co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G01790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
3	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.17E-06
4	GO:0000305: response to oxygen radical	4.45E-05
5	GO:0015969: guanosine tetraphosphate metabolic process	4.45E-05
6	GO:0009773: photosynthetic electron transport in photosystem I	4.59E-05
7	GO:0045454: cell redox homeostasis	8.17E-05
8	GO:0090342: regulation of cell aging	1.10E-04
9	GO:0016050: vesicle organization	1.89E-04
10	GO:1901332: negative regulation of lateral root development	2.78E-04
11	GO:0045727: positive regulation of translation	3.73E-04
12	GO:0051205: protein insertion into membrane	3.73E-04
13	GO:0006749: glutathione metabolic process	3.73E-04
14	GO:0010027: thylakoid membrane organization	3.99E-04
15	GO:0045038: protein import into chloroplast thylakoid membrane	4.75E-04
16	GO:0006596: polyamine biosynthetic process	5.82E-04
17	GO:0048759: xylem vessel member cell differentiation	5.82E-04
18	GO:0042549: photosystem II stabilization	5.82E-04
19	GO:0010256: endomembrane system organization	5.82E-04
20	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	5.82E-04
21	GO:0009228: thiamine biosynthetic process	5.82E-04
22	GO:0009913: epidermal cell differentiation	5.82E-04
23	GO:0015979: photosynthesis	7.40E-04
24	GO:0009772: photosynthetic electron transport in photosystem II	8.11E-04
25	GO:0005978: glycogen biosynthetic process	9.32E-04
26	GO:0032544: plastid translation	1.06E-03
27	GO:0071482: cellular response to light stimulus	1.06E-03
28	GO:0010205: photoinhibition	1.32E-03
29	GO:0018105: peptidyl-serine phosphorylation	1.58E-03
30	GO:0018107: peptidyl-threonine phosphorylation	1.92E-03
31	GO:0006094: gluconeogenesis	1.92E-03
32	GO:0010102: lateral root morphogenesis	1.92E-03
33	GO:0016114: terpenoid biosynthetic process	2.96E-03
34	GO:0061077: chaperone-mediated protein folding	2.96E-03
35	GO:0009686: gibberellin biosynthetic process	3.33E-03
36	GO:0010087: phloem or xylem histogenesis	3.93E-03
37	GO:0010268: brassinosteroid homeostasis	4.14E-03
38	GO:0006814: sodium ion transport	4.35E-03
39	GO:0048825: cotyledon development	4.56E-03
40	GO:0019252: starch biosynthetic process	4.56E-03
41	GO:0016132: brassinosteroid biosynthetic process	4.77E-03
42	GO:0010193: response to ozone	4.77E-03
43	GO:0016125: sterol metabolic process	5.45E-03
44	GO:0015995: chlorophyll biosynthetic process	6.89E-03
45	GO:0009817: defense response to fungus, incompatible interaction	7.39E-03
46	GO:0010311: lateral root formation	7.65E-03
47	GO:0055114: oxidation-reduction process	8.10E-03
48	GO:0008152: metabolic process	8.13E-03
49	GO:0006810: transport	8.23E-03
50	GO:0009926: auxin polar transport	1.04E-02
51	GO:0006364: rRNA processing	1.28E-02
52	GO:0009416: response to light stimulus	1.31E-02
53	GO:0010224: response to UV-B	1.32E-02
54	GO:0035556: intracellular signal transduction	1.39E-02
55	GO:0006096: glycolytic process	1.45E-02
56	GO:0016310: phosphorylation	1.58E-02
57	GO:0009624: response to nematode	1.65E-02
58	GO:0055085: transmembrane transport	1.67E-02
59	GO:0009845: seed germination	2.05E-02
60	GO:0042744: hydrogen peroxide catabolic process	2.12E-02
61	GO:0007623: circadian rhythm	2.43E-02
62	GO:0009733: response to auxin	2.99E-02
63	GO:0009826: unidimensional cell growth	3.23E-02
64	GO:0005975: carbohydrate metabolic process	4.03E-02
65	GO:0046777: protein autophosphorylation	4.06E-02
66	GO:0045892: negative regulation of transcription, DNA-templated	4.45E-02
67	GO:0006869: lipid transport	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
3	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
4	GO:0010487: thermospermine synthase activity	0.00E+00
5	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
6	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.26E-06
7	GO:0004856: xylulokinase activity	4.45E-05
8	GO:0016768: spermine synthase activity	4.45E-05
9	GO:0051777: ent-kaurenoate oxidase activity	4.45E-05
10	GO:0008728: GTP diphosphokinase activity	1.10E-04
11	GO:0004362: glutathione-disulfide reductase activity	1.10E-04
12	GO:0016868: intramolecular transferase activity, phosphotransferases	1.10E-04
13	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	1.10E-04
14	GO:0004148: dihydrolipoyl dehydrogenase activity	1.89E-04
15	GO:0048038: quinone binding	2.76E-04
16	GO:0019201: nucleotide kinase activity	2.78E-04
17	GO:0008878: glucose-1-phosphate adenylyltransferase activity	3.73E-04
18	GO:0016773: phosphotransferase activity, alcohol group as acceptor	4.75E-04
19	GO:0004332: fructose-bisphosphate aldolase activity	5.82E-04
20	GO:0004017: adenylate kinase activity	6.94E-04
21	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	6.94E-04
22	GO:0005315: inorganic phosphate transmembrane transporter activity	1.92E-03
23	GO:0008266: poly(U) RNA binding	2.09E-03
24	GO:0003954: NADH dehydrogenase activity	2.60E-03
25	GO:0005528: FK506 binding	2.60E-03
26	GO:0008514: organic anion transmembrane transporter activity	3.53E-03
27	GO:0005515: protein binding	4.30E-03
28	GO:0050662: coenzyme binding	4.35E-03
29	GO:0050660: flavin adenine dinucleotide binding	4.67E-03
30	GO:0009931: calcium-dependent protein serine/threonine kinase activity	6.64E-03
31	GO:0004683: calmodulin-dependent protein kinase activity	6.89E-03
32	GO:0016301: kinase activity	7.10E-03
33	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.39E-03
34	GO:0050897: cobalt ion binding	8.18E-03
35	GO:0030145: manganese ion binding	8.18E-03
36	GO:0003746: translation elongation factor activity	8.71E-03
37	GO:0050661: NADP binding	9.55E-03
38	GO:0008289: lipid binding	1.03E-02
39	GO:0015293: symporter activity	1.13E-02
40	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.16E-02
41	GO:0005507: copper ion binding	1.87E-02
42	GO:0019843: rRNA binding	1.93E-02
43	GO:0005525: GTP binding	2.16E-02
44	GO:0015144: carbohydrate transmembrane transporter activity	2.20E-02
45	GO:0005351: sugar:proton symporter activity	2.39E-02
46	GO:0005509: calcium ion binding	2.46E-02
47	GO:0005524: ATP binding	2.83E-02
48	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.88E-02
49	GO:0042802: identical protein binding	2.88E-02
50	GO:0003824: catalytic activity	2.92E-02
51	GO:0004601: peroxidase activity	3.32E-02
52	GO:0016491: oxidoreductase activity	3.50E-02
53	GO:0020037: heme binding	4.19E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009507: chloroplast	1.38E-19
3	GO:0009535: chloroplast thylakoid membrane	6.50E-16
4	GO:0009534: chloroplast thylakoid	2.04E-13
5	GO:0009941: chloroplast envelope	4.82E-11
6	GO:0009570: chloroplast stroma	7.29E-07
7	GO:0009579: thylakoid	3.30E-06
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.58E-05
9	GO:0009508: plastid chromosome	6.27E-05
10	GO:0030095: chloroplast photosystem II	7.22E-05
11	GO:0031304: intrinsic component of mitochondrial inner membrane	1.10E-04
12	GO:0009295: nucleoid	3.55E-04
13	GO:0009533: chloroplast stromal thylakoid	8.11E-04
14	GO:0009538: photosystem I reaction center	9.32E-04
15	GO:0042644: chloroplast nucleoid	1.19E-03
16	GO:0009543: chloroplast thylakoid lumen	1.92E-03
17	GO:0042651: thylakoid membrane	2.77E-03
18	GO:0009523: photosystem II	4.56E-03
19	GO:0005747: mitochondrial respiratory chain complex I	1.48E-02
20	GO:0009706: chloroplast inner membrane	1.65E-02
21	GO:0010287: plastoglobule	1.86E-02
22	GO:0005759: mitochondrial matrix	2.27E-02
23	GO:0009705: plant-type vacuole membrane	2.43E-02
24	GO:0048046: apoplast	2.59E-02
25	GO:0016021: integral component of membrane	3.61E-02
26	GO:0031969: chloroplast membrane	3.87E-02