co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G66090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090706: specification of plant organ position	0.00E+00
2	GO:0009715: chalcone biosynthetic process	0.00E+00
3	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
4	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
5	GO:0006114: glycerol biosynthetic process	0.00E+00
6	GO:0006399: tRNA metabolic process	0.00E+00
7	GO:0015979: photosynthesis	3.33E-08
8	GO:0010027: thylakoid membrane organization	6.96E-07
9	GO:0090391: granum assembly	7.40E-06
10	GO:0006109: regulation of carbohydrate metabolic process	3.11E-05
11	GO:0048564: photosystem I assembly	1.73E-04
12	GO:0043953: protein transport by the Tat complex	2.06E-04
13	GO:0000476: maturation of 4.5S rRNA	2.06E-04
14	GO:0000967: rRNA 5'-end processing	2.06E-04
15	GO:0000481: maturation of 5S rRNA	2.06E-04
16	GO:0065002: intracellular protein transmembrane transport	2.06E-04
17	GO:0043686: co-translational protein modification	2.06E-04
18	GO:0043007: maintenance of rDNA	2.06E-04
19	GO:0034337: RNA folding	2.06E-04
20	GO:0010450: inflorescence meristem growth	2.06E-04
21	GO:0015995: chlorophyll biosynthetic process	3.89E-04
22	GO:0016311: dephosphorylation	4.16E-04
23	GO:0043085: positive regulation of catalytic activity	4.23E-04
24	GO:0009629: response to gravity	4.62E-04
25	GO:0034470: ncRNA processing	4.62E-04
26	GO:0006954: inflammatory response	7.52E-04
27	GO:0005977: glycogen metabolic process	7.52E-04
28	GO:0045165: cell fate commitment	7.52E-04
29	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.07E-03
30	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.07E-03
31	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.07E-03
32	GO:2001141: regulation of RNA biosynthetic process	1.07E-03
33	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.07E-03
34	GO:0006020: inositol metabolic process	1.07E-03
35	GO:0010239: chloroplast mRNA processing	1.07E-03
36	GO:0009658: chloroplast organization	1.24E-03
37	GO:0015994: chlorophyll metabolic process	1.43E-03
38	GO:0022622: root system development	1.43E-03
39	GO:0006021: inositol biosynthetic process	1.43E-03
40	GO:0010021: amylopectin biosynthetic process	1.43E-03
41	GO:0043086: negative regulation of catalytic activity	1.47E-03
42	GO:0006662: glycerol ether metabolic process	1.66E-03
43	GO:0031365: N-terminal protein amino acid modification	1.81E-03
44	GO:1902183: regulation of shoot apical meristem development	1.81E-03
45	GO:0010158: abaxial cell fate specification	1.81E-03
46	GO:0046855: inositol phosphate dephosphorylation	2.24E-03
47	GO:0010190: cytochrome b6f complex assembly	2.24E-03
48	GO:0042549: photosystem II stabilization	2.24E-03
49	GO:0045454: cell redox homeostasis	2.26E-03
50	GO:1901259: chloroplast rRNA processing	2.69E-03
51	GO:0032259: methylation	2.91E-03
52	GO:0010196: nonphotochemical quenching	3.16E-03
53	GO:1900057: positive regulation of leaf senescence	3.16E-03
54	GO:0032880: regulation of protein localization	3.16E-03
55	GO:0009642: response to light intensity	3.67E-03
56	GO:0006605: protein targeting	3.67E-03
57	GO:0032508: DNA duplex unwinding	3.67E-03
58	GO:0031540: regulation of anthocyanin biosynthetic process	3.67E-03
59	GO:0000105: histidine biosynthetic process	3.67E-03
60	GO:0009231: riboflavin biosynthetic process	3.67E-03
61	GO:0016559: peroxisome fission	3.67E-03
62	GO:0009813: flavonoid biosynthetic process	4.01E-03
63	GO:0032544: plastid translation	4.20E-03
64	GO:0017004: cytochrome complex assembly	4.20E-03
65	GO:0010093: specification of floral organ identity	4.20E-03
66	GO:0071482: cellular response to light stimulus	4.20E-03
67	GO:0010206: photosystem II repair	4.75E-03
68	GO:2000024: regulation of leaf development	4.75E-03
69	GO:0009637: response to blue light	4.84E-03
70	GO:0034599: cellular response to oxidative stress	5.05E-03
71	GO:0006779: porphyrin-containing compound biosynthetic process	5.32E-03
72	GO:0010205: photoinhibition	5.32E-03
73	GO:0006782: protoporphyrinogen IX biosynthetic process	5.93E-03
74	GO:0010114: response to red light	6.23E-03
75	GO:0009773: photosynthetic electron transport in photosystem I	6.55E-03
76	GO:0019684: photosynthesis, light reaction	6.55E-03
77	GO:0009089: lysine biosynthetic process via diaminopimelate	6.55E-03
78	GO:0006352: DNA-templated transcription, initiation	6.55E-03
79	GO:0018119: peptidyl-cysteine S-nitrosylation	6.55E-03
80	GO:0005983: starch catabolic process	7.20E-03
81	GO:0006790: sulfur compound metabolic process	7.20E-03
82	GO:2000012: regulation of auxin polar transport	7.87E-03
83	GO:0080167: response to karrikin	8.52E-03
84	GO:0010020: chloroplast fission	8.56E-03
85	GO:0009933: meristem structural organization	8.56E-03
86	GO:0010207: photosystem II assembly	8.56E-03
87	GO:0019853: L-ascorbic acid biosynthetic process	9.27E-03
88	GO:0010030: positive regulation of seed germination	9.27E-03
89	GO:0046854: phosphatidylinositol phosphorylation	9.27E-03
90	GO:0000162: tryptophan biosynthetic process	1.00E-02
91	GO:0006863: purine nucleobase transport	1.00E-02
92	GO:0009944: polarity specification of adaxial/abaxial axis	1.08E-02
93	GO:0009768: photosynthesis, light harvesting in photosystem I	1.15E-02
94	GO:0019953: sexual reproduction	1.15E-02
95	GO:0019915: lipid storage	1.23E-02
96	GO:0061077: chaperone-mediated protein folding	1.23E-02
97	GO:0048511: rhythmic process	1.23E-02
98	GO:0071369: cellular response to ethylene stimulus	1.40E-02
99	GO:0006012: galactose metabolic process	1.40E-02
100	GO:0009561: megagametogenesis	1.48E-02
101	GO:0009306: protein secretion	1.48E-02
102	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.57E-02
103	GO:0008284: positive regulation of cell proliferation	1.57E-02
104	GO:0042631: cellular response to water deprivation	1.66E-02
105	GO:0006412: translation	1.72E-02
106	GO:0010154: fruit development	1.75E-02
107	GO:0009958: positive gravitropism	1.75E-02
108	GO:0006520: cellular amino acid metabolic process	1.75E-02
109	GO:0048868: pollen tube development	1.75E-02
110	GO:0009790: embryo development	1.76E-02
111	GO:0042752: regulation of circadian rhythm	1.84E-02
112	GO:0019252: starch biosynthetic process	1.94E-02
113	GO:0071554: cell wall organization or biogenesis	2.03E-02
114	GO:0009567: double fertilization forming a zygote and endosperm	2.33E-02
115	GO:0009817: defense response to fungus, incompatible interaction	3.19E-02
116	GO:0018298: protein-chromophore linkage	3.19E-02
117	GO:0010218: response to far red light	3.42E-02
118	GO:0048527: lateral root development	3.54E-02
119	GO:0007568: aging	3.54E-02
120	GO:0009867: jasmonic acid mediated signaling pathway	3.78E-02
121	GO:0005975: carbohydrate metabolic process	3.96E-02
122	GO:0006631: fatty acid metabolic process	4.27E-02
123	GO:0009926: auxin polar transport	4.52E-02
124	GO:0051707: response to other organism	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
4	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
5	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
6	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
7	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
8	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
9	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.78E-06
11	GO:0005528: FK506 binding	4.88E-05
12	GO:0004857: enzyme inhibitor activity	4.88E-05
13	GO:0004462: lactoylglutathione lyase activity	7.36E-05
14	GO:0050308: sugar-phosphatase activity	2.06E-04
15	GO:0042586: peptide deformylase activity	2.06E-04
16	GO:0019203: carbohydrate phosphatase activity	2.06E-04
17	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.06E-04
18	GO:0008047: enzyme activator activity	3.65E-04
19	GO:0019843: rRNA binding	3.92E-04
20	GO:0008934: inositol monophosphate 1-phosphatase activity	4.62E-04
21	GO:0052833: inositol monophosphate 4-phosphatase activity	4.62E-04
22	GO:0030385: ferredoxin:thioredoxin reductase activity	4.62E-04
23	GO:0019172: glyoxalase III activity	4.62E-04
24	GO:0019156: isoamylase activity	4.62E-04
25	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.62E-04
26	GO:0047746: chlorophyllase activity	4.62E-04
27	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.62E-04
28	GO:0052832: inositol monophosphate 3-phosphatase activity	4.62E-04
29	GO:0003993: acid phosphatase activity	6.35E-04
30	GO:0005504: fatty acid binding	7.52E-04
31	GO:0004751: ribose-5-phosphate isomerase activity	7.52E-04
32	GO:0016851: magnesium chelatase activity	1.07E-03
33	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.07E-03
34	GO:0080032: methyl jasmonate esterase activity	1.43E-03
35	GO:0016987: sigma factor activity	1.43E-03
36	GO:0045430: chalcone isomerase activity	1.43E-03
37	GO:0047134: protein-disulfide reductase activity	1.43E-03
38	GO:0001053: plastid sigma factor activity	1.43E-03
39	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.43E-03
40	GO:0004791: thioredoxin-disulfide reductase activity	1.78E-03
41	GO:0015035: protein disulfide oxidoreductase activity	1.93E-03
42	GO:0042578: phosphoric ester hydrolase activity	2.24E-03
43	GO:0004556: alpha-amylase activity	2.24E-03
44	GO:2001070: starch binding	2.24E-03
45	GO:0080030: methyl indole-3-acetate esterase activity	2.24E-03
46	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.32E-03
47	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.69E-03
48	GO:0008195: phosphatidate phosphatase activity	2.69E-03
49	GO:0004033: aldo-keto reductase (NADP) activity	3.67E-03
50	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.75E-03
51	GO:0008168: methyltransferase activity	6.17E-03
52	GO:0003735: structural constituent of ribosome	6.84E-03
53	GO:0004521: endoribonuclease activity	7.20E-03
54	GO:0004565: beta-galactosidase activity	7.87E-03
55	GO:0031072: heat shock protein binding	7.87E-03
56	GO:0008083: growth factor activity	8.56E-03
57	GO:0031409: pigment binding	1.00E-02
58	GO:0005345: purine nucleobase transmembrane transporter activity	1.15E-02
59	GO:0048038: quinone binding	2.03E-02
60	GO:0008017: microtubule binding	2.18E-02
61	GO:0016787: hydrolase activity	2.34E-02
62	GO:0008483: transaminase activity	2.43E-02
63	GO:0016413: O-acetyltransferase activity	2.54E-02
64	GO:0042802: identical protein binding	2.64E-02
65	GO:0016168: chlorophyll binding	2.75E-02
66	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.19E-02
67	GO:0016788: hydrolase activity, acting on ester bonds	3.28E-02
68	GO:0030145: manganese ion binding	3.54E-02
69	GO:0005198: structural molecule activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009349: riboflavin synthase complex	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009507: chloroplast	9.20E-52
5	GO:0009535: chloroplast thylakoid membrane	2.33E-25
6	GO:0009570: chloroplast stroma	4.93E-16
7	GO:0009534: chloroplast thylakoid	1.01E-15
8	GO:0009543: chloroplast thylakoid lumen	6.97E-12
9	GO:0009941: chloroplast envelope	1.54E-11
10	GO:0009579: thylakoid	1.44E-09
11	GO:0031977: thylakoid lumen	4.51E-09
12	GO:0030095: chloroplast photosystem II	5.58E-07
13	GO:0009538: photosystem I reaction center	3.11E-06
14	GO:0009515: granal stacked thylakoid	2.06E-04
15	GO:0031361: integral component of thylakoid membrane	2.06E-04
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.61E-04
17	GO:0010287: plastoglobule	3.60E-04
18	GO:0010007: magnesium chelatase complex	7.52E-04
19	GO:0033281: TAT protein transport complex	7.52E-04
20	GO:0009654: photosystem II oxygen evolving complex	9.35E-04
21	GO:0009523: photosystem II	1.91E-03
22	GO:0019898: extrinsic component of membrane	1.91E-03
23	GO:0005840: ribosome	1.94E-03
24	GO:0009533: chloroplast stromal thylakoid	3.16E-03
25	GO:0008180: COP9 signalosome	4.75E-03
26	GO:0055028: cortical microtubule	5.93E-03
27	GO:0012511: monolayer-surrounded lipid storage body	6.55E-03
28	GO:0032040: small-subunit processome	7.20E-03
29	GO:0009508: plastid chromosome	7.87E-03
30	GO:0030076: light-harvesting complex	9.27E-03
31	GO:0015935: small ribosomal subunit	1.23E-02
32	GO:0009522: photosystem I	1.84E-02
33	GO:0009295: nucleoid	2.43E-02
34	GO:0010319: stromule	2.43E-02
35	GO:0009707: chloroplast outer membrane	3.19E-02
36	GO:0019005: SCF ubiquitin ligase complex	3.19E-02
37	GO:0015934: large ribosomal subunit	3.54E-02
38	GO:0031969: chloroplast membrane	3.98E-02