02 |
| 87 | GO:0030163: protein catabolic process | 1.71E-02 |
| 88 | GO:0071281: cellular response to iron ion | 1.71E-02 |
| 89 | GO:0016125: sterol metabolic process | 1.78E-02 |
| 90 | GO:0010027: thylakoid membrane organization | 2.02E-02 |
| 91 | GO:0009658: chloroplast organization | 2.21E-02 |
| 92 | GO:0009817: defense response to fungus, incompatible interaction | 2.44E-02 |
| 93 | GO:0010311: lateral root formation | 2.53E-02 |
| 94 | GO:0006865: amino acid transport | 2.80E-02 |
| 95 | GO:0009637: response to blue light | 2.89E-02 |
| 96 | GO:0009926: auxin polar transport | 3.46E-02 |
| 97 | GO:0009737: response to abscisic acid | 3.75E-02 |
| 98 | GO:0016042: lipid catabolic process | 3.92E-02 |
| 99 | GO:0009664: plant-type cell wall organization | 4.07E-02 |
| 100 | GO:0006364: rRNA processing | 4.28E-02 |
| 101 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.38E-02 |
| 102 | GO:0010224: response to UV-B | 4.38E-02 |
| 103 | GO:0006096: glycolytic process | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 3 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 4 | GO:0010487: thermospermine synthase activity | 0.00E+00 |
| 5 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 6 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.97E-05 |
| 7 | GO:0005528: FK506 binding | 2.71E-05 |
| 8 | GO:0016768: spermine synthase activity | 1.58E-04 |
| 9 | GO:0046906: tetrapyrrole binding | 1.58E-04 |
| 10 | GO:0010242: oxygen evolving activity | 1.58E-04 |
| 11 | GO:0045485: omega-6 fatty acid desaturase activity | 1.58E-04 |
| 12 | GO:0051777: ent-kaurenoate oxidase activity | 1.58E-04 |
| 13 | GO:0016168: chlorophyll binding | 2.04E-04 |
| 14 | GO:0047746: chlorophyllase activity | 3.60E-04 |
| 15 | GO:0016868: intramolecular transferase activity, phosphotransferases | 3.60E-04 |
| 16 | GO:0004047: aminomethyltransferase activity | 3.60E-04 |
| 17 | GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity | 3.60E-04 |
| 18 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.60E-04 |
| 19 | GO:0008967: phosphoglycolate phosphatase activity | 3.60E-04 |
| 20 | GO:0008266: poly(U) RNA binding | 4.31E-04 |
| 21 | GO:0031409: pigment binding | 5.37E-04 |
| 22 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 6.28E-04 |
| 23 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 8.43E-04 |
| 24 | GO:0019201: nucleotide kinase activity | 8.43E-04 |
| 25 | GO:0016787: hydrolase activity | 1.11E-03 |
| 26 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 1.12E-03 |
| 27 | GO:0010328: auxin influx transmembrane transporter activity | 1.12E-03 |
| 28 | GO:0048038: quinone binding | 1.41E-03 |
| 29 | GO:0004332: fructose-bisphosphate aldolase activity | 1.74E-03 |
| 30 | GO:0004559: alpha-mannosidase activity | 2.09E-03 |
| 31 | GO:0051920: peroxiredoxin activity | 2.09E-03 |
| 32 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.09E-03 |
| 33 | GO:0004017: adenylate kinase activity | 2.09E-03 |
| 34 | GO:0019899: enzyme binding | 2.45E-03 |
| 35 | GO:0016209: antioxidant activity | 2.84E-03 |
| 36 | GO:0015078: hydrogen ion transmembrane transporter activity | 3.25E-03 |
| 37 | GO:0015386: potassium:proton antiporter activity | 5.05E-03 |
| 38 | GO:0031072: heat shock protein binding | 6.06E-03 |
| 39 | GO:0004565: beta-galactosidase activity | 6.06E-03 |
| 40 | GO:0015079: potassium ion transmembrane transporter activity | 8.86E-03 |
| 41 | GO:0004176: ATP-dependent peptidase activity | 9.46E-03 |
| 42 | GO:0004707: MAP kinase activity | 9.46E-03 |
| 43 | GO:0022891: substrate-specific transmembrane transporter activity | 1.07E-02 |
| 44 | GO:0003756: protein disulfide isomerase activity | 1.14E-02 |
| 45 | GO:0046872: metal ion binding | 1.36E-02 |
| 46 | GO:0050662: coenzyme binding | 1.41E-02 |
| 47 | GO:0004518: nuclease activity | 1.63E-02 |
| 48 | GO:0016791: phosphatase activity | 1.78E-02 |
| 49 | GO:0016491: oxidoreductase activity | 1.85E-02 |
| 50 | GO:0008483: transaminase activity | 1.86E-02 |
| 51 | GO:0015250: water channel activity | 2.02E-02 |
| 52 | GO:0008168: methyltransferase activity | 2.13E-02 |
| 53 | GO:0004601: peroxidase activity | 2.21E-02 |
| 54 | GO:0016788: hydrolase activity, acting on ester bonds | 2.25E-02 |
| 55 | GO:0004721: phosphoprotein phosphatase activity | 2.27E-02 |
| 56 | GO:0008236: serine-type peptidase activity | 2.36E-02 |
| 57 | GO:0005096: GTPase activator activity | 2.53E-02 |
| 58 | GO:0004222: metalloendopeptidase activity | 2.62E-02 |
| 59 | GO:0030145: manganese ion binding | 2.71E-02 |
| 60 | GO:0003993: acid phosphatase activity | 2.98E-02 |
| 61 | GO:0052689: carboxylic ester hydrolase activity | 3.03E-02 |
| 62 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 3.08E-02 |
| 63 | GO:0004871: signal transducer activity | 3.43E-02 |
| 64 | GO:0004185: serine-type carboxypeptidase activity | 3.46E-02 |
| 65 | GO:0004722: protein serine/threonine phosphatase activity | 3.59E-02 |
| 66 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.66E-02 |
| 67 | GO:0015293: symporter activity | 3.76E-02 |
| 68 | GO:0005509: calcium ion binding | 3.91E-02 |
| 69 | GO:0015171: amino acid transmembrane transporter activity | 4.60E-02 |
| 70 | GO:0031625: ubiquitin protein ligase binding | 4.60E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 2 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 4.23E-32 |
| 4 | GO:0009534: chloroplast thylakoid | 7.62E-31 |
| 5 | GO:0009507: chloroplast | 3.09E-29 |
| 6 | GO:0009941: chloroplast envelope | 2.60E-16 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 2.38E-14 |
| 8 | GO:0009570: chloroplast stroma | 8.62E-14 |
| 9 | GO:0030095: chloroplast photosystem II | 1.16E-13 |
| 10 | GO:0009579: thylakoid | 2.64E-09 |
| 11 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.82E-08 |
| 12 | GO:0009523: photosystem II | 7.44E-08 |
| 13 | GO:0009533: chloroplast stromal thylakoid | 1.04E-06 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 3.19E-05 |
| 15 | GO:0019898: extrinsic component of membrane | 1.00E-04 |
| 16 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.58E-04 |
| 17 | GO:0009782: photosystem I antenna complex | 1.58E-04 |
| 18 | GO:0010287: plastoglobule | 1.95E-04 |
| 19 | GO:0031977: thylakoid lumen | 4.66E-04 |
| 20 | GO:0042651: thylakoid membrane | 6.55E-04 |
| 21 | GO:0009531: secondary cell wall | 8.43E-04 |
| 22 | GO:0005960: glycine cleavage complex | 8.43E-04 |
| 23 | GO:0031969: chloroplast membrane | 9.77E-04 |
| 24 | GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o) | 1.74E-03 |
| 25 | GO:0010319: stromule | 1.81E-03 |
| 26 | GO:0042644: chloroplast nucleoid | 3.67E-03 |
| 27 | GO:0032040: small-subunit processome | 5.55E-03 |
| 28 | GO:0009508: plastid chromosome | 6.06E-03 |
| 29 | GO:0030076: light-harvesting complex | 7.13E-03 |
| 30 | GO:0009706: chloroplast inner membrane | 8.21E-03 |
| 31 | GO:0048046: apoplast | 1.05E-02 |
| 32 | GO:0009522: photosystem I | 1.41E-02 |
| 33 | GO:0009505: plant-type cell wall | 1.72E-02 |
| 34 | GO:0009295: nucleoid | 1.86E-02 |
| 35 | GO:0046658: anchored component of plasma membrane | 1.89E-02 |
| 36 | GO:0016021: integral component of membrane | 3.38E-02 |