Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G01090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901698: response to nitrogen compound0.00E+00
2GO:0061635: regulation of protein complex stability0.00E+00
3GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
4GO:0000372: Group I intron splicing0.00E+00
5GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
6GO:0006399: tRNA metabolic process0.00E+00
7GO:0006429: leucyl-tRNA aminoacylation0.00E+00
8GO:1900000: regulation of anthocyanin catabolic process0.00E+00
9GO:0090706: specification of plant organ position0.00E+00
10GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
11GO:0032544: plastid translation2.11E-05
12GO:0070509: calcium ion import3.86E-04
13GO:0007263: nitric oxide mediated signal transduction3.86E-04
14GO:0043953: protein transport by the Tat complex3.86E-04
15GO:0043266: regulation of potassium ion transport3.86E-04
16GO:0010480: microsporocyte differentiation3.86E-04
17GO:0006723: cuticle hydrocarbon biosynthetic process3.86E-04
18GO:0000481: maturation of 5S rRNA3.86E-04
19GO:0042547: cell wall modification involved in multidimensional cell growth3.86E-04
20GO:0065002: intracellular protein transmembrane transport3.86E-04
21GO:2000021: regulation of ion homeostasis3.86E-04
22GO:0034628: 'de novo' NAD biosynthetic process from aspartate3.86E-04
23GO:0034337: RNA folding3.86E-04
24GO:0010450: inflorescence meristem growth3.86E-04
25GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.86E-04
26GO:0016119: carotene metabolic process3.86E-04
27GO:0000476: maturation of 4.5S rRNA3.86E-04
28GO:0000967: rRNA 5'-end processing3.86E-04
29GO:0009735: response to cytokinin6.42E-04
30GO:0000373: Group II intron splicing6.44E-04
31GO:0045717: negative regulation of fatty acid biosynthetic process8.38E-04
32GO:0034755: iron ion transmembrane transport8.38E-04
33GO:0080151: positive regulation of salicylic acid mediated signaling pathway8.38E-04
34GO:0030388: fructose 1,6-bisphosphate metabolic process8.38E-04
35GO:0010270: photosystem II oxygen evolving complex assembly8.38E-04
36GO:0034470: ncRNA processing8.38E-04
37GO:0006695: cholesterol biosynthetic process8.38E-04
38GO:0016560: protein import into peroxisome matrix, docking8.38E-04
39GO:0010027: thylakoid membrane organization9.96E-04
40GO:0009773: photosynthetic electron transport in photosystem I1.02E-03
41GO:0015995: chlorophyll biosynthetic process1.22E-03
42GO:0009767: photosynthetic electron transport chain1.32E-03
43GO:0006954: inflammatory response1.36E-03
44GO:0006000: fructose metabolic process1.36E-03
45GO:0043447: alkane biosynthetic process1.36E-03
46GO:0006013: mannose metabolic process1.36E-03
47GO:0071705: nitrogen compound transport1.36E-03
48GO:0051176: positive regulation of sulfur metabolic process1.36E-03
49GO:2001295: malonyl-CoA biosynthetic process1.36E-03
50GO:0045165: cell fate commitment1.36E-03
51GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement1.36E-03
52GO:0010207: photosystem II assembly1.48E-03
53GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.80E-03
54GO:0010025: wax biosynthetic process1.85E-03
55GO:0016556: mRNA modification1.96E-03
56GO:0055070: copper ion homeostasis1.96E-03
57GO:2001141: regulation of RNA biosynthetic process1.96E-03
58GO:0006515: misfolded or incompletely synthesized protein catabolic process1.96E-03
59GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.96E-03
60GO:0034059: response to anoxia1.96E-03
61GO:0009226: nucleotide-sugar biosynthetic process1.96E-03
62GO:0015979: photosynthesis2.14E-03
63GO:0006418: tRNA aminoacylation for protein translation2.27E-03
64GO:0006546: glycine catabolic process2.63E-03
65GO:0006808: regulation of nitrogen utilization2.63E-03
66GO:0071249: cellular response to nitrate2.63E-03
67GO:0045727: positive regulation of translation2.63E-03
68GO:0015994: chlorophyll metabolic process2.63E-03
69GO:0016226: iron-sulfur cluster assembly2.73E-03
70GO:0009644: response to high light intensity2.87E-03
71GO:0032543: mitochondrial translation3.37E-03
72GO:0006564: L-serine biosynthetic process3.37E-03
73GO:0045038: protein import into chloroplast thylakoid membrane3.37E-03
74GO:0035434: copper ion transmembrane transport3.37E-03
75GO:0006461: protein complex assembly3.37E-03
76GO:1902183: regulation of shoot apical meristem development3.37E-03
77GO:0016123: xanthophyll biosynthetic process3.37E-03
78GO:0009435: NAD biosynthetic process3.37E-03
79GO:0010158: abaxial cell fate specification3.37E-03
80GO:0009247: glycolipid biosynthetic process3.37E-03
81GO:0042631: cellular response to water deprivation3.79E-03
82GO:0008152: metabolic process4.00E-03
83GO:0016554: cytidine to uridine editing4.17E-03
84GO:0010190: cytochrome b6f complex assembly4.17E-03
85GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.17E-03
86GO:0006828: manganese ion transport4.17E-03
87GO:0000741: karyogamy4.17E-03
88GO:0006354: DNA-templated transcription, elongation4.17E-03
89GO:0006751: glutathione catabolic process4.17E-03
90GO:0042549: photosystem II stabilization4.17E-03
91GO:0000470: maturation of LSU-rRNA4.17E-03
92GO:0006412: translation4.96E-03
93GO:0010067: procambium histogenesis5.02E-03
94GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.02E-03
95GO:0006694: steroid biosynthetic process5.02E-03
96GO:0010019: chloroplast-nucleus signaling pathway5.02E-03
97GO:0048437: floral organ development5.94E-03
98GO:1900057: positive regulation of leaf senescence5.94E-03
99GO:0009645: response to low light intensity stimulus5.94E-03
100GO:0050829: defense response to Gram-negative bacterium5.94E-03
101GO:0051510: regulation of unidimensional cell growth5.94E-03
102GO:0009610: response to symbiotic fungus5.94E-03
103GO:0008610: lipid biosynthetic process6.90E-03
104GO:0009850: auxin metabolic process6.90E-03
105GO:0009690: cytokinin metabolic process6.90E-03
106GO:0019375: galactolipid biosynthetic process6.90E-03
107GO:0032508: DNA duplex unwinding6.90E-03
108GO:0006402: mRNA catabolic process6.90E-03
109GO:0009657: plastid organization7.92E-03
110GO:0009808: lignin metabolic process7.92E-03
111GO:0010093: specification of floral organ identity7.92E-03
112GO:0006002: fructose 6-phosphate metabolic process7.92E-03
113GO:0071482: cellular response to light stimulus7.92E-03
114GO:0010206: photosystem II repair8.99E-03
115GO:2000024: regulation of leaf development8.99E-03
116GO:0045337: farnesyl diphosphate biosynthetic process8.99E-03
117GO:0033384: geranyl diphosphate biosynthetic process8.99E-03
118GO:0009060: aerobic respiration8.99E-03
119GO:0046685: response to arsenic-containing substance8.99E-03
120GO:0018298: protein-chromophore linkage9.56E-03
121GO:1900865: chloroplast RNA modification1.01E-02
122GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process1.01E-02
123GO:0010205: photoinhibition1.01E-02
124GO:0006779: porphyrin-containing compound biosynthetic process1.01E-02
125GO:0042761: very long-chain fatty acid biosynthetic process1.01E-02
126GO:0006633: fatty acid biosynthetic process1.06E-02
127GO:0006782: protoporphyrinogen IX biosynthetic process1.13E-02
128GO:0009073: aromatic amino acid family biosynthetic process1.25E-02
129GO:0043085: positive regulation of catalytic activity1.25E-02
130GO:0006879: cellular iron ion homeostasis1.25E-02
131GO:0006352: DNA-templated transcription, initiation1.25E-02
132GO:0009750: response to fructose1.25E-02
133GO:0048229: gametophyte development1.25E-02
134GO:0016485: protein processing1.25E-02
135GO:0006816: calcium ion transport1.25E-02
136GO:0005983: starch catabolic process1.38E-02
137GO:0015706: nitrate transport1.38E-02
138GO:0030001: metal ion transport1.39E-02
139GO:0007166: cell surface receptor signaling pathway1.42E-02
140GO:2000028: regulation of photoperiodism, flowering1.51E-02
141GO:0018107: peptidyl-threonine phosphorylation1.51E-02
142GO:0009718: anthocyanin-containing compound biosynthetic process1.51E-02
143GO:0010075: regulation of meristem growth1.51E-02
144GO:0006094: gluconeogenesis1.51E-02
145GO:0005986: sucrose biosynthetic process1.51E-02
146GO:0006468: protein phosphorylation1.51E-02
147GO:0030048: actin filament-based movement1.51E-02
148GO:0051707: response to other organism1.57E-02
149GO:0009933: meristem structural organization1.64E-02
150GO:0010223: secondary shoot formation1.64E-02
151GO:0009934: regulation of meristem structural organization1.64E-02
152GO:0010167: response to nitrate1.78E-02
153GO:0010030: positive regulation of seed germination1.78E-02
154GO:0006636: unsaturated fatty acid biosynthetic process1.92E-02
155GO:0009944: polarity specification of adaxial/abaxial axis2.07E-02
156GO:0009658: chloroplast organization2.09E-02
157GO:0006364: rRNA processing2.12E-02
158GO:0009793: embryo development ending in seed dormancy2.19E-02
159GO:0009768: photosynthesis, light harvesting in photosystem I2.22E-02
160GO:0007017: microtubule-based process2.22E-02
161GO:0061077: chaperone-mediated protein folding2.37E-02
162GO:0005975: carbohydrate metabolic process2.41E-02
163GO:0009814: defense response, incompatible interaction2.53E-02
164GO:0009626: plant-type hypersensitive response2.67E-02
165GO:0040007: growth2.69E-02
166GO:0001944: vasculature development2.69E-02
167GO:0009561: megagametogenesis2.86E-02
168GO:0010089: xylem development2.86E-02
169GO:0009416: response to light stimulus2.96E-02
170GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.03E-02
171GO:0042335: cuticle development3.20E-02
172GO:0042391: regulation of membrane potential3.20E-02
173GO:0000413: protein peptidyl-prolyl isomerization3.20E-02
174GO:0048653: anther development3.20E-02
175GO:0010154: fruit development3.38E-02
176GO:0010197: polar nucleus fusion3.38E-02
177GO:0009741: response to brassinosteroid3.38E-02
178GO:0007018: microtubule-based movement3.55E-02
179GO:0009791: post-embryonic development3.74E-02
180GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.92E-02
181GO:0000302: response to reactive oxygen species3.92E-02
182GO:0002229: defense response to oomycetes3.92E-02
183GO:0016132: brassinosteroid biosynthetic process3.92E-02
184GO:0016032: viral process4.11E-02
185GO:0048235: pollen sperm cell differentiation4.11E-02
186GO:0010583: response to cyclopentenone4.11E-02
187GO:0042744: hydrogen peroxide catabolic process4.29E-02
188GO:0030163: protein catabolic process4.30E-02
189GO:0009567: double fertilization forming a zygote and endosperm4.49E-02
190GO:0071805: potassium ion transmembrane transport4.69E-02
RankGO TermAdjusted P value
1GO:0008987: quinolinate synthetase A activity0.00E+00
2GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
3GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
4GO:0004822: isoleucine-tRNA ligase activity0.00E+00
5GO:0004823: leucine-tRNA ligase activity0.00E+00
6GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
7GO:1990534: thermospermine oxidase activity0.00E+00
8GO:0050614: delta24-sterol reductase activity0.00E+00
9GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
10GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
11GO:0019843: rRNA binding6.81E-10
12GO:0005528: FK506 binding4.04E-09
13GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.27E-08
14GO:0016787: hydrolase activity5.89E-06
15GO:0002161: aminoacyl-tRNA editing activity2.33E-05
16GO:0080062: cytokinin 9-beta-glucosyltransferase activity3.86E-04
17GO:0045485: omega-6 fatty acid desaturase activity3.86E-04
18GO:0005221: intracellular cyclic nucleotide activated cation channel activity3.86E-04
19GO:0046906: tetrapyrrole binding3.86E-04
20GO:0047807: cytokinin 7-beta-glucosyltransferase activity3.86E-04
21GO:0052638: indole-3-butyrate beta-glucosyltransferase activity3.86E-04
22GO:0003735: structural constituent of ribosome8.25E-04
23GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.38E-04
24GO:0015929: hexosaminidase activity8.38E-04
25GO:0004563: beta-N-acetylhexosaminidase activity8.38E-04
26GO:0010291: carotene beta-ring hydroxylase activity8.38E-04
27GO:0047746: chlorophyllase activity8.38E-04
28GO:0016868: intramolecular transferase activity, phosphotransferases8.38E-04
29GO:0003839: gamma-glutamylcyclotransferase activity8.38E-04
30GO:0009977: proton motive force dependent protein transmembrane transporter activity8.38E-04
31GO:0004617: phosphoglycerate dehydrogenase activity8.38E-04
32GO:0004047: aminomethyltransferase activity8.38E-04
33GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity8.38E-04
34GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.38E-04
35GO:0019829: cation-transporting ATPase activity1.36E-03
36GO:0017150: tRNA dihydrouridine synthase activity1.36E-03
37GO:0008253: 5'-nucleotidase activity1.36E-03
38GO:0004148: dihydrolipoyl dehydrogenase activity1.36E-03
39GO:0004075: biotin carboxylase activity1.36E-03
40GO:0030267: glyoxylate reductase (NADP) activity1.36E-03
41GO:0016531: copper chaperone activity1.36E-03
42GO:0008266: poly(U) RNA binding1.48E-03
43GO:0035250: UDP-galactosyltransferase activity1.96E-03
44GO:0001872: (1->3)-beta-D-glucan binding1.96E-03
45GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.96E-03
46GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.32E-03
47GO:0001053: plastid sigma factor activity2.63E-03
48GO:0016836: hydro-lyase activity2.63E-03
49GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.63E-03
50GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.63E-03
51GO:0016987: sigma factor activity2.63E-03
52GO:0003989: acetyl-CoA carboxylase activity3.37E-03
53GO:0004812: aminoacyl-tRNA ligase activity3.51E-03
54GO:0004130: cytochrome-c peroxidase activity4.17E-03
55GO:0042578: phosphoric ester hydrolase activity4.17E-03
56GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.02E-03
57GO:0005261: cation channel activity5.02E-03
58GO:0004559: alpha-mannosidase activity5.02E-03
59GO:0005242: inward rectifier potassium channel activity5.02E-03
60GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.02E-03
61GO:0019899: enzyme binding5.94E-03
62GO:0016491: oxidoreductase activity6.65E-03
63GO:0004033: aldo-keto reductase (NADP) activity6.90E-03
64GO:0003723: RNA binding7.21E-03
65GO:0016168: chlorophyll binding7.73E-03
66GO:0005375: copper ion transmembrane transporter activity7.92E-03
67GO:0004672: protein kinase activity8.40E-03
68GO:0004337: geranyltranstransferase activity8.99E-03
69GO:0004252: serine-type endopeptidase activity9.07E-03
70GO:0008236: serine-type peptidase activity9.08E-03
71GO:0005384: manganese ion transmembrane transporter activity1.01E-02
72GO:0005381: iron ion transmembrane transporter activity1.01E-02
73GO:0008047: enzyme activator activity1.13E-02
74GO:0004161: dimethylallyltranstransferase activity1.25E-02
75GO:0046872: metal ion binding1.29E-02
76GO:0008194: UDP-glycosyltransferase activity1.38E-02
77GO:0000049: tRNA binding1.38E-02
78GO:0004519: endonuclease activity1.43E-02
79GO:0004565: beta-galactosidase activity1.51E-02
80GO:0004022: alcohol dehydrogenase (NAD) activity1.51E-02
81GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.51E-02
82GO:0015095: magnesium ion transmembrane transporter activity1.51E-02
83GO:0031072: heat shock protein binding1.51E-02
84GO:0005262: calcium channel activity1.51E-02
85GO:0008131: primary amine oxidase activity1.64E-02
86GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.64E-02
87GO:0003774: motor activity1.64E-02
88GO:0030552: cAMP binding1.78E-02
89GO:0030553: cGMP binding1.78E-02
90GO:0031409: pigment binding1.92E-02
91GO:0051536: iron-sulfur cluster binding2.07E-02
92GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.12E-02
93GO:0004674: protein serine/threonine kinase activity2.19E-02
94GO:0015079: potassium ion transmembrane transporter activity2.22E-02
95GO:0005216: ion channel activity2.22E-02
96GO:0004176: ATP-dependent peptidase activity2.37E-02
97GO:0033612: receptor serine/threonine kinase binding2.37E-02
98GO:0019706: protein-cysteine S-palmitoyltransferase activity2.37E-02
99GO:0050660: flavin adenine dinucleotide binding2.51E-02
100GO:0022891: substrate-specific transmembrane transporter activity2.69E-02
101GO:0030570: pectate lyase activity2.69E-02
102GO:0080043: quercetin 3-O-glucosyltransferase activity2.76E-02
103GO:0080044: quercetin 7-O-glucosyltransferase activity2.76E-02
104GO:0030551: cyclic nucleotide binding3.20E-02
105GO:0050662: coenzyme binding3.55E-02
106GO:0003824: catalytic activity3.58E-02
107GO:0048038: quinone binding3.92E-02
108GO:0016829: lyase activity4.08E-02
109GO:0000156: phosphorelay response regulator activity4.30E-02
110GO:0008483: transaminase activity4.69E-02
111GO:0005200: structural constituent of cytoskeleton4.69E-02
112GO:0016597: amino acid binding4.89E-02
RankGO TermAdjusted P value
1GO:0043233: organelle lumen0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0043235: receptor complex0.00E+00
4GO:0009507: chloroplast3.76E-36
5GO:0009570: chloroplast stroma2.35E-26
6GO:0009941: chloroplast envelope1.67E-18
7GO:0009535: chloroplast thylakoid membrane1.32E-17
8GO:0009534: chloroplast thylakoid3.94E-17
9GO:0009543: chloroplast thylakoid lumen4.36E-17
10GO:0009579: thylakoid2.63E-09
11GO:0031977: thylakoid lumen4.73E-09
12GO:0009533: chloroplast stromal thylakoid3.51E-04
13GO:0000428: DNA-directed RNA polymerase complex3.86E-04
14GO:0009344: nitrite reductase complex [NAD(P)H]3.86E-04
15GO:0009547: plastid ribosome3.86E-04
16GO:0031361: integral component of thylakoid membrane3.86E-04
17GO:0009782: photosystem I antenna complex3.86E-04
18GO:0005840: ribosome4.27E-04
19GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.44E-04
20GO:0080085: signal recognition particle, chloroplast targeting8.38E-04
21GO:0030529: intracellular ribonucleoprotein complex9.96E-04
22GO:0000311: plastid large ribosomal subunit1.16E-03
23GO:0033281: TAT protein transport complex1.36E-03
24GO:0005782: peroxisomal matrix1.36E-03
25GO:0000312: plastid small ribosomal subunit1.48E-03
26GO:0030095: chloroplast photosystem II1.48E-03
27GO:0031969: chloroplast membrane1.70E-03
28GO:0009654: photosystem II oxygen evolving complex2.27E-03
29GO:0046658: anchored component of plasma membrane3.96E-03
30GO:0043231: intracellular membrane-bounded organelle4.00E-03
31GO:0009523: photosystem II4.71E-03
32GO:0019898: extrinsic component of membrane4.71E-03
33GO:0009706: chloroplast inner membrane5.96E-03
34GO:0009505: plant-type cell wall5.98E-03
35GO:0010287: plastoglobule7.41E-03
36GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.92E-03
37GO:0045298: tubulin complex8.99E-03
38GO:0008180: COP9 signalosome8.99E-03
39GO:0015934: large ribosomal subunit1.11E-02
40GO:0016459: myosin complex1.13E-02
41GO:0032040: small-subunit processome1.38E-02
42GO:0030659: cytoplasmic vesicle membrane1.64E-02
43GO:0030076: light-harvesting complex1.78E-02
44GO:0005886: plasma membrane2.14E-02
45GO:0042651: thylakoid membrane2.22E-02
46GO:0009532: plastid stroma2.37E-02
47GO:0005871: kinesin complex3.03E-02
48GO:0016020: membrane3.11E-02
49GO:0071944: cell periphery4.30E-02
50GO:0009295: nucleoid4.69E-02
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Gene type



Gene DE type