co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G67385

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071000: response to magnetism	0.00E+00
2	GO:0046460: neutral lipid biosynthetic process	0.00E+00
3	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
4	GO:0009583: detection of light stimulus	0.00E+00
5	GO:0090470: shoot organ boundary specification	0.00E+00
6	GO:0097164: ammonium ion metabolic process	0.00E+00
7	GO:0010343: singlet oxygen-mediated programmed cell death	7.96E-07
8	GO:0009903: chloroplast avoidance movement	4.63E-05
9	GO:0022900: electron transport chain	1.02E-04
10	GO:0072387: flavin adenine dinucleotide metabolic process	1.25E-04
11	GO:0071454: cellular response to anoxia	1.25E-04
12	GO:0071461: cellular response to redox state	1.25E-04
13	GO:1902265: abscisic acid homeostasis	1.25E-04
14	GO:0009637: response to blue light	2.44E-04
15	GO:0080005: photosystem stoichiometry adjustment	2.90E-04
16	GO:0010617: circadian regulation of calcium ion oscillation	2.90E-04
17	GO:0070981: L-asparagine biosynthetic process	2.90E-04
18	GO:0007154: cell communication	2.90E-04
19	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.90E-04
20	GO:0099402: plant organ development	2.90E-04
21	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	2.90E-04
22	GO:0006529: asparagine biosynthetic process	2.90E-04
23	GO:0080153: negative regulation of reductive pentose-phosphate cycle	2.90E-04
24	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.90E-04
25	GO:1901529: positive regulation of anion channel activity	2.90E-04
26	GO:0048255: mRNA stabilization	2.90E-04
27	GO:0009150: purine ribonucleotide metabolic process	4.78E-04
28	GO:0071492: cellular response to UV-A	4.78E-04
29	GO:0006696: ergosterol biosynthetic process	4.78E-04
30	GO:0044375: regulation of peroxisome size	4.78E-04
31	GO:0031022: nuclear migration along microfilament	4.78E-04
32	GO:1902448: positive regulation of shade avoidance	4.78E-04
33	GO:1901672: positive regulation of systemic acquired resistance	4.78E-04
34	GO:0033014: tetrapyrrole biosynthetic process	6.85E-04
35	GO:0009113: purine nucleobase biosynthetic process	6.85E-04
36	GO:1901332: negative regulation of lateral root development	6.85E-04
37	GO:0006882: cellular zinc ion homeostasis	6.85E-04
38	GO:2001141: regulation of RNA biosynthetic process	6.85E-04
39	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.85E-04
40	GO:0010371: regulation of gibberellin biosynthetic process	6.85E-04
41	GO:0016117: carotenoid biosynthetic process	7.35E-04
42	GO:1902347: response to strigolactone	9.08E-04
43	GO:0009902: chloroplast relocation	9.08E-04
44	GO:0071486: cellular response to high light intensity	9.08E-04
45	GO:0009765: photosynthesis, light harvesting	9.08E-04
46	GO:0009646: response to absence of light	9.12E-04
47	GO:0010117: photoprotection	1.15E-03
48	GO:0046283: anthocyanin-containing compound metabolic process	1.15E-03
49	GO:0009904: chloroplast accumulation movement	1.15E-03
50	GO:0016120: carotene biosynthetic process	1.15E-03
51	GO:0000304: response to singlet oxygen	1.15E-03
52	GO:0060918: auxin transport	1.41E-03
53	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.41E-03
54	GO:1901371: regulation of leaf morphogenesis	1.41E-03
55	GO:0010019: chloroplast-nucleus signaling pathway	1.68E-03
56	GO:0010310: regulation of hydrogen peroxide metabolic process	1.68E-03
57	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.68E-03
58	GO:0034389: lipid particle organization	1.68E-03
59	GO:0030026: cellular manganese ion homeostasis	1.98E-03
60	GO:0051510: regulation of unidimensional cell growth	1.98E-03
61	GO:0009396: folic acid-containing compound biosynthetic process	1.98E-03
62	GO:0009704: de-etiolation	2.29E-03
63	GO:0009231: riboflavin biosynthetic process	2.29E-03
64	GO:0016559: peroxisome fission	2.29E-03
65	GO:0048564: photosystem I assembly	2.29E-03
66	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.29E-03
67	GO:0071482: cellular response to light stimulus	2.61E-03
68	GO:0046916: cellular transition metal ion homeostasis	2.95E-03
69	GO:0006783: heme biosynthetic process	2.95E-03
70	GO:0015780: nucleotide-sugar transport	2.95E-03
71	GO:0019432: triglyceride biosynthetic process	2.95E-03
72	GO:0009821: alkaloid biosynthetic process	2.95E-03
73	GO:0009640: photomorphogenesis	3.12E-03
74	GO:0008356: asymmetric cell division	3.31E-03
75	GO:1900426: positive regulation of defense response to bacterium	3.31E-03
76	GO:0009638: phototropism	3.31E-03
77	GO:0006779: porphyrin-containing compound biosynthetic process	3.31E-03
78	GO:0035999: tetrahydrofolate interconversion	3.31E-03
79	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.66E-03
80	GO:0045036: protein targeting to chloroplast	3.68E-03
81	GO:0051555: flavonol biosynthetic process	3.68E-03
82	GO:0055062: phosphate ion homeostasis	3.68E-03
83	GO:0046777: protein autophosphorylation	3.82E-03
84	GO:0043085: positive regulation of catalytic activity	4.06E-03
85	GO:0006352: DNA-templated transcription, initiation	4.06E-03
86	GO:0006816: calcium ion transport	4.06E-03
87	GO:0008285: negative regulation of cell proliferation	4.06E-03
88	GO:0006790: sulfur compound metabolic process	4.45E-03
89	GO:0030048: actin filament-based movement	4.86E-03
90	GO:0050826: response to freezing	4.86E-03
91	GO:0010075: regulation of meristem growth	4.86E-03
92	GO:0009767: photosynthetic electron transport chain	4.86E-03
93	GO:0009785: blue light signaling pathway	4.86E-03
94	GO:0034605: cellular response to heat	5.28E-03
95	GO:0006541: glutamine metabolic process	5.28E-03
96	GO:0019253: reductive pentose-phosphate cycle	5.28E-03
97	GO:0007031: peroxisome organization	5.71E-03
98	GO:0006071: glycerol metabolic process	6.15E-03
99	GO:0006289: nucleotide-excision repair	6.61E-03
100	GO:2000377: regulation of reactive oxygen species metabolic process	6.61E-03
101	GO:0010073: meristem maintenance	7.08E-03
102	GO:0009058: biosynthetic process	7.86E-03
103	GO:0016226: iron-sulfur cluster assembly	8.05E-03
104	GO:0010227: floral organ abscission	8.56E-03
105	GO:0009693: ethylene biosynthetic process	8.56E-03
106	GO:0070417: cellular response to cold	9.60E-03
107	GO:0010118: stomatal movement	1.01E-02
108	GO:0007623: circadian rhythm	1.03E-02
109	GO:0006520: cellular amino acid metabolic process	1.07E-02
110	GO:0042752: regulation of circadian rhythm	1.12E-02
111	GO:0006810: transport	1.34E-02
112	GO:1901657: glycosyl compound metabolic process	1.36E-02
113	GO:0009658: chloroplast organization	1.60E-02
114	GO:0016126: sterol biosynthetic process	1.61E-02
115	GO:0010029: regulation of seed germination	1.67E-02
116	GO:0010411: xyloglucan metabolic process	1.81E-02
117	GO:0015995: chlorophyll biosynthetic process	1.81E-02
118	GO:0030244: cellulose biosynthetic process	1.94E-02
119	GO:0018298: protein-chromophore linkage	1.94E-02
120	GO:0080167: response to karrikin	1.99E-02
121	GO:0010218: response to far red light	2.08E-02
122	GO:0010043: response to zinc ion	2.15E-02
123	GO:0007568: aging	2.15E-02
124	GO:0009631: cold acclimation	2.15E-02
125	GO:0030001: metal ion transport	2.52E-02
126	GO:0006839: mitochondrial transport	2.52E-02
127	GO:0010114: response to red light	2.75E-02
128	GO:0009744: response to sucrose	2.75E-02
129	GO:0009644: response to high light intensity	2.91E-02
130	GO:0008643: carbohydrate transport	2.91E-02
131	GO:0006260: DNA replication	3.15E-02
132	GO:0009664: plant-type cell wall organization	3.24E-02
133	GO:0042538: hyperosmotic salinity response	3.24E-02
134	GO:0055114: oxidation-reduction process	3.34E-02
135	GO:0051603: proteolysis involved in cellular protein catabolic process	3.49E-02
136	GO:0006417: regulation of translation	3.66E-02

Rank	GO Term	Adjusted P value
1	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0045436: lycopene beta cyclase activity	0.00E+00
4	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
5	GO:0046905: phytoene synthase activity	0.00E+00
6	GO:0004848: ureidoglycolate hydrolase activity	2.99E-06
7	GO:0048038: quinone binding	6.91E-05
8	GO:0016783: sulfurtransferase activity	1.25E-04
9	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	1.25E-04
10	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.25E-04
11	GO:0046480: galactolipid galactosyltransferase activity	1.25E-04
12	GO:0046906: tetrapyrrole binding	1.25E-04
13	GO:0080079: cellobiose glucosidase activity	1.25E-04
14	GO:0015085: calcium ion transmembrane transporter activity	1.25E-04
15	GO:0004071: aspartate-ammonia ligase activity	1.25E-04
16	GO:0004325: ferrochelatase activity	1.25E-04
17	GO:0051996: squalene synthase activity	1.25E-04
18	GO:0004329: formate-tetrahydrofolate ligase activity	2.90E-04
19	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	2.90E-04
20	GO:0080045: quercetin 3'-O-glucosyltransferase activity	2.90E-04
21	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	2.90E-04
22	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	2.90E-04
23	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	2.90E-04
24	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	2.90E-04
25	GO:0004046: aminoacylase activity	2.90E-04
26	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	2.90E-04
27	GO:0051537: 2 iron, 2 sulfur cluster binding	3.80E-04
28	GO:0004180: carboxypeptidase activity	4.78E-04
29	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.78E-04
30	GO:0032947: protein complex scaffold	4.78E-04
31	GO:0003935: GTP cyclohydrolase II activity	4.78E-04
32	GO:0004792: thiosulfate sulfurtransferase activity	6.85E-04
33	GO:0009882: blue light photoreceptor activity	6.85E-04
34	GO:0047627: adenylylsulfatase activity	6.85E-04
35	GO:0000254: C-4 methylsterol oxidase activity	6.85E-04
36	GO:0016851: magnesium chelatase activity	6.85E-04
37	GO:0015368: calcium:cation antiporter activity	9.08E-04
38	GO:0001053: plastid sigma factor activity	9.08E-04
39	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.08E-04
40	GO:0015369: calcium:proton antiporter activity	9.08E-04
41	GO:0016987: sigma factor activity	9.08E-04
42	GO:0004518: nuclease activity	1.11E-03
43	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.41E-03
44	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.41E-03
45	GO:0004144: diacylglycerol O-acyltransferase activity	1.68E-03
46	GO:0019899: enzyme binding	1.98E-03
47	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.98E-03
48	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	2.29E-03
49	GO:0046914: transition metal ion binding	2.61E-03
50	GO:0071949: FAD binding	2.95E-03
51	GO:0016844: strictosidine synthase activity	3.31E-03
52	GO:0004129: cytochrome-c oxidase activity	4.06E-03
53	GO:0008378: galactosyltransferase activity	4.45E-03
54	GO:0031072: heat shock protein binding	4.86E-03
55	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.28E-03
56	GO:0080043: quercetin 3-O-glucosyltransferase activity	5.44E-03
57	GO:0080044: quercetin 7-O-glucosyltransferase activity	5.44E-03
58	GO:0003887: DNA-directed DNA polymerase activity	6.15E-03
59	GO:0051536: iron-sulfur cluster binding	6.61E-03
60	GO:0004176: ATP-dependent peptidase activity	7.56E-03
61	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	7.66E-03
62	GO:0008080: N-acetyltransferase activity	1.07E-02
63	GO:0008194: UDP-glycosyltransferase activity	1.15E-02
64	GO:0042802: identical protein binding	1.31E-02
65	GO:0004672: protein kinase activity	1.34E-02
66	GO:0008483: transaminase activity	1.48E-02
67	GO:0008237: metallopeptidase activity	1.48E-02
68	GO:0016413: O-acetyltransferase activity	1.54E-02
69	GO:0016168: chlorophyll binding	1.67E-02
70	GO:0030247: polysaccharide binding	1.81E-02
71	GO:0008236: serine-type peptidase activity	1.87E-02
72	GO:0004222: metalloendopeptidase activity	2.08E-02
73	GO:0008422: beta-glucosidase activity	2.45E-02
74	GO:0042803: protein homodimerization activity	2.49E-02
75	GO:0004185: serine-type carboxypeptidase activity	2.75E-02
76	GO:0005506: iron ion binding	2.84E-02
77	GO:0004674: protein serine/threonine kinase activity	2.90E-02
78	GO:0005198: structural molecule activity	2.99E-02
79	GO:0009055: electron carrier activity	3.14E-02
80	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.40E-02
81	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.92E-02
82	GO:0016491: oxidoreductase activity	4.07E-02
83	GO:0022857: transmembrane transporter activity	4.19E-02
84	GO:0051082: unfolded protein binding	4.37E-02
85	GO:0016746: transferase activity, transferring acyl groups	4.47E-02
86	GO:0004386: helicase activity	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	6.36E-17
2	GO:0009535: chloroplast thylakoid membrane	4.33E-07
3	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.90E-06
4	GO:0016605: PML body	4.78E-04
5	GO:0055035: plastid thylakoid membrane	1.15E-03
6	GO:0009840: chloroplastic endopeptidase Clp complex	1.68E-03
7	GO:0031359: integral component of chloroplast outer membrane	1.98E-03
8	GO:0005811: lipid particle	2.61E-03
9	GO:0005779: integral component of peroxisomal membrane	2.61E-03
10	GO:0016604: nuclear body	3.31E-03
11	GO:0031969: chloroplast membrane	3.51E-03
12	GO:0043234: protein complex	6.15E-03
13	GO:0042651: thylakoid membrane	7.08E-03
14	GO:0005623: cell	7.66E-03
15	GO:0005773: vacuole	1.17E-02
16	GO:0009523: photosystem II	1.18E-02
17	GO:0005777: peroxisome	1.42E-02
18	GO:0005778: peroxisomal membrane	1.48E-02
19	GO:0009707: chloroplast outer membrane	1.94E-02
20	GO:0005743: mitochondrial inner membrane	2.73E-02
21	GO:0043231: intracellular membrane-bounded organelle	3.23E-02
22	GO:0031966: mitochondrial membrane	3.24E-02
23	GO:0009536: plastid	3.74E-02
24	GO:0009706: chloroplast inner membrane	4.37E-02
25	GO:0009570: chloroplast stroma	4.64E-02
26	GO:0010287: plastoglobule	4.94E-02
27	GO:0016021: integral component of membrane	4.96E-02