co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G64860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905177: tracheary element differentiation	0.00E+00
2	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:0005980: glycogen catabolic process	0.00E+00
6	GO:0010378: temperature compensation of the circadian clock	0.00E+00
7	GO:0090627: plant epidermal cell differentiation	0.00E+00
8	GO:0009913: epidermal cell differentiation	2.95E-05
9	GO:0009735: response to cytokinin	5.79E-05
10	GO:0032958: inositol phosphate biosynthetic process	1.18E-04
11	GO:0010028: xanthophyll cycle	1.18E-04
12	GO:0000023: maltose metabolic process	1.18E-04
13	GO:0000025: maltose catabolic process	1.18E-04
14	GO:0009817: defense response to fungus, incompatible interaction	1.55E-04
15	GO:0009773: photosynthetic electron transport in photosystem I	1.91E-04
16	GO:0005983: starch catabolic process	2.21E-04
17	GO:0031648: protein destabilization	2.73E-04
18	GO:0016122: xanthophyll metabolic process	2.73E-04
19	GO:0071712: ER-associated misfolded protein catabolic process	2.73E-04
20	GO:0032527: protein exit from endoplasmic reticulum	2.73E-04
21	GO:0005976: polysaccharide metabolic process	2.73E-04
22	GO:1901959: positive regulation of cutin biosynthetic process	2.73E-04
23	GO:0010025: wax biosynthetic process	3.60E-04
24	GO:0080055: low-affinity nitrate transport	4.52E-04
25	GO:0048281: inflorescence morphogenesis	4.52E-04
26	GO:0032940: secretion by cell	4.52E-04
27	GO:1904278: positive regulation of wax biosynthetic process	4.52E-04
28	GO:0010623: programmed cell death involved in cell development	4.52E-04
29	GO:0015979: photosynthesis	6.44E-04
30	GO:0006020: inositol metabolic process	6.47E-04
31	GO:0010148: transpiration	6.47E-04
32	GO:0010731: protein glutathionylation	6.47E-04
33	GO:0010037: response to carbon dioxide	8.60E-04
34	GO:0015976: carbon utilization	8.60E-04
35	GO:0010023: proanthocyanidin biosynthetic process	8.60E-04
36	GO:0015994: chlorophyll metabolic process	8.60E-04
37	GO:0010600: regulation of auxin biosynthetic process	8.60E-04
38	GO:0045723: positive regulation of fatty acid biosynthetic process	8.60E-04
39	GO:0010508: positive regulation of autophagy	8.60E-04
40	GO:2000122: negative regulation of stomatal complex development	8.60E-04
41	GO:0048825: cotyledon development	8.98E-04
42	GO:0048497: maintenance of floral organ identity	1.08E-03
43	GO:0006461: protein complex assembly	1.08E-03
44	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.08E-03
45	GO:0000470: maturation of LSU-rRNA	1.33E-03
46	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.59E-03
47	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.59E-03
48	GO:0010103: stomatal complex morphogenesis	1.87E-03
49	GO:0010161: red light signaling pathway	1.87E-03
50	GO:0070370: cellular heat acclimation	1.87E-03
51	GO:0009704: de-etiolation	2.16E-03
52	GO:0010928: regulation of auxin mediated signaling pathway	2.16E-03
53	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.16E-03
54	GO:0006353: DNA-templated transcription, termination	2.16E-03
55	GO:0009657: plastid organization	2.46E-03
56	GO:0001558: regulation of cell growth	2.46E-03
57	GO:0006783: heme biosynthetic process	2.78E-03
58	GO:0051865: protein autoubiquitination	2.78E-03
59	GO:0005982: starch metabolic process	3.12E-03
60	GO:0042761: very long-chain fatty acid biosynthetic process	3.12E-03
61	GO:0006782: protoporphyrinogen IX biosynthetic process	3.46E-03
62	GO:0010015: root morphogenesis	3.82E-03
63	GO:0009585: red, far-red light phototransduction	3.84E-03
64	GO:0009718: anthocyanin-containing compound biosynthetic process	4.57E-03
65	GO:0006094: gluconeogenesis	4.57E-03
66	GO:0010102: lateral root morphogenesis	4.57E-03
67	GO:0009887: animal organ morphogenesis	4.97E-03
68	GO:0009266: response to temperature stimulus	4.97E-03
69	GO:0010143: cutin biosynthetic process	4.97E-03
70	GO:0009944: polarity specification of adaxial/abaxial axis	6.22E-03
71	GO:0009414: response to water deprivation	6.32E-03
72	GO:0042742: defense response to bacterium	6.55E-03
73	GO:0051302: regulation of cell division	6.66E-03
74	GO:0007017: microtubule-based process	6.66E-03
75	GO:0061077: chaperone-mediated protein folding	7.11E-03
76	GO:0009845: seed germination	7.39E-03
77	GO:0010017: red or far-red light signaling pathway	7.57E-03
78	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.57E-03
79	GO:0001944: vasculature development	8.05E-03
80	GO:0006012: galactose metabolic process	8.05E-03
81	GO:0009686: gibberellin biosynthetic process	8.05E-03
82	GO:0010089: xylem development	8.53E-03
83	GO:0006633: fatty acid biosynthetic process	8.58E-03
84	GO:0007623: circadian rhythm	9.43E-03
85	GO:0000271: polysaccharide biosynthetic process	9.53E-03
86	GO:0042335: cuticle development	9.53E-03
87	GO:0045489: pectin biosynthetic process	1.00E-02
88	GO:0009409: response to cold	1.04E-02
89	GO:0042752: regulation of circadian rhythm	1.06E-02
90	GO:0000302: response to reactive oxygen species	1.16E-02
91	GO:0005975: carbohydrate metabolic process	1.23E-02
92	GO:0071281: cellular response to iron ion	1.28E-02
93	GO:0046686: response to cadmium ion	1.28E-02
94	GO:0009607: response to biotic stimulus	1.57E-02
95	GO:0009627: systemic acquired resistance	1.63E-02
96	GO:0006974: cellular response to DNA damage stimulus	1.63E-02
97	GO:0009723: response to ethylene	1.69E-02
98	GO:0015995: chlorophyll biosynthetic process	1.70E-02
99	GO:0080167: response to karrikin	1.82E-02
100	GO:0010218: response to far red light	1.96E-02
101	GO:0010119: regulation of stomatal movement	2.02E-02
102	GO:0009737: response to abscisic acid	2.05E-02
103	GO:0016051: carbohydrate biosynthetic process	2.16E-02
104	GO:0009637: response to blue light	2.16E-02
105	GO:0034599: cellular response to oxidative stress	2.23E-02
106	GO:0006869: lipid transport	2.39E-02
107	GO:0006631: fatty acid metabolic process	2.44E-02
108	GO:0042542: response to hydrogen peroxide	2.51E-02
109	GO:0071555: cell wall organization	2.60E-02
110	GO:0016042: lipid catabolic process	2.61E-02
111	GO:0000209: protein polyubiquitination	2.66E-02
112	GO:0006629: lipid metabolic process	2.68E-02
113	GO:0009408: response to heat	2.68E-02
114	GO:0009644: response to high light intensity	2.73E-02
115	GO:0009636: response to toxic substance	2.81E-02
116	GO:0009965: leaf morphogenesis	2.81E-02
117	GO:0006855: drug transmembrane transport	2.88E-02
118	GO:0008152: metabolic process	2.96E-02
119	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.96E-02
120	GO:0009664: plant-type cell wall organization	3.04E-02
121	GO:0042538: hyperosmotic salinity response	3.04E-02
122	GO:0006857: oligopeptide transport	3.36E-02
123	GO:0009873: ethylene-activated signaling pathway	3.46E-02
124	GO:0006096: glycolytic process	3.60E-02
125	GO:0009740: gibberellic acid mediated signaling pathway	3.94E-02
126	GO:0009651: response to salt stress	3.98E-02
127	GO:0006355: regulation of transcription, DNA-templated	4.30E-02
128	GO:0009058: biosynthetic process	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0009899: ent-kaurene synthase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0008184: glycogen phosphorylase activity	0.00E+00
4	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
5	GO:0004645: phosphorylase activity	0.00E+00
6	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.18E-04
7	GO:0000829: inositol heptakisphosphate kinase activity	1.18E-04
8	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.18E-04
9	GO:0000828: inositol hexakisphosphate kinase activity	1.18E-04
10	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.18E-04
11	GO:0004853: uroporphyrinogen decarboxylase activity	1.18E-04
12	GO:0004134: 4-alpha-glucanotransferase activity	1.18E-04
13	GO:0019203: carbohydrate phosphatase activity	1.18E-04
14	GO:0047372: acylglycerol lipase activity	1.91E-04
15	GO:0044390: ubiquitin-like protein conjugating enzyme binding	2.73E-04
16	GO:0016868: intramolecular transferase activity, phosphotransferases	2.73E-04
17	GO:0010297: heteropolysaccharide binding	2.73E-04
18	GO:0050736: O-malonyltransferase activity	2.73E-04
19	GO:0018708: thiol S-methyltransferase activity	2.73E-04
20	GO:0045174: glutathione dehydrogenase (ascorbate) activity	4.52E-04
21	GO:0080054: low-affinity nitrate transmembrane transporter activity	4.52E-04
22	GO:0004324: ferredoxin-NADP+ reductase activity	4.52E-04
23	GO:0050734: hydroxycinnamoyltransferase activity	4.52E-04
24	GO:0042277: peptide binding	8.60E-04
25	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	8.60E-04
26	GO:0019199: transmembrane receptor protein kinase activity	8.60E-04
27	GO:0003959: NADPH dehydrogenase activity	1.08E-03
28	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.08E-03
29	GO:2001070: starch binding	1.33E-03
30	GO:0004332: fructose-bisphosphate aldolase activity	1.33E-03
31	GO:0004130: cytochrome-c peroxidase activity	1.33E-03
32	GO:0004602: glutathione peroxidase activity	1.59E-03
33	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.86E-03
34	GO:0004034: aldose 1-epimerase activity	2.16E-03
35	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	2.78E-03
36	GO:0051537: 2 iron, 2 sulfur cluster binding	3.09E-03
37	GO:0044183: protein binding involved in protein folding	3.82E-03
38	GO:0000976: transcription regulatory region sequence-specific DNA binding	4.19E-03
39	GO:0004089: carbonate dehydratase activity	4.57E-03
40	GO:0004565: beta-galactosidase activity	4.57E-03
41	GO:0008266: poly(U) RNA binding	4.97E-03
42	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	5.79E-03
43	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	5.79E-03
44	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	5.79E-03
45	GO:0019843: rRNA binding	6.83E-03
46	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	7.57E-03
47	GO:0030170: pyridoxal phosphate binding	7.58E-03
48	GO:0008289: lipid binding	7.82E-03
49	GO:0030570: pectate lyase activity	8.05E-03
50	GO:0043565: sequence-specific DNA binding	9.12E-03
51	GO:0016491: oxidoreductase activity	9.94E-03
52	GO:0001085: RNA polymerase II transcription factor binding	1.00E-02
53	GO:0016853: isomerase activity	1.06E-02
54	GO:0004842: ubiquitin-protein transferase activity	1.07E-02
55	GO:0048038: quinone binding	1.16E-02
56	GO:0016740: transferase activity	1.37E-02
57	GO:0005200: structural constituent of cytoskeleton	1.39E-02
58	GO:0016788: hydrolase activity, acting on ester bonds	1.49E-02
59	GO:0030247: polysaccharide binding	1.70E-02
60	GO:0052689: carboxylic ester hydrolase activity	2.01E-02
61	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.02E-02
62	GO:0004364: glutathione transferase activity	2.51E-02
63	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.61E-02
64	GO:0003924: GTPase activity	2.68E-02
65	GO:0043621: protein self-association	2.73E-02
66	GO:0031625: ubiquitin protein ligase binding	3.44E-02
67	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.68E-02
68	GO:0004650: polygalacturonase activity	3.85E-02
69	GO:0016757: transferase activity, transferring glycosyl groups	4.06E-02
70	GO:0016746: transferase activity, transferring acyl groups	4.19E-02
71	GO:0016758: transferase activity, transferring hexosyl groups	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	2.19E-11
2	GO:0009507: chloroplast	8.68E-10
3	GO:0009535: chloroplast thylakoid membrane	2.30E-09
4	GO:0009534: chloroplast thylakoid	1.24E-06
5	GO:0009941: chloroplast envelope	1.34E-06
6	GO:0009579: thylakoid	1.36E-05
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.14E-04
8	GO:0030093: chloroplast photosystem I	2.73E-04
9	GO:0031977: thylakoid lumen	2.74E-04
10	GO:0030095: chloroplast photosystem II	2.87E-04
11	GO:0036513: Derlin-1 retrotranslocation complex	6.47E-04
12	GO:0009543: chloroplast thylakoid lumen	9.26E-04
13	GO:0009533: chloroplast stromal thylakoid	1.87E-03
14	GO:0009538: photosystem I reaction center	2.16E-03
15	GO:0045298: tubulin complex	2.78E-03
16	GO:0009508: plastid chromosome	4.57E-03
17	GO:0048046: apoplast	4.69E-03
18	GO:0010287: plastoglobule	6.47E-03
19	GO:0009523: photosystem II	1.11E-02
20	GO:0010319: stromule	1.39E-02
21	GO:0009295: nucleoid	1.39E-02
22	GO:0005667: transcription factor complex	1.63E-02
23	GO:0015934: large ribosomal subunit	2.02E-02
24	GO:0005840: ribosome	2.75E-02
25	GO:0009505: plant-type cell wall	3.44E-02
26	GO:0005834: heterotrimeric G-protein complex	3.77E-02
27	GO:0005654: nucleoplasm	4.73E-02
28	GO:0016020: membrane	4.90E-02