co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G65480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006482: protein demethylation	0.00E+00
2	GO:0009583: detection of light stimulus	0.00E+00
3	GO:0007037: vacuolar phosphate transport	0.00E+00
4	GO:0048856: anatomical structure development	0.00E+00
5	GO:0071000: response to magnetism	0.00E+00
6	GO:0046460: neutral lipid biosynthetic process	0.00E+00
7	GO:0016576: histone dephosphorylation	0.00E+00
8	GO:0010343: singlet oxygen-mediated programmed cell death	1.41E-06
9	GO:0072387: flavin adenine dinucleotide metabolic process	1.71E-04
10	GO:0048438: floral whorl development	1.71E-04
11	GO:1901529: positive regulation of anion channel activity	3.87E-04
12	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	3.87E-04
13	GO:0010617: circadian regulation of calcium ion oscillation	3.87E-04
14	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	3.87E-04
15	GO:0099402: plant organ development	3.87E-04
16	GO:0035335: peptidyl-tyrosine dephosphorylation	3.87E-04
17	GO:0009767: photosynthetic electron transport chain	4.24E-04
18	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	6.32E-04
19	GO:1902448: positive regulation of shade avoidance	6.32E-04
20	GO:1901672: positive regulation of systemic acquired resistance	6.32E-04
21	GO:0006760: folic acid-containing compound metabolic process	6.32E-04
22	GO:0045739: positive regulation of DNA repair	6.32E-04
23	GO:0046653: tetrahydrofolate metabolic process	9.04E-04
24	GO:1901332: negative regulation of lateral root development	9.04E-04
25	GO:0042274: ribosomal small subunit biogenesis	1.20E-03
26	GO:0031935: regulation of chromatin silencing	1.20E-03
27	GO:0046656: folic acid biosynthetic process	1.20E-03
28	GO:1902347: response to strigolactone	1.20E-03
29	GO:0010375: stomatal complex patterning	1.52E-03
30	GO:0000304: response to singlet oxygen	1.52E-03
31	GO:0010117: photoprotection	1.52E-03
32	GO:0046283: anthocyanin-containing compound metabolic process	1.52E-03
33	GO:0031053: primary miRNA processing	1.87E-03
34	GO:1901371: regulation of leaf morphogenesis	1.87E-03
35	GO:0000741: karyogamy	1.87E-03
36	GO:0060918: auxin transport	1.87E-03
37	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.87E-03
38	GO:0016070: RNA metabolic process	1.87E-03
39	GO:0010310: regulation of hydrogen peroxide metabolic process	2.24E-03
40	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.24E-03
41	GO:0034389: lipid particle organization	2.24E-03
42	GO:0010076: maintenance of floral meristem identity	2.24E-03
43	GO:0010016: shoot system morphogenesis	2.24E-03
44	GO:0046654: tetrahydrofolate biosynthetic process	2.24E-03
45	GO:0010019: chloroplast-nucleus signaling pathway	2.24E-03
46	GO:1900056: negative regulation of leaf senescence	2.64E-03
47	GO:0080111: DNA demethylation	2.64E-03
48	GO:0009396: folic acid-containing compound biosynthetic process	2.64E-03
49	GO:0051510: regulation of unidimensional cell growth	2.64E-03
50	GO:0009451: RNA modification	2.73E-03
51	GO:0048564: photosystem I assembly	3.06E-03
52	GO:0045292: mRNA cis splicing, via spliceosome	3.06E-03
53	GO:0010928: regulation of auxin mediated signaling pathway	3.06E-03
54	GO:0009704: de-etiolation	3.06E-03
55	GO:0006811: ion transport	3.23E-03
56	GO:0009910: negative regulation of flower development	3.39E-03
57	GO:0022900: electron transport chain	3.50E-03
58	GO:0044030: regulation of DNA methylation	3.50E-03
59	GO:0019432: triglyceride biosynthetic process	3.95E-03
60	GO:0009821: alkaloid biosynthetic process	3.95E-03
61	GO:1900426: positive regulation of defense response to bacterium	4.44E-03
62	GO:0009638: phototropism	4.44E-03
63	GO:0035999: tetrahydrofolate interconversion	4.44E-03
64	GO:0010380: regulation of chlorophyll biosynthetic process	4.44E-03
65	GO:0009658: chloroplast organization	4.61E-03
66	GO:0045036: protein targeting to chloroplast	4.93E-03
67	GO:0043085: positive regulation of catalytic activity	5.45E-03
68	GO:0010582: floral meristem determinacy	5.98E-03
69	GO:0009725: response to hormone	6.54E-03
70	GO:0009785: blue light signaling pathway	6.54E-03
71	GO:0010075: regulation of meristem growth	6.54E-03
72	GO:0009266: response to temperature stimulus	7.11E-03
73	GO:0006071: glycerol metabolic process	8.30E-03
74	GO:0000162: tryptophan biosynthetic process	8.30E-03
75	GO:0006289: nucleotide-excision repair	8.92E-03
76	GO:2000377: regulation of reactive oxygen species metabolic process	8.92E-03
77	GO:0032259: methylation	9.42E-03
78	GO:0007017: microtubule-based process	9.56E-03
79	GO:0006730: one-carbon metabolic process	1.09E-02
80	GO:0016226: iron-sulfur cluster assembly	1.09E-02
81	GO:0006284: base-excision repair	1.23E-02
82	GO:0010118: stomatal movement	1.37E-02
83	GO:0010051: xylem and phloem pattern formation	1.37E-02
84	GO:0010087: phloem or xylem histogenesis	1.37E-02
85	GO:0009958: positive gravitropism	1.45E-02
86	GO:0010197: polar nucleus fusion	1.45E-02
87	GO:0009646: response to absence of light	1.52E-02
88	GO:0042752: regulation of circadian rhythm	1.52E-02
89	GO:0009851: auxin biosynthetic process	1.60E-02
90	GO:0007264: small GTPase mediated signal transduction	1.76E-02
91	GO:0006470: protein dephosphorylation	1.82E-02
92	GO:0016579: protein deubiquitination	2.10E-02
93	GO:0016126: sterol biosynthetic process	2.18E-02
94	GO:0055114: oxidation-reduction process	2.34E-02
95	GO:0015995: chlorophyll biosynthetic process	2.45E-02
96	GO:0006950: response to stress	2.45E-02
97	GO:0018298: protein-chromophore linkage	2.64E-02
98	GO:0010218: response to far red light	2.83E-02
99	GO:0048366: leaf development	2.90E-02
100	GO:0010043: response to zinc ion	2.93E-02
101	GO:0006511: ubiquitin-dependent protein catabolic process	3.02E-02
102	GO:0009853: photorespiration	3.12E-02
103	GO:0009637: response to blue light	3.12E-02
104	GO:0006897: endocytosis	3.53E-02
105	GO:0009640: photomorphogenesis	3.74E-02
106	GO:0008283: cell proliferation	3.74E-02
107	GO:0010114: response to red light	3.74E-02
108	GO:0009744: response to sucrose	3.74E-02
109	GO:0009644: response to high light intensity	3.96E-02
110	GO:0009965: leaf morphogenesis	4.06E-02
111	GO:0006260: DNA replication	4.29E-02
112	GO:0000165: MAPK cascade	4.29E-02
113	GO:0006397: mRNA processing	4.68E-02
114	GO:0051603: proteolysis involved in cellular protein catabolic process	4.74E-02
115	GO:0006417: regulation of translation	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
2	GO:0051723: protein methylesterase activity	0.00E+00
3	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
4	GO:0004046: aminoacylase activity	1.41E-06
5	GO:0004848: ureidoglycolate hydrolase activity	5.25E-06
6	GO:0016491: oxidoreductase activity	1.11E-04
7	GO:0046906: tetrapyrrole binding	1.71E-04
8	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.71E-04
9	GO:0071949: FAD binding	1.98E-04
10	GO:0102083: 7,8-dihydromonapterin aldolase activity	3.87E-04
11	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	3.87E-04
12	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	3.87E-04
13	GO:0004150: dihydroneopterin aldolase activity	3.87E-04
14	GO:0004180: carboxypeptidase activity	6.32E-04
15	GO:0032947: protein complex scaffold	6.32E-04
16	GO:0019003: GDP binding	6.32E-04
17	GO:0000900: translation repressor activity, nucleic acid binding	6.32E-04
18	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	6.32E-04
19	GO:0004176: ATP-dependent peptidase activity	7.97E-04
20	GO:0000254: C-4 methylsterol oxidase activity	9.04E-04
21	GO:0000339: RNA cap binding	9.04E-04
22	GO:0009882: blue light photoreceptor activity	9.04E-04
23	GO:0004834: tryptophan synthase activity	1.20E-03
24	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.20E-03
25	GO:0008080: N-acetyltransferase activity	1.28E-03
26	GO:0016787: hydrolase activity	1.41E-03
27	GO:0004518: nuclease activity	1.68E-03
28	GO:0000293: ferric-chelate reductase activity	1.87E-03
29	GO:0008237: metallopeptidase activity	2.01E-03
30	GO:0004144: diacylglycerol O-acyltransferase activity	2.24E-03
31	GO:0019899: enzyme binding	2.64E-03
32	GO:0008143: poly(A) binding	2.64E-03
33	GO:0004222: metalloendopeptidase activity	3.23E-03
34	GO:0008168: methyltransferase activity	4.40E-03
35	GO:0001055: RNA polymerase II activity	4.44E-03
36	GO:0016844: strictosidine synthase activity	4.44E-03
37	GO:0001054: RNA polymerase I activity	5.45E-03
38	GO:0001056: RNA polymerase III activity	5.98E-03
39	GO:0031072: heat shock protein binding	6.54E-03
40	GO:0003887: DNA-directed DNA polymerase activity	8.30E-03
41	GO:0022857: transmembrane transporter activity	8.63E-03
42	GO:0051536: iron-sulfur cluster binding	8.92E-03
43	GO:0004519: endonuclease activity	1.11E-02
44	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.18E-02
45	GO:0005506: iron ion binding	1.41E-02
46	GO:0003713: transcription coactivator activity	1.45E-02
47	GO:0004872: receptor activity	1.60E-02
48	GO:0048038: quinone binding	1.68E-02
49	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.68E-02
50	GO:0008483: transaminase activity	2.01E-02
51	GO:0004806: triglyceride lipase activity	2.45E-02
52	GO:0008236: serine-type peptidase activity	2.55E-02
53	GO:0003729: mRNA binding	2.61E-02
54	GO:0005096: GTPase activator activity	2.73E-02
55	GO:0004497: monooxygenase activity	3.05E-02
56	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.33E-02
57	GO:0004185: serine-type carboxypeptidase activity	3.74E-02
58	GO:0051537: 2 iron, 2 sulfur cluster binding	3.96E-02
59	GO:0035091: phosphatidylinositol binding	3.96E-02
60	GO:0005198: structural molecule activity	4.06E-02
61	GO:0051287: NAD binding	4.29E-02
62	GO:0003924: GTPase activity	4.49E-02
63	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.62E-02
64	GO:0003690: double-stranded DNA binding	4.74E-02
65	GO:0003777: microtubule motor activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	7.45E-08
3	GO:0005845: mRNA cap binding complex	1.71E-04
4	GO:0005846: nuclear cap binding complex	3.87E-04
5	GO:0016605: PML body	6.32E-04
6	GO:0030286: dynein complex	1.20E-03
7	GO:0030140: trans-Golgi network transport vesicle	1.87E-03
8	GO:0009840: chloroplastic endopeptidase Clp complex	2.24E-03
9	GO:0000123: histone acetyltransferase complex	2.64E-03
10	GO:0046930: pore complex	3.50E-03
11	GO:0005811: lipid particle	3.50E-03
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.95E-03
13	GO:0016604: nuclear body	4.44E-03
14	GO:0000419: DNA-directed RNA polymerase V complex	8.30E-03
15	GO:0005875: microtubule associated complex	8.30E-03
16	GO:0042651: thylakoid membrane	9.56E-03
17	GO:0009535: chloroplast thylakoid membrane	1.60E-02
18	GO:0031969: chloroplast membrane	3.05E-02
19	GO:0005819: spindle	3.33E-02
20	GO:0031966: mitochondrial membrane	4.40E-02
21	GO:0043231: intracellular membrane-bounded organelle	4.94E-02