co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G02500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043462: regulation of ATPase activity	0.00E+00
2	GO:0009991: response to extracellular stimulus	0.00E+00
3	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
4	GO:1900103: positive regulation of endoplasmic reticulum unfolded protein response	0.00E+00
5	GO:0006858: extracellular transport	0.00E+00
6	GO:0036258: multivesicular body assembly	0.00E+00
7	GO:0071806: protein transmembrane transport	1.12E-04
8	GO:0046167: glycerol-3-phosphate biosynthetic process	1.12E-04
9	GO:0000303: response to superoxide	1.12E-04
10	GO:0034214: protein hexamerization	1.12E-04
11	GO:0010072: primary shoot apical meristem specification	1.78E-04
12	GO:0009867: jasmonic acid mediated signaling pathway	1.97E-04
13	GO:0000266: mitochondrial fission	2.06E-04
14	GO:0034398: telomere tethering at nuclear periphery	2.61E-04
15	GO:0046740: transport of virus in host, cell to cell	2.61E-04
16	GO:0031648: protein destabilization	2.61E-04
17	GO:0071395: cellular response to jasmonic acid stimulus	2.61E-04
18	GO:0006641: triglyceride metabolic process	2.61E-04
19	GO:0030010: establishment of cell polarity	2.61E-04
20	GO:0051258: protein polymerization	2.61E-04
21	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	4.32E-04
22	GO:0019563: glycerol catabolic process	4.32E-04
23	GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery	6.19E-04
24	GO:0070676: intralumenal vesicle formation	6.19E-04
25	GO:0001676: long-chain fatty acid metabolic process	6.19E-04
26	GO:0010071: root meristem specification	6.19E-04
27	GO:1901000: regulation of response to salt stress	6.19E-04
28	GO:0070301: cellular response to hydrogen peroxide	6.19E-04
29	GO:0006072: glycerol-3-phosphate metabolic process	6.19E-04
30	GO:0006809: nitric oxide biosynthetic process	6.19E-04
31	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	8.23E-04
32	GO:0010188: response to microbial phytotoxin	8.23E-04
33	GO:0042991: transcription factor import into nucleus	8.23E-04
34	GO:0006574: valine catabolic process	1.27E-03
35	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.27E-03
36	GO:0070814: hydrogen sulfide biosynthetic process	1.27E-03
37	GO:0048317: seed morphogenesis	1.27E-03
38	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.27E-03
39	GO:1900425: negative regulation of defense response to bacterium	1.27E-03
40	GO:0010555: response to mannitol	1.52E-03
41	GO:2000067: regulation of root morphogenesis	1.52E-03
42	GO:0080060: integument development	1.52E-03
43	GO:0009094: L-phenylalanine biosynthetic process	1.52E-03
44	GO:0009617: response to bacterium	1.58E-03
45	GO:0045995: regulation of embryonic development	1.78E-03
46	GO:0071446: cellular response to salicylic acid stimulus	1.78E-03
47	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	1.78E-03
48	GO:0015937: coenzyme A biosynthetic process	1.78E-03
49	GO:0048527: lateral root development	1.91E-03
50	GO:0010078: maintenance of root meristem identity	2.06E-03
51	GO:0010492: maintenance of shoot apical meristem identity	2.06E-03
52	GO:0006102: isocitrate metabolic process	2.06E-03
53	GO:0016559: peroxisome fission	2.06E-03
54	GO:0015031: protein transport	2.12E-03
55	GO:0030968: endoplasmic reticulum unfolded protein response	2.35E-03
56	GO:0009880: embryonic pattern specification	2.35E-03
57	GO:0007186: G-protein coupled receptor signaling pathway	2.35E-03
58	GO:0006631: fatty acid metabolic process	2.47E-03
59	GO:0009056: catabolic process	2.66E-03
60	GO:0007338: single fertilization	2.66E-03
61	GO:0006098: pentose-phosphate shunt	2.66E-03
62	GO:0090333: regulation of stomatal closure	2.66E-03
63	GO:0008202: steroid metabolic process	2.97E-03
64	GO:0042761: very long-chain fatty acid biosynthetic process	2.97E-03
65	GO:2000280: regulation of root development	2.97E-03
66	GO:0000103: sulfate assimilation	3.30E-03
67	GO:0010629: negative regulation of gene expression	3.30E-03
68	GO:0006896: Golgi to vacuole transport	3.30E-03
69	GO:0019538: protein metabolic process	3.30E-03
70	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.30E-03
71	GO:0009846: pollen germination	3.35E-03
72	GO:0009736: cytokinin-activated signaling pathway	3.59E-03
73	GO:0009750: response to fructose	3.65E-03
74	GO:0072593: reactive oxygen species metabolic process	3.65E-03
75	GO:0051603: proteolysis involved in cellular protein catabolic process	3.72E-03
76	GO:0012501: programmed cell death	4.00E-03
77	GO:0006626: protein targeting to mitochondrion	4.36E-03
78	GO:0055046: microgametogenesis	4.36E-03
79	GO:0010102: lateral root morphogenesis	4.36E-03
80	GO:0007275: multicellular organism development	4.55E-03
81	GO:0009887: animal organ morphogenesis	4.74E-03
82	GO:0002237: response to molecule of bacterial origin	4.74E-03
83	GO:0048364: root development	4.97E-03
84	GO:0006351: transcription, DNA-templated	5.06E-03
85	GO:0010053: root epidermal cell differentiation	5.13E-03
86	GO:0006396: RNA processing	5.25E-03
87	GO:0006406: mRNA export from nucleus	5.93E-03
88	GO:2000377: regulation of reactive oxygen species metabolic process	5.93E-03
89	GO:0030150: protein import into mitochondrial matrix	5.93E-03
90	GO:0009873: ethylene-activated signaling pathway	6.51E-03
91	GO:0061077: chaperone-mediated protein folding	6.78E-03
92	GO:0031408: oxylipin biosynthetic process	6.78E-03
93	GO:0030433: ubiquitin-dependent ERAD pathway	7.22E-03
94	GO:0031348: negative regulation of defense response	7.22E-03
95	GO:0010017: red or far-red light signaling pathway	7.22E-03
96	GO:0009814: defense response, incompatible interaction	7.22E-03
97	GO:0009790: embryo development	7.44E-03
98	GO:0009306: protein secretion	8.13E-03
99	GO:0019722: calcium-mediated signaling	8.13E-03
100	GO:0009561: megagametogenesis	8.13E-03
101	GO:0070417: cellular response to cold	8.60E-03
102	GO:0051028: mRNA transport	8.60E-03
103	GO:0080022: primary root development	9.08E-03
104	GO:0010051: xylem and phloem pattern formation	9.08E-03
105	GO:0006606: protein import into nucleus	9.08E-03
106	GO:0042631: cellular response to water deprivation	9.08E-03
107	GO:0071472: cellular response to salt stress	9.57E-03
108	GO:0010154: fruit development	9.57E-03
109	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	9.85E-03
110	GO:0007166: cell surface receptor signaling pathway	1.01E-02
111	GO:0055072: iron ion homeostasis	1.06E-02
112	GO:0048825: cotyledon development	1.06E-02
113	GO:0009749: response to glucose	1.06E-02
114	GO:0006891: intra-Golgi vesicle-mediated transport	1.11E-02
115	GO:0002229: defense response to oomycetes	1.11E-02
116	GO:0010193: response to ozone	1.11E-02
117	GO:0032502: developmental process	1.16E-02
118	GO:0016032: viral process	1.16E-02
119	GO:0006914: autophagy	1.27E-02
120	GO:0009567: double fertilization forming a zygote and endosperm	1.27E-02
121	GO:0071805: potassium ion transmembrane transport	1.33E-02
122	GO:0006904: vesicle docking involved in exocytosis	1.33E-02
123	GO:0016579: protein deubiquitination	1.38E-02
124	GO:0006511: ubiquitin-dependent protein catabolic process	1.44E-02
125	GO:0009911: positive regulation of flower development	1.44E-02
126	GO:0006970: response to osmotic stress	1.47E-02
127	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.50E-02
128	GO:0009816: defense response to bacterium, incompatible interaction	1.50E-02
129	GO:0009723: response to ethylene	1.58E-02
130	GO:0048366: leaf development	1.61E-02
131	GO:0048573: photoperiodism, flowering	1.62E-02
132	GO:0006950: response to stress	1.62E-02
133	GO:0006888: ER to Golgi vesicle-mediated transport	1.62E-02
134	GO:0080167: response to karrikin	1.69E-02
135	GO:0009817: defense response to fungus, incompatible interaction	1.74E-02
136	GO:0048481: plant ovule development	1.74E-02
137	GO:0010200: response to chitin	1.75E-02
138	GO:0006468: protein phosphorylation	1.77E-02
139	GO:0006355: regulation of transcription, DNA-templated	1.81E-02
140	GO:0046777: protein autophosphorylation	1.81E-02
141	GO:0009910: negative regulation of flower development	1.93E-02
142	GO:0045892: negative regulation of transcription, DNA-templated	2.06E-02
143	GO:0006886: intracellular protein transport	2.10E-02
144	GO:0006099: tricarboxylic acid cycle	2.12E-02
145	GO:0016310: phosphorylation	2.28E-02
146	GO:0006897: endocytosis	2.32E-02
147	GO:0042742: defense response to bacterium	2.38E-02
148	GO:0009744: response to sucrose	2.46E-02
149	GO:0051707: response to other organism	2.46E-02
150	GO:0008283: cell proliferation	2.46E-02
151	GO:0000209: protein polyubiquitination	2.53E-02
152	GO:0006397: mRNA processing	2.61E-02
153	GO:0008152: metabolic process	2.76E-02
154	GO:0031347: regulation of defense response	2.82E-02
155	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.82E-02
156	GO:0006813: potassium ion transport	3.04E-02
157	GO:0048367: shoot system development	3.51E-02
158	GO:0016569: covalent chromatin modification	3.75E-02
159	GO:0051726: regulation of cell cycle	4.08E-02
160	GO:0009742: brassinosteroid mediated signaling pathway	4.08E-02
161	GO:0000398: mRNA splicing, via spliceosome	4.33E-02
162	GO:0009845: seed germination	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0004370: glycerol kinase activity	0.00E+00
2	GO:0005515: protein binding	3.12E-06
3	GO:0004713: protein tyrosine kinase activity	1.52E-04
4	GO:0019200: carbohydrate kinase activity	2.61E-04
5	GO:0004450: isocitrate dehydrogenase (NADP+) activity	2.61E-04
6	GO:0004594: pantothenate kinase activity	2.61E-04
7	GO:0010296: prenylcysteine methylesterase activity	2.61E-04
8	GO:0032934: sterol binding	2.61E-04
9	GO:0043130: ubiquitin binding	3.73E-04
10	GO:0005524: ATP binding	3.84E-04
11	GO:0043424: protein histidine kinase binding	4.13E-04
12	GO:0004781: sulfate adenylyltransferase (ATP) activity	4.32E-04
13	GO:0001664: G-protein coupled receptor binding	4.32E-04
14	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	4.32E-04
15	GO:0031683: G-protein beta/gamma-subunit complex binding	4.32E-04
16	GO:0004416: hydroxyacylglutathione hydrolase activity	6.19E-04
17	GO:0004871: signal transducer activity	6.68E-04
18	GO:0004301: epoxide hydrolase activity	8.23E-04
19	GO:0047769: arogenate dehydratase activity	8.23E-04
20	GO:0004664: prephenate dehydratase activity	8.23E-04
21	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.04E-03
22	GO:0036402: proteasome-activating ATPase activity	1.27E-03
23	GO:0047714: galactolipase activity	1.27E-03
24	GO:0003730: mRNA 3'-UTR binding	1.52E-03
25	GO:0102391: decanoate--CoA ligase activity	1.52E-03
26	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.52E-03
27	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.52E-03
28	GO:0004467: long-chain fatty acid-CoA ligase activity	1.78E-03
29	GO:0004143: diacylglycerol kinase activity	1.78E-03
30	GO:0017056: structural constituent of nuclear pore	2.06E-03
31	GO:0015288: porin activity	2.06E-03
32	GO:0035064: methylated histone binding	2.06E-03
33	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.27E-03
34	GO:0003951: NAD+ kinase activity	2.35E-03
35	GO:0008142: oxysterol binding	2.35E-03
36	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	2.35E-03
37	GO:0005487: nucleocytoplasmic transporter activity	2.97E-03
38	GO:0051287: NAD binding	3.23E-03
39	GO:0008794: arsenate reductase (glutaredoxin) activity	3.65E-03
40	GO:0042803: protein homodimerization activity	3.83E-03
41	GO:0008139: nuclear localization sequence binding	4.36E-03
42	GO:0031072: heat shock protein binding	4.36E-03
43	GO:0005388: calcium-transporting ATPase activity	4.36E-03
44	GO:0015266: protein channel activity	4.36E-03
45	GO:0003924: GTPase activity	4.71E-03
46	GO:0017025: TBP-class protein binding	5.13E-03
47	GO:0005528: FK506 binding	5.93E-03
48	GO:0015079: potassium ion transmembrane transporter activity	6.35E-03
49	GO:0019706: protein-cysteine S-palmitoyltransferase activity	6.78E-03
50	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	6.78E-03
51	GO:0004298: threonine-type endopeptidase activity	6.78E-03
52	GO:0004674: protein serine/threonine kinase activity	7.40E-03
53	GO:0008565: protein transporter activity	7.62E-03
54	GO:0016887: ATPase activity	8.21E-03
55	GO:0008194: UDP-glycosyltransferase activity	9.85E-03
56	GO:0003729: mRNA binding	1.08E-02
57	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.11E-02
58	GO:0016597: amino acid binding	1.38E-02
59	GO:0051213: dioxygenase activity	1.44E-02
60	GO:0004806: triglyceride lipase activity	1.62E-02
61	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.74E-02
62	GO:0003723: RNA binding	1.80E-02
63	GO:0016787: hydrolase activity	1.86E-02
64	GO:0043621: protein self-association	2.60E-02
65	GO:0035091: phosphatidylinositol binding	2.60E-02
66	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.75E-02
67	GO:0051082: unfolded protein binding	3.91E-02
68	GO:0015035: protein disulfide oxidoreductase activity	3.99E-02
69	GO:0000166: nucleotide binding	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	2.62E-04
2	GO:0044614: nuclear pore cytoplasmic filaments	4.32E-04
3	GO:0005829: cytosol	5.10E-04
4	GO:0005834: heterotrimeric G-protein complex	5.53E-04
5	GO:0000813: ESCRT I complex	1.04E-03
6	GO:0030127: COPII vesicle coat	1.27E-03
7	GO:0030529: intracellular ribonucleoprotein complex	1.28E-03
8	GO:0031597: cytosolic proteasome complex	1.52E-03
9	GO:0016363: nuclear matrix	1.52E-03
10	GO:0031595: nuclear proteasome complex	1.78E-03
11	GO:0031305: integral component of mitochondrial inner membrane	2.06E-03
12	GO:0008540: proteasome regulatory particle, base subcomplex	2.97E-03
13	GO:0000502: proteasome complex	3.59E-03
14	GO:0005635: nuclear envelope	3.84E-03
15	GO:0005634: nucleus	4.86E-03
16	GO:0005795: Golgi stack	5.13E-03
17	GO:0009524: phragmoplast	6.72E-03
18	GO:0005741: mitochondrial outer membrane	6.78E-03
19	GO:0005839: proteasome core complex	6.78E-03
20	GO:0009506: plasmodesma	7.59E-03
21	GO:0005744: mitochondrial inner membrane presequence translocase complex	8.13E-03
22	GO:0030136: clathrin-coated vesicle	8.60E-03
23	GO:0031965: nuclear membrane	1.06E-02
24	GO:0005778: peroxisomal membrane	1.33E-02
25	GO:0000932: P-body	1.44E-02
26	GO:0005819: spindle	2.19E-02
27	GO:0031902: late endosome membrane	2.32E-02
28	GO:0005773: vacuole	2.52E-02
29	GO:0005794: Golgi apparatus	3.62E-02
30	GO:0005774: vacuolar membrane	3.77E-02
31	GO:0005783: endoplasmic reticulum	3.97E-02
32	GO:0005789: endoplasmic reticulum membrane	4.03E-02