co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G67030

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0046677: response to antibiotic	0.00E+00
4	GO:0016118: carotenoid catabolic process	0.00E+00
5	GO:0015882: L-ascorbic acid transport	0.00E+00
6	GO:0017038: protein import	0.00E+00
7	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
8	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
9	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
10	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
11	GO:0009768: photosynthesis, light harvesting in photosystem I	1.28E-11
12	GO:0015979: photosynthesis	1.38E-11
13	GO:0018298: protein-chromophore linkage	2.60E-11
14	GO:0009769: photosynthesis, light harvesting in photosystem II	1.44E-09
15	GO:0006021: inositol biosynthetic process	2.71E-08
16	GO:0009645: response to low light intensity stimulus	3.58E-07
17	GO:0009644: response to high light intensity	5.08E-07
18	GO:0006000: fructose metabolic process	2.08E-06
19	GO:0015995: chlorophyll biosynthetic process	3.74E-06
20	GO:0009416: response to light stimulus	4.17E-06
21	GO:0010207: photosystem II assembly	5.70E-06
22	GO:0010218: response to far red light	5.79E-06
23	GO:0055114: oxidation-reduction process	1.22E-05
24	GO:0010114: response to red light	1.33E-05
25	GO:0009269: response to desiccation	1.42E-05
26	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.35E-05
27	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.35E-05
28	GO:0010196: nonphotochemical quenching	4.52E-05
29	GO:0009642: response to light intensity	5.89E-05
30	GO:0006002: fructose 6-phosphate metabolic process	7.46E-05
31	GO:0010206: photosystem II repair	9.24E-05
32	GO:0051775: response to redox state	1.02E-04
33	GO:0006659: phosphatidylserine biosynthetic process	1.02E-04
34	GO:0043609: regulation of carbon utilization	1.02E-04
35	GO:0010028: xanthophyll cycle	1.02E-04
36	GO:0034337: RNA folding	1.02E-04
37	GO:0009773: photosynthetic electron transport in photosystem I	1.56E-04
38	GO:0043085: positive regulation of catalytic activity	1.56E-04
39	GO:0009637: response to blue light	1.67E-04
40	GO:0034599: cellular response to oxidative stress	1.78E-04
41	GO:0006094: gluconeogenesis	2.09E-04
42	GO:0016121: carotene catabolic process	2.40E-04
43	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.40E-04
44	GO:0042853: L-alanine catabolic process	2.40E-04
45	GO:0042548: regulation of photosynthesis, light reaction	2.40E-04
46	GO:0035304: regulation of protein dephosphorylation	2.40E-04
47	GO:0016124: xanthophyll catabolic process	2.40E-04
48	GO:0010042: response to manganese ion	2.40E-04
49	GO:0006432: phenylalanyl-tRNA aminoacylation	2.40E-04
50	GO:0097054: L-glutamate biosynthetic process	2.40E-04
51	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.40E-04
52	GO:0006729: tetrahydrobiopterin biosynthetic process	2.40E-04
53	GO:1902448: positive regulation of shade avoidance	3.99E-04
54	GO:0090391: granum assembly	3.99E-04
55	GO:0016117: carotenoid biosynthetic process	5.65E-04
56	GO:0006020: inositol metabolic process	5.73E-04
57	GO:0006107: oxaloacetate metabolic process	5.73E-04
58	GO:0006537: glutamate biosynthetic process	5.73E-04
59	GO:0006662: glycerol ether metabolic process	6.55E-04
60	GO:0006814: sodium ion transport	7.02E-04
61	GO:0009791: post-embryonic development	7.51E-04
62	GO:0008654: phospholipid biosynthetic process	7.51E-04
63	GO:0019676: ammonia assimilation cycle	7.62E-04
64	GO:0006545: glycine biosynthetic process	7.62E-04
65	GO:0009765: photosynthesis, light harvesting	7.62E-04
66	GO:0006109: regulation of carbohydrate metabolic process	7.62E-04
67	GO:0015994: chlorophyll metabolic process	7.62E-04
68	GO:0030104: water homeostasis	7.62E-04
69	GO:0006734: NADH metabolic process	7.62E-04
70	GO:0010109: regulation of photosynthesis	7.62E-04
71	GO:0016123: xanthophyll biosynthetic process	9.62E-04
72	GO:0016120: carotene biosynthetic process	9.62E-04
73	GO:0042549: photosystem II stabilization	1.17E-03
74	GO:0046855: inositol phosphate dephosphorylation	1.17E-03
75	GO:0009635: response to herbicide	1.17E-03
76	GO:0009643: photosynthetic acclimation	1.17E-03
77	GO:0050665: hydrogen peroxide biosynthetic process	1.17E-03
78	GO:0009793: embryo development ending in seed dormancy	1.32E-03
79	GO:0071470: cellular response to osmotic stress	1.40E-03
80	GO:1901259: chloroplast rRNA processing	1.40E-03
81	GO:0010189: vitamin E biosynthetic process	1.40E-03
82	GO:0009854: oxidative photosynthetic carbon pathway	1.40E-03
83	GO:0030026: cellular manganese ion homeostasis	1.65E-03
84	GO:0009853: photorespiration	1.85E-03
85	GO:0009658: chloroplast organization	1.88E-03
86	GO:0030091: protein repair	1.90E-03
87	GO:0006605: protein targeting	1.90E-03
88	GO:0071482: cellular response to light stimulus	2.17E-03
89	GO:0010262: somatic embryogenesis	2.17E-03
90	GO:0098656: anion transmembrane transport	2.45E-03
91	GO:0006098: pentose-phosphate shunt	2.45E-03
92	GO:0090333: regulation of stomatal closure	2.45E-03
93	GO:0010205: photoinhibition	2.74E-03
94	GO:0009698: phenylpropanoid metabolic process	3.36E-03
95	GO:0019684: photosynthesis, light reaction	3.36E-03
96	GO:0006790: sulfur compound metabolic process	3.69E-03
97	GO:0005983: starch catabolic process	3.69E-03
98	GO:0005986: sucrose biosynthetic process	4.02E-03
99	GO:0006108: malate metabolic process	4.02E-03
100	GO:0055046: microgametogenesis	4.02E-03
101	GO:0019253: reductive pentose-phosphate cycle	4.37E-03
102	GO:0046688: response to copper ion	4.72E-03
103	GO:0090351: seedling development	4.72E-03
104	GO:0046854: phosphatidylinositol phosphorylation	4.72E-03
105	GO:0006833: water transport	5.09E-03
106	GO:0008299: isoprenoid biosynthetic process	5.85E-03
107	GO:0019748: secondary metabolic process	6.64E-03
108	GO:0071215: cellular response to abscisic acid stimulus	7.06E-03
109	GO:0007623: circadian rhythm	7.80E-03
110	GO:0034220: ion transmembrane transport	8.35E-03
111	GO:0009646: response to absence of light	9.26E-03
112	GO:0019252: starch biosynthetic process	9.73E-03
113	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.02E-02
114	GO:0071554: cell wall organization or biogenesis	1.02E-02
115	GO:0010090: trichome morphogenesis	1.12E-02
116	GO:0051607: defense response to virus	1.27E-02
117	GO:0001666: response to hypoxia	1.32E-02
118	GO:0010027: thylakoid membrane organization	1.32E-02
119	GO:0048573: photoperiodism, flowering	1.48E-02
120	GO:0016311: dephosphorylation	1.54E-02
121	GO:0006499: N-terminal protein myristoylation	1.71E-02
122	GO:0006811: ion transport	1.71E-02
123	GO:0010119: regulation of stomatal movement	1.77E-02
124	GO:0007568: aging	1.77E-02
125	GO:0045454: cell redox homeostasis	1.80E-02
126	GO:0016051: carbohydrate biosynthetic process	1.89E-02
127	GO:0006099: tricarboxylic acid cycle	1.95E-02
128	GO:0042742: defense response to bacterium	2.05E-02
129	GO:0042542: response to hydrogen peroxide	2.20E-02
130	GO:0009408: response to heat	2.22E-02
131	GO:0009640: photomorphogenesis	2.26E-02
132	GO:0009744: response to sucrose	2.26E-02
133	GO:0006812: cation transport	2.66E-02
134	GO:0006364: rRNA processing	2.80E-02
135	GO:0009409: response to cold	2.99E-02
136	GO:0006096: glycolytic process	3.15E-02
137	GO:0043086: negative regulation of catalytic activity	3.15E-02
138	GO:0048316: seed development	3.22E-02
139	GO:0006810: transport	3.31E-02
140	GO:0005975: carbohydrate metabolic process	3.45E-02
141	GO:0009624: response to nematode	3.59E-02
142	GO:0009735: response to cytokinin	3.60E-02
143	GO:0009845: seed germination	4.46E-02
144	GO:0009790: embryo development	4.70E-02
145	GO:0055085: transmembrane transport	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
2	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
3	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
4	GO:0016166: phytoene dehydrogenase activity	0.00E+00
5	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
8	GO:0045550: geranylgeranyl reductase activity	0.00E+00
9	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
10	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
11	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
12	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
13	GO:0010486: manganese:proton antiporter activity	0.00E+00
14	GO:0046408: chlorophyll synthetase activity	0.00E+00
15	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
16	GO:0031409: pigment binding	6.15E-12
17	GO:0016168: chlorophyll binding	9.06E-10
18	GO:0004512: inositol-3-phosphate synthase activity	5.49E-07
19	GO:0046872: metal ion binding	8.01E-06
20	GO:0051538: 3 iron, 4 sulfur cluster binding	1.55E-05
21	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.02E-04
22	GO:0047958: glycine:2-oxoglutarate aminotransferase activity	1.02E-04
23	GO:0010242: oxygen evolving activity	1.02E-04
24	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.02E-04
25	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.02E-04
26	GO:0008746: NAD(P)+ transhydrogenase activity	1.02E-04
27	GO:0016041: glutamate synthase (ferredoxin) activity	1.02E-04
28	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.02E-04
29	GO:0008047: enzyme activator activity	1.33E-04
30	GO:0005315: inorganic phosphate transmembrane transporter activity	2.09E-04
31	GO:0031072: heat shock protein binding	2.09E-04
32	GO:0052832: inositol monophosphate 3-phosphatase activity	2.40E-04
33	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.40E-04
34	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	2.40E-04
35	GO:0008934: inositol monophosphate 1-phosphatase activity	2.40E-04
36	GO:0052833: inositol monophosphate 4-phosphatase activity	2.40E-04
37	GO:0004826: phenylalanine-tRNA ligase activity	2.40E-04
38	GO:0019172: glyoxalase III activity	2.40E-04
39	GO:0010291: carotene beta-ring hydroxylase activity	2.40E-04
40	GO:0047746: chlorophyllase activity	2.40E-04
41	GO:0015462: ATPase-coupled protein transmembrane transporter activity	3.99E-04
42	GO:0003913: DNA photolyase activity	3.99E-04
43	GO:0070402: NADPH binding	3.99E-04
44	GO:0008514: organic anion transmembrane transporter activity	5.22E-04
45	GO:0047134: protein-disulfide reductase activity	5.65E-04
46	GO:0008508: bile acid:sodium symporter activity	5.73E-04
47	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	5.73E-04
48	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	5.73E-04
49	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	5.73E-04
50	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	5.73E-04
51	GO:0016851: magnesium chelatase activity	5.73E-04
52	GO:0004792: thiosulfate sulfurtransferase activity	5.73E-04
53	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	5.73E-04
54	GO:0004791: thioredoxin-disulfide reductase activity	7.02E-04
55	GO:0008453: alanine-glyoxylate transaminase activity	7.62E-04
56	GO:0008891: glycolate oxidase activity	7.62E-04
57	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.07E-04
58	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	9.62E-04
59	GO:2001070: starch binding	1.17E-03
60	GO:0004332: fructose-bisphosphate aldolase activity	1.17E-03
61	GO:0000293: ferric-chelate reductase activity	1.17E-03
62	GO:0042578: phosphoric ester hydrolase activity	1.17E-03
63	GO:0004462: lactoylglutathione lyase activity	1.17E-03
64	GO:0016615: malate dehydrogenase activity	1.17E-03
65	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.40E-03
66	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.40E-03
67	GO:0030060: L-malate dehydrogenase activity	1.40E-03
68	GO:0004017: adenylate kinase activity	1.40E-03
69	GO:0009881: photoreceptor activity	1.65E-03
70	GO:0003746: translation elongation factor activity	1.85E-03
71	GO:0008135: translation factor activity, RNA binding	2.17E-03
72	GO:0004185: serine-type carboxypeptidase activity	2.38E-03
73	GO:0071949: FAD binding	2.45E-03
74	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	2.74E-03
75	GO:0005384: manganese ion transmembrane transporter activity	2.74E-03
76	GO:0000049: tRNA binding	3.69E-03
77	GO:0004565: beta-galactosidase activity	4.02E-03
78	GO:0008266: poly(U) RNA binding	4.37E-03
79	GO:0051082: unfolded protein binding	4.52E-03
80	GO:0015035: protein disulfide oxidoreductase activity	4.66E-03
81	GO:0003712: transcription cofactor activity	4.72E-03
82	GO:0003954: NADH dehydrogenase activity	5.46E-03
83	GO:0004857: enzyme inhibitor activity	5.46E-03
84	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.81E-03
85	GO:0008324: cation transmembrane transporter activity	5.85E-03
86	GO:0016491: oxidoreductase activity	7.45E-03
87	GO:0003756: protein disulfide isomerase activity	7.48E-03
88	GO:0016853: isomerase activity	9.26E-03
89	GO:0010181: FMN binding	9.26E-03
90	GO:0016413: O-acetyltransferase activity	1.27E-02
91	GO:0015250: water channel activity	1.32E-02
92	GO:0016787: hydrolase activity	1.55E-02
93	GO:0030145: manganese ion binding	1.77E-02
94	GO:0003993: acid phosphatase activity	1.95E-02
95	GO:0005198: structural molecule activity	2.46E-02
96	GO:0015293: symporter activity	2.46E-02
97	GO:0016298: lipase activity	2.86E-02
98	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.22E-02
99	GO:0016874: ligase activity	3.44E-02
100	GO:0019843: rRNA binding	4.22E-02
101	GO:0030170: pyridoxal phosphate binding	4.54E-02
102	GO:0015144: carbohydrate transmembrane transporter activity	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.26E-30
2	GO:0009534: chloroplast thylakoid	3.89E-24
3	GO:0009941: chloroplast envelope	6.51E-22
4	GO:0009535: chloroplast thylakoid membrane	5.79E-20
5	GO:0009570: chloroplast stroma	5.26E-19
6	GO:0009579: thylakoid	6.93E-15
7	GO:0010287: plastoglobule	9.03E-11
8	GO:0009522: photosystem I	1.33E-10
9	GO:0009523: photosystem II	1.45E-08
10	GO:0009517: PSII associated light-harvesting complex II	2.71E-08
11	GO:0030076: light-harvesting complex	8.18E-08
12	GO:0031977: thylakoid lumen	1.12E-05
13	GO:0009706: chloroplast inner membrane	4.88E-05
14	GO:0009783: photosystem II antenna complex	1.02E-04
15	GO:0009515: granal stacked thylakoid	1.02E-04
16	GO:0031304: intrinsic component of mitochondrial inner membrane	2.40E-04
17	GO:0043036: starch grain	2.40E-04
18	GO:0048046: apoplast	2.50E-04
19	GO:0009654: photosystem II oxygen evolving complex	3.67E-04
20	GO:0042651: thylakoid membrane	3.67E-04
21	GO:0010007: magnesium chelatase complex	3.99E-04
22	GO:0009509: chromoplast	3.99E-04
23	GO:0009543: chloroplast thylakoid lumen	7.34E-04
24	GO:0019898: extrinsic component of membrane	7.51E-04
25	GO:0016020: membrane	1.24E-03
26	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.45E-03
27	GO:0031969: chloroplast membrane	2.47E-03
28	GO:0032040: small-subunit processome	3.69E-03
29	GO:0016602: CCAAT-binding factor complex	4.02E-03
30	GO:0030095: chloroplast photosystem II	4.37E-03
31	GO:0005623: cell	5.81E-03
32	GO:0005773: vacuole	6.75E-03
33	GO:0005759: mitochondrial matrix	7.10E-03
34	GO:0005770: late endosome	8.80E-03
35	GO:0005777: peroxisome	9.99E-03
36	GO:0031902: late endosome membrane	2.13E-02
37	GO:0016021: integral component of membrane	2.46E-02
38	GO:0022626: cytosolic ribosome	3.77E-02