Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G64840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015843: methylammonium transport0.00E+00
2GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0098586: cellular response to virus0.00E+00
5GO:0090470: shoot organ boundary specification0.00E+00
6GO:0017009: protein-phycocyanobilin linkage0.00E+00
7GO:0046677: response to antibiotic0.00E+00
8GO:0015882: L-ascorbic acid transport0.00E+00
9GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
10GO:0009661: chromoplast organization0.00E+00
11GO:0010243: response to organonitrogen compound0.00E+00
12GO:0005997: xylulose metabolic process0.00E+00
13GO:0018298: protein-chromophore linkage1.56E-06
14GO:0080005: photosystem stoichiometry adjustment2.10E-06
15GO:0000256: allantoin catabolic process2.10E-06
16GO:0010136: ureide catabolic process7.70E-06
17GO:0007623: circadian rhythm8.63E-06
18GO:0006145: purine nucleobase catabolic process1.76E-05
19GO:2001141: regulation of RNA biosynthetic process1.76E-05
20GO:0015995: chlorophyll biosynthetic process2.99E-05
21GO:0010207: photosystem II assembly3.01E-05
22GO:0071483: cellular response to blue light3.23E-05
23GO:0009902: chloroplast relocation3.23E-05
24GO:0010021: amylopectin biosynthetic process3.23E-05
25GO:0009644: response to high light intensity1.07E-04
26GO:0019252: starch biosynthetic process1.79E-04
27GO:0010028: xanthophyll cycle2.11E-04
28GO:0010362: negative regulation of anion channel activity by blue light2.11E-04
29GO:0031426: polycistronic mRNA processing2.11E-04
30GO:0051775: response to redox state2.11E-04
31GO:0071277: cellular response to calcium ion2.11E-04
32GO:0071461: cellular response to redox state2.11E-04
33GO:0009658: chloroplast organization2.34E-04
34GO:0055114: oxidation-reduction process2.95E-04
35GO:0006352: DNA-templated transcription, initiation4.36E-04
36GO:0015979: photosynthesis4.49E-04
37GO:0016122: xanthophyll metabolic process4.71E-04
38GO:0042754: negative regulation of circadian rhythm4.71E-04
39GO:0046741: transport of virus in host, tissue to tissue4.71E-04
40GO:0042853: L-alanine catabolic process4.71E-04
41GO:0009915: phloem sucrose loading4.71E-04
42GO:0043496: regulation of protein homodimerization activity4.71E-04
43GO:0042548: regulation of photosynthesis, light reaction4.71E-04
44GO:0006898: receptor-mediated endocytosis4.71E-04
45GO:0050992: dimethylallyl diphosphate biosynthetic process4.71E-04
46GO:1904143: positive regulation of carotenoid biosynthetic process4.71E-04
47GO:0042550: photosystem I stabilization4.71E-04
48GO:0009767: photosynthetic electron transport chain5.67E-04
49GO:0009853: photorespiration6.24E-04
50GO:0009637: response to blue light6.24E-04
51GO:0005977: glycogen metabolic process7.67E-04
52GO:0006833: water transport7.93E-04
53GO:0010114: response to red light8.58E-04
54GO:0009768: photosynthesis, light harvesting in photosystem I9.63E-04
55GO:0010371: regulation of gibberellin biosynthetic process1.09E-03
56GO:0006166: purine ribonucleoside salvage1.09E-03
57GO:0071484: cellular response to light intensity1.09E-03
58GO:0046653: tetrahydrofolate metabolic process1.09E-03
59GO:0006107: oxaloacetate metabolic process1.09E-03
60GO:0010239: chloroplast mRNA processing1.09E-03
61GO:0015696: ammonium transport1.09E-03
62GO:0006168: adenine salvage1.09E-03
63GO:0043572: plastid fission1.09E-03
64GO:0015994: chlorophyll metabolic process1.45E-03
65GO:0072488: ammonium transmembrane transport1.45E-03
66GO:0006734: NADH metabolic process1.45E-03
67GO:0034220: ion transmembrane transport1.58E-03
68GO:0044209: AMP salvage1.85E-03
69GO:0016120: carotene biosynthetic process1.85E-03
70GO:0010117: photoprotection1.85E-03
71GO:0009904: chloroplast accumulation movement1.85E-03
72GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.28E-03
73GO:0010190: cytochrome b6f complex assembly2.28E-03
74GO:0009643: photosynthetic acclimation2.28E-03
75GO:0071805: potassium ion transmembrane transport2.70E-03
76GO:0009648: photoperiodism2.74E-03
77GO:0071470: cellular response to osmotic stress2.74E-03
78GO:0009903: chloroplast avoidance movement2.74E-03
79GO:0010189: vitamin E biosynthetic process2.74E-03
80GO:0048528: post-embryonic root development3.23E-03
81GO:0009645: response to low light intensity stimulus3.23E-03
82GO:0009642: response to light intensity3.74E-03
83GO:0019375: galactolipid biosynthetic process3.74E-03
84GO:0009704: de-etiolation3.74E-03
85GO:0050821: protein stabilization3.74E-03
86GO:0009932: cell tip growth4.29E-03
87GO:0071482: cellular response to light stimulus4.29E-03
88GO:0009657: plastid organization4.29E-03
89GO:0048574: long-day photoperiodism, flowering4.29E-03
90GO:0010100: negative regulation of photomorphogenesis4.29E-03
91GO:0006811: ion transport4.35E-03
92GO:0010218: response to far red light4.35E-03
93GO:0010468: regulation of gene expression4.84E-03
94GO:0098656: anion transmembrane transport4.85E-03
95GO:0009821: alkaloid biosynthetic process4.85E-03
96GO:0034765: regulation of ion transmembrane transport4.85E-03
97GO:0048507: meristem development4.85E-03
98GO:0090333: regulation of stomatal closure4.85E-03
99GO:0006783: heme biosynthetic process4.85E-03
100GO:0006754: ATP biosynthetic process4.85E-03
101GO:0034599: cellular response to oxidative stress5.21E-03
102GO:0009638: phototropism5.44E-03
103GO:0006779: porphyrin-containing compound biosynthetic process5.44E-03
104GO:0009641: shade avoidance6.06E-03
105GO:0006259: DNA metabolic process6.06E-03
106GO:0009970: cellular response to sulfate starvation6.06E-03
107GO:0006782: protoporphyrinogen IX biosynthetic process6.06E-03
108GO:0006995: cellular response to nitrogen starvation6.06E-03
109GO:0009773: photosynthetic electron transport in photosystem I6.69E-03
110GO:0006265: DNA topological change6.69E-03
111GO:0008285: negative regulation of cell proliferation6.69E-03
112GO:0016485: protein processing6.69E-03
113GO:0009416: response to light stimulus7.80E-03
114GO:0005986: sucrose biosynthetic process8.04E-03
115GO:0006829: zinc II ion transport8.04E-03
116GO:0006108: malate metabolic process8.04E-03
117GO:0009266: response to temperature stimulus8.75E-03
118GO:0010020: chloroplast fission8.75E-03
119GO:0007015: actin filament organization8.75E-03
120GO:0010223: secondary shoot formation8.75E-03
121GO:0045893: positive regulation of transcription, DNA-templated9.62E-03
122GO:0006071: glycerol metabolic process1.02E-02
123GO:0045454: cell redox homeostasis1.12E-02
124GO:0051302: regulation of cell division1.18E-02
125GO:0010073: meristem maintenance1.18E-02
126GO:0006825: copper ion transport1.18E-02
127GO:0009624: response to nematode1.24E-02
128GO:0031408: oxylipin biosynthetic process1.26E-02
129GO:0006366: transcription from RNA polymerase II promoter1.26E-02
130GO:0006810: transport1.30E-02
131GO:0019748: secondary metabolic process1.34E-02
132GO:0035428: hexose transmembrane transport1.34E-02
133GO:0010227: floral organ abscission1.43E-02
134GO:0009306: protein secretion1.52E-02
135GO:0009058: biosynthetic process1.64E-02
136GO:0010118: stomatal movement1.70E-02
137GO:0006606: protein import into nucleus1.70E-02
138GO:0042335: cuticle development1.70E-02
139GO:0042391: regulation of membrane potential1.70E-02
140GO:0006662: glycerol ether metabolic process1.79E-02
141GO:0010182: sugar mediated signaling pathway1.79E-02
142GO:0046323: glucose import1.79E-02
143GO:0007059: chromosome segregation1.88E-02
144GO:0009791: post-embryonic development1.98E-02
145GO:0006413: translational initiation2.00E-02
146GO:0000302: response to reactive oxygen species2.08E-02
147GO:0009737: response to abscisic acid2.44E-02
148GO:0009735: response to cytokinin2.68E-02
149GO:0035556: intracellular signal transduction3.20E-02
150GO:0008219: cell death3.27E-02
151GO:0000160: phosphorelay signal transduction system3.38E-02
152GO:0009409: response to cold3.52E-02
153GO:0007568: aging3.62E-02
154GO:0006865: amino acid transport3.74E-02
155GO:0009867: jasmonic acid mediated signaling pathway3.86E-02
156GO:0006099: tricarboxylic acid cycle3.99E-02
157GO:0055085: transmembrane transport4.02E-02
158GO:0006457: protein folding4.12E-02
159GO:0046686: response to cadmium ion4.30E-02
160GO:0006631: fatty acid metabolic process4.37E-02
161GO:0046777: protein autophosphorylation4.39E-02
162GO:0042542: response to hydrogen peroxide4.50E-02
163GO:0009640: photomorphogenesis4.63E-02
RankGO TermAdjusted P value
1GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
2GO:0050281: serine-glyoxylate transaminase activity0.00E+00
3GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
4GO:0022883: zinc efflux transmembrane transporter activity0.00E+00
5GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
6GO:0009976: tocopherol cyclase activity0.00E+00
7GO:0008115: sarcosine oxidase activity0.00E+00
8GO:0004760: serine-pyruvate transaminase activity0.00E+00
9GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
10GO:0015229: L-ascorbic acid transporter activity0.00E+00
11GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity0.00E+00
12GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
13GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
14GO:0004373: glycogen (starch) synthase activity7.70E-06
15GO:0003913: DNA photolyase activity7.70E-06
16GO:0019904: protein domain specific binding1.56E-05
17GO:0001053: plastid sigma factor activity3.23E-05
18GO:0008453: alanine-glyoxylate transaminase activity3.23E-05
19GO:0016987: sigma factor activity3.23E-05
20GO:0009011: starch synthase activity3.23E-05
21GO:0000293: ferric-chelate reductase activity7.64E-05
22GO:0035671: enone reductase activity2.11E-04
23GO:0046480: galactolipid galactosyltransferase activity2.11E-04
24GO:0047958: glycine:2-oxoglutarate aminotransferase activity2.11E-04
25GO:0004856: xylulokinase activity2.11E-04
26GO:0004008: copper-exporting ATPase activity2.11E-04
27GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity2.11E-04
28GO:0046481: digalactosyldiacylglycerol synthase activity2.11E-04
29GO:0008746: NAD(P)+ transhydrogenase activity2.11E-04
30GO:0016168: chlorophyll binding3.51E-04
31GO:0033201: alpha-1,4-glucan synthase activity4.71E-04
32GO:0015173: aromatic amino acid transmembrane transporter activity4.71E-04
33GO:0019156: isoamylase activity4.71E-04
34GO:0008883: glutamyl-tRNA reductase activity4.71E-04
35GO:0004180: carboxypeptidase activity7.67E-04
36GO:0010277: chlorophyllide a oxygenase [overall] activity7.67E-04
37GO:0004848: ureidoglycolate hydrolase activity7.67E-04
38GO:0004148: dihydrolipoyl dehydrogenase activity7.67E-04
39GO:0003955: NAD(P)H dehydrogenase (quinone) activity7.67E-04
40GO:0050307: sucrose-phosphate phosphatase activity7.67E-04
41GO:0030267: glyoxylate reductase (NADP) activity7.67E-04
42GO:0004096: catalase activity7.67E-04
43GO:0031409: pigment binding7.93E-04
44GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.09E-03
45GO:0015175: neutral amino acid transmembrane transporter activity1.09E-03
46GO:0048027: mRNA 5'-UTR binding1.09E-03
47GO:0035250: UDP-galactosyltransferase activity1.09E-03
48GO:0003999: adenine phosphoribosyltransferase activity1.09E-03
49GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.09E-03
50GO:0016851: magnesium chelatase activity1.09E-03
51GO:0009882: blue light photoreceptor activity1.09E-03
52GO:0016887: ATPase activity1.52E-03
53GO:0016853: isomerase activity1.83E-03
54GO:0010181: FMN binding1.83E-03
55GO:0016773: phosphotransferase activity, alcohol group as acceptor1.85E-03
56GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen1.85E-03
57GO:0051538: 3 iron, 4 sulfur cluster binding1.85E-03
58GO:0004709: MAP kinase kinase kinase activity2.28E-03
59GO:0004556: alpha-amylase activity2.28E-03
60GO:0016615: malate dehydrogenase activity2.28E-03
61GO:0008519: ammonium transmembrane transporter activity2.28E-03
62GO:0008237: metallopeptidase activity2.70E-03
63GO:0005242: inward rectifier potassium channel activity2.74E-03
64GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.74E-03
65GO:0030060: L-malate dehydrogenase activity2.74E-03
66GO:0015250: water channel activity3.03E-03
67GO:0009881: photoreceptor activity3.23E-03
68GO:0016491: oxidoreductase activity3.24E-03
69GO:0005375: copper ion transmembrane transporter activity4.29E-03
70GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity4.29E-03
71GO:0050897: cobalt ion binding4.55E-03
72GO:0008889: glycerophosphodiester phosphodiesterase activity4.85E-03
73GO:0000989: transcription factor activity, transcription factor binding4.85E-03
74GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism4.85E-03
75GO:0045309: protein phosphorylated amino acid binding5.44E-03
76GO:0016844: strictosidine synthase activity5.44E-03
77GO:0000155: phosphorelay sensor kinase activity8.04E-03
78GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism8.04E-03
79GO:0005315: inorganic phosphate transmembrane transporter activity8.04E-03
80GO:0031072: heat shock protein binding8.04E-03
81GO:0003899: DNA-directed 5'-3' RNA polymerase activity8.67E-03
82GO:0001046: core promoter sequence-specific DNA binding1.10E-02
83GO:0015079: potassium ion transmembrane transporter activity1.18E-02
84GO:0004176: ATP-dependent peptidase activity1.26E-02
85GO:0022891: substrate-specific transmembrane transporter activity1.43E-02
86GO:0008514: organic anion transmembrane transporter activity1.52E-02
87GO:0003727: single-stranded RNA binding1.52E-02
88GO:0047134: protein-disulfide reductase activity1.61E-02
89GO:0005249: voltage-gated potassium channel activity1.70E-02
90GO:0030551: cyclic nucleotide binding1.70E-02
91GO:0008080: N-acetyltransferase activity1.79E-02
92GO:0008565: protein transporter activity1.86E-02
93GO:0004791: thioredoxin-disulfide reductase activity1.88E-02
94GO:0005355: glucose transmembrane transporter activity1.88E-02
95GO:0048038: quinone binding2.08E-02
96GO:0005506: iron ion binding2.20E-02
97GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.28E-02
98GO:0046872: metal ion binding2.33E-02
99GO:0016791: phosphatase activity2.38E-02
100GO:0005515: protein binding2.64E-02
101GO:0042802: identical protein binding2.73E-02
102GO:0004721: phosphoprotein phosphatase activity3.04E-02
103GO:0008236: serine-type peptidase activity3.15E-02
104GO:0004222: metalloendopeptidase activity3.50E-02
105GO:0030145: manganese ion binding3.62E-02
106GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.62E-02
107GO:0004712: protein serine/threonine/tyrosine kinase activity4.11E-02
108GO:0050661: NADP binding4.24E-02
109GO:0004185: serine-type carboxypeptidase activity4.63E-02
110GO:0051537: 2 iron, 2 sulfur cluster binding4.89E-02
111GO:0043621: protein self-association4.89E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast2.57E-29
2GO:0009535: chloroplast thylakoid membrane2.16E-15
3GO:0009941: chloroplast envelope1.43E-09
4GO:0009534: chloroplast thylakoid2.39E-08
5GO:0009570: chloroplast stroma6.80E-07
6GO:0010287: plastoglobule4.19E-05
7GO:0009782: photosystem I antenna complex2.11E-04
8GO:0009706: chloroplast inner membrane2.87E-04
9GO:0031969: chloroplast membrane3.52E-04
10GO:0009707: chloroplast outer membrane4.62E-04
11GO:0045254: pyruvate dehydrogenase complex4.71E-04
12GO:0009569: chloroplast starch grain4.71E-04
13GO:0009579: thylakoid6.65E-04
14GO:0010007: magnesium chelatase complex7.67E-04
15GO:0033281: TAT protein transport complex7.67E-04
16GO:0042651: thylakoid membrane9.63E-04
17GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)1.45E-03
18GO:0009523: photosystem II1.97E-03
19GO:0005777: peroxisome2.46E-03
20GO:0010319: stromule2.70E-03
21GO:0009501: amyloplast3.74E-03
22GO:0031982: vesicle3.74E-03
23GO:0009514: glyoxysome4.29E-03
24GO:0042644: chloroplast nucleoid4.85E-03
25GO:0005887: integral component of plasma membrane5.20E-03
26GO:0031977: thylakoid lumen5.93E-03
27GO:0030076: light-harvesting complex9.48E-03
28GO:0043234: protein complex1.02E-02
29GO:0005747: mitochondrial respiratory chain complex I1.06E-02
30GO:0009654: photosystem II oxygen evolving complex1.18E-02
31GO:0045271: respiratory chain complex I1.18E-02
32GO:0005739: mitochondrion1.19E-02
33GO:0009532: plastid stroma1.26E-02
34GO:0009522: photosystem I1.88E-02
35GO:0005759: mitochondrial matrix1.95E-02
36GO:0019898: extrinsic component of membrane1.98E-02
37GO:0009295: nucleoid2.49E-02
38GO:0005778: peroxisomal membrane2.49E-02
39GO:0009506: plasmodesma2.69E-02
40GO:0009536: plastid3.05E-02
41GO:0016020: membrane3.82E-02
42GO:0016021: integral component of membrane4.53E-02
43GO:0005773: vacuole4.63E-02
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Gene type



Gene DE type