co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G64370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015833: peptide transport	0.00E+00
2	GO:0042430: indole-containing compound metabolic process	0.00E+00
3	GO:0009398: FMN biosynthetic process	0.00E+00
4	GO:0023052: signaling	0.00E+00
5	GO:1903647: negative regulation of chlorophyll catabolic process	0.00E+00
6	GO:0042362: fat-soluble vitamin biosynthetic process	0.00E+00
7	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
8	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
9	GO:0001881: receptor recycling	0.00E+00
10	GO:0006592: ornithine biosynthetic process	0.00E+00
11	GO:0006593: ornithine catabolic process	0.00E+00
12	GO:0071284: cellular response to lead ion	0.00E+00
13	GO:0006511: ubiquitin-dependent protein catabolic process	3.12E-18
14	GO:0051603: proteolysis involved in cellular protein catabolic process	5.48E-11
15	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	9.77E-05
16	GO:0031468: nuclear envelope reassembly	2.46E-04
17	GO:0010265: SCF complex assembly	2.46E-04
18	GO:0019544: arginine catabolic process to glutamate	2.46E-04
19	GO:0061014: positive regulation of mRNA catabolic process	2.46E-04
20	GO:0015798: myo-inositol transport	2.46E-04
21	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	2.46E-04
22	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	2.46E-04
23	GO:0055047: generative cell mitosis	2.46E-04
24	GO:0009651: response to salt stress	5.33E-04
25	GO:0009915: phloem sucrose loading	5.44E-04
26	GO:0042939: tripeptide transport	5.44E-04
27	GO:0051788: response to misfolded protein	5.44E-04
28	GO:0043132: NAD transport	5.44E-04
29	GO:0046939: nucleotide phosphorylation	5.44E-04
30	GO:0009817: defense response to fungus, incompatible interaction	6.09E-04
31	GO:0046686: response to cadmium ion	6.90E-04
32	GO:0010043: response to zinc ion	7.31E-04
33	GO:0007030: Golgi organization	8.79E-04
34	GO:0008333: endosome to lysosome transport	8.83E-04
35	GO:0051646: mitochondrion localization	8.83E-04
36	GO:0043617: cellular response to sucrose starvation	8.83E-04
37	GO:0044375: regulation of peroxisome size	8.83E-04
38	GO:0045793: positive regulation of cell size	8.83E-04
39	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	8.83E-04
40	GO:0044746: amino acid transmembrane export	8.83E-04
41	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.11E-03
42	GO:0009647: skotomorphogenesis	1.26E-03
43	GO:0010587: miRNA catabolic process	1.26E-03
44	GO:1901332: negative regulation of lateral root development	1.26E-03
45	GO:0015858: nucleoside transport	1.26E-03
46	GO:0006168: adenine salvage	1.26E-03
47	GO:0001676: long-chain fatty acid metabolic process	1.26E-03
48	GO:0032877: positive regulation of DNA endoreduplication	1.26E-03
49	GO:0046836: glycolipid transport	1.26E-03
50	GO:0051259: protein oligomerization	1.26E-03
51	GO:0006166: purine ribonucleoside salvage	1.26E-03
52	GO:0030433: ubiquitin-dependent ERAD pathway	1.42E-03
53	GO:0071219: cellular response to molecule of bacterial origin	1.68E-03
54	GO:0010363: regulation of plant-type hypersensitive response	1.68E-03
55	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	1.68E-03
56	GO:0080142: regulation of salicylic acid biosynthetic process	1.68E-03
57	GO:0042938: dipeptide transport	1.68E-03
58	GO:0051781: positive regulation of cell division	1.68E-03
59	GO:0010387: COP9 signalosome assembly	1.68E-03
60	GO:0006096: glycolytic process	2.02E-03
61	GO:0006662: glycerol ether metabolic process	2.12E-03
62	GO:0098719: sodium ion import across plasma membrane	2.15E-03
63	GO:0006564: L-serine biosynthetic process	2.15E-03
64	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.15E-03
65	GO:0009229: thiamine diphosphate biosynthetic process	2.15E-03
66	GO:0044209: AMP salvage	2.15E-03
67	GO:0045116: protein neddylation	2.15E-03
68	GO:0009697: salicylic acid biosynthetic process	2.15E-03
69	GO:0048831: regulation of shoot system development	2.65E-03
70	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.65E-03
71	GO:0009228: thiamine biosynthetic process	2.65E-03
72	GO:0006561: proline biosynthetic process	2.65E-03
73	GO:0043248: proteasome assembly	2.65E-03
74	GO:0042732: D-xylose metabolic process	2.65E-03
75	GO:0030163: protein catabolic process	2.97E-03
76	GO:0009612: response to mechanical stimulus	3.18E-03
77	GO:0010189: vitamin E biosynthetic process	3.18E-03
78	GO:0009554: megasporogenesis	3.18E-03
79	GO:0010286: heat acclimation	3.35E-03
80	GO:0055114: oxidation-reduction process	3.47E-03
81	GO:0070370: cellular heat acclimation	3.75E-03
82	GO:0000338: protein deneddylation	3.75E-03
83	GO:0010044: response to aluminum ion	3.75E-03
84	GO:0009610: response to symbiotic fungus	3.75E-03
85	GO:0080027: response to herbivore	3.75E-03
86	GO:0048528: post-embryonic root development	3.75E-03
87	GO:0071446: cellular response to salicylic acid stimulus	3.75E-03
88	GO:0009615: response to virus	3.76E-03
89	GO:0009816: defense response to bacterium, incompatible interaction	3.98E-03
90	GO:0009627: systemic acquired resistance	4.20E-03
91	GO:0006402: mRNA catabolic process	4.35E-03
92	GO:0009690: cytokinin metabolic process	4.35E-03
93	GO:0006506: GPI anchor biosynthetic process	4.35E-03
94	GO:0031540: regulation of anthocyanin biosynthetic process	4.35E-03
95	GO:0040029: regulation of gene expression, epigenetic	4.35E-03
96	GO:0009231: riboflavin biosynthetic process	4.35E-03
97	GO:0006102: isocitrate metabolic process	4.35E-03
98	GO:0006526: arginine biosynthetic process	4.98E-03
99	GO:0006972: hyperosmotic response	4.98E-03
100	GO:0006002: fructose 6-phosphate metabolic process	4.98E-03
101	GO:0015996: chlorophyll catabolic process	4.98E-03
102	GO:0006098: pentose-phosphate shunt	5.65E-03
103	GO:0080144: amino acid homeostasis	5.65E-03
104	GO:0010112: regulation of systemic acquired resistance	5.65E-03
105	GO:0046685: response to arsenic-containing substance	5.65E-03
106	GO:0009821: alkaloid biosynthetic process	5.65E-03
107	GO:0006810: transport	6.20E-03
108	GO:0009853: photorespiration	6.21E-03
109	GO:0051453: regulation of intracellular pH	6.33E-03
110	GO:1900426: positive regulation of defense response to bacterium	6.33E-03
111	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	6.33E-03
112	GO:0034599: cellular response to oxidative stress	6.50E-03
113	GO:0006099: tricarboxylic acid cycle	6.50E-03
114	GO:0000103: sulfate assimilation	7.06E-03
115	GO:0043069: negative regulation of programmed cell death	7.06E-03
116	GO:0006631: fatty acid metabolic process	7.39E-03
117	GO:0072593: reactive oxygen species metabolic process	7.80E-03
118	GO:0010015: root morphogenesis	7.80E-03
119	GO:0016925: protein sumoylation	8.58E-03
120	GO:0009691: cytokinin biosynthetic process	9.38E-03
121	GO:0006094: gluconeogenesis	9.38E-03
122	GO:0007034: vacuolar transport	1.02E-02
123	GO:0002237: response to molecule of bacterial origin	1.02E-02
124	GO:0009266: response to temperature stimulus	1.02E-02
125	GO:0009723: response to ethylene	1.07E-02
126	GO:0010053: root epidermal cell differentiation	1.11E-02
127	GO:0006636: unsaturated fatty acid biosynthetic process	1.20E-02
128	GO:0006338: chromatin remodeling	1.29E-02
129	GO:0006289: nucleotide-excision repair	1.29E-02
130	GO:0006487: protein N-linked glycosylation	1.29E-02
131	GO:0009116: nucleoside metabolic process	1.29E-02
132	GO:0048316: seed development	1.32E-02
133	GO:0009626: plant-type hypersensitive response	1.37E-02
134	GO:0009695: jasmonic acid biosynthetic process	1.38E-02
135	GO:0031408: oxylipin biosynthetic process	1.47E-02
136	GO:0003333: amino acid transmembrane transport	1.47E-02
137	GO:0015992: proton transport	1.47E-02
138	GO:0048511: rhythmic process	1.47E-02
139	GO:0061077: chaperone-mediated protein folding	1.47E-02
140	GO:0045454: cell redox homeostasis	1.48E-02
141	GO:0035428: hexose transmembrane transport	1.57E-02
142	GO:0019748: secondary metabolic process	1.57E-02
143	GO:0001944: vasculature development	1.67E-02
144	GO:0042147: retrograde transport, endosome to Golgi	1.88E-02
145	GO:0034220: ion transmembrane transport	1.99E-02
146	GO:0010051: xylem and phloem pattern formation	1.99E-02
147	GO:0010118: stomatal movement	1.99E-02
148	GO:0015991: ATP hydrolysis coupled proton transport	1.99E-02
149	GO:0010154: fruit development	2.09E-02
150	GO:0010197: polar nucleus fusion	2.09E-02
151	GO:0046323: glucose import	2.09E-02
152	GO:0015986: ATP synthesis coupled proton transport	2.21E-02
153	GO:0061025: membrane fusion	2.21E-02
154	GO:0006814: sodium ion transport	2.21E-02
155	GO:0042744: hydrogen peroxide catabolic process	2.21E-02
156	GO:0009646: response to absence of light	2.21E-02
157	GO:0006623: protein targeting to vacuole	2.32E-02
158	GO:0048825: cotyledon development	2.32E-02
159	GO:0080156: mitochondrial mRNA modification	2.43E-02
160	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.43E-02
161	GO:0002229: defense response to oomycetes	2.43E-02
162	GO:0010193: response to ozone	2.43E-02
163	GO:0006635: fatty acid beta-oxidation	2.43E-02
164	GO:0009630: gravitropism	2.55E-02
165	GO:0006914: autophagy	2.79E-02
166	GO:0071805: potassium ion transmembrane transport	2.91E-02
167	GO:0016579: protein deubiquitination	3.04E-02
168	GO:0000910: cytokinesis	3.04E-02
169	GO:0042742: defense response to bacterium	3.12E-02
170	GO:0009735: response to cytokinin	3.52E-02
171	GO:0006950: response to stress	3.55E-02
172	GO:0009733: response to auxin	3.69E-02
173	GO:0008219: cell death	3.82E-02
174	GO:0009832: plant-type cell wall biogenesis	3.96E-02
175	GO:0010311: lateral root formation	3.96E-02
176	GO:0009826: unidimensional cell growth	3.98E-02
177	GO:0006811: ion transport	4.10E-02
178	GO:0006499: N-terminal protein myristoylation	4.10E-02
179	GO:0006865: amino acid transport	4.38E-02
180	GO:0045087: innate immune response	4.52E-02
181	GO:0009409: response to cold	4.83E-02
182	GO:0006839: mitochondrial transport	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0009045: xylose isomerase activity	0.00E+00
2	GO:0032441: pheophorbide a oxygenase activity	0.00E+00
3	GO:0050334: thiaminase activity	0.00E+00
4	GO:0015197: peptide transporter activity	0.00E+00
5	GO:0010176: homogentisate phytyltransferase activity	0.00E+00
6	GO:0015334: high-affinity oligopeptide transporter activity	0.00E+00
7	GO:0044610: FMN transmembrane transporter activity	0.00E+00
8	GO:0008777: acetylornithine deacetylase activity	0.00E+00
9	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
10	GO:0004587: ornithine-oxo-acid transaminase activity	0.00E+00
11	GO:0008531: riboflavin kinase activity	0.00E+00
12	GO:0016881: acid-amino acid ligase activity	0.00E+00
13	GO:0004298: threonine-type endopeptidase activity	2.45E-27
14	GO:0008233: peptidase activity	1.55E-17
15	GO:0004557: alpha-galactosidase activity	1.02E-05
16	GO:0052692: raffinose alpha-galactosidase activity	1.02E-05
17	GO:0043130: ubiquitin binding	7.15E-05
18	GO:0036402: proteasome-activating ATPase activity	9.77E-05
19	GO:0031593: polyubiquitin binding	9.77E-05
20	GO:0070401: NADP+ binding	2.46E-04
21	GO:0004321: fatty-acyl-CoA synthase activity	2.46E-04
22	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	2.46E-04
23	GO:0030544: Hsp70 protein binding	2.46E-04
24	GO:0015230: FAD transmembrane transporter activity	2.46E-04
25	GO:0019786: Atg8-specific protease activity	2.46E-04
26	GO:0016229: steroid dehydrogenase activity	2.46E-04
27	GO:0004347: glucose-6-phosphate isomerase activity	2.46E-04
28	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.17E-04
29	GO:0004534: 5'-3' exoribonuclease activity	5.44E-04
30	GO:0003919: FMN adenylyltransferase activity	5.44E-04
31	GO:0019779: Atg8 activating enzyme activity	5.44E-04
32	GO:0042937: tripeptide transporter activity	5.44E-04
33	GO:0005366: myo-inositol:proton symporter activity	5.44E-04
34	GO:0008517: folic acid transporter activity	5.44E-04
35	GO:0015228: coenzyme A transmembrane transporter activity	5.44E-04
36	GO:0019781: NEDD8 activating enzyme activity	5.44E-04
37	GO:0004617: phosphoglycerate dehydrogenase activity	5.44E-04
38	GO:0051724: NAD transporter activity	5.44E-04
39	GO:0017025: TBP-class protein binding	8.79E-04
40	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	8.83E-04
41	GO:0010277: chlorophyllide a oxygenase [overall] activity	8.83E-04
42	GO:0003999: adenine phosphoribosyltransferase activity	1.26E-03
43	GO:0004108: citrate (Si)-synthase activity	1.26E-03
44	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.26E-03
45	GO:0017089: glycolipid transporter activity	1.26E-03
46	GO:0015186: L-glutamine transmembrane transporter activity	1.26E-03
47	GO:0019201: nucleotide kinase activity	1.26E-03
48	GO:0070628: proteasome binding	1.68E-03
49	GO:0004576: oligosaccharyl transferase activity	1.68E-03
50	GO:0019776: Atg8 ligase activity	1.68E-03
51	GO:0004659: prenyltransferase activity	1.68E-03
52	GO:0015368: calcium:cation antiporter activity	1.68E-03
53	GO:0010011: auxin binding	1.68E-03
54	GO:0008409: 5'-3' exonuclease activity	1.68E-03
55	GO:0042936: dipeptide transporter activity	1.68E-03
56	GO:0051861: glycolipid binding	1.68E-03
57	GO:0015369: calcium:proton antiporter activity	1.68E-03
58	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.68E-03
59	GO:0047134: protein-disulfide reductase activity	1.82E-03
60	GO:0008641: small protein activating enzyme activity	2.15E-03
61	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	2.15E-03
62	GO:0080122: AMP transmembrane transporter activity	2.15E-03
63	GO:0004040: amidase activity	2.15E-03
64	GO:0031386: protein tag	2.15E-03
65	GO:0004791: thioredoxin-disulfide reductase activity	2.27E-03
66	GO:0051117: ATPase binding	2.65E-03
67	GO:0004197: cysteine-type endopeptidase activity	2.78E-03
68	GO:0004017: adenylate kinase activity	3.18E-03
69	GO:0102391: decanoate--CoA ligase activity	3.18E-03
70	GO:0005347: ATP transmembrane transporter activity	3.18E-03
71	GO:0015217: ADP transmembrane transporter activity	3.18E-03
72	GO:0003872: 6-phosphofructokinase activity	3.75E-03
73	GO:0004467: long-chain fatty acid-CoA ligase activity	3.75E-03
74	GO:0052747: sinapyl alcohol dehydrogenase activity	4.35E-03
75	GO:0004033: aldo-keto reductase (NADP) activity	4.35E-03
76	GO:0015491: cation:cation antiporter activity	4.35E-03
77	GO:0000989: transcription factor activity, transcription factor binding	5.65E-03
78	GO:0016207: 4-coumarate-CoA ligase activity	5.65E-03
79	GO:0016844: strictosidine synthase activity	6.33E-03
80	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	6.94E-03
81	GO:0046961: proton-transporting ATPase activity, rotational mechanism	7.80E-03
82	GO:0015386: potassium:proton antiporter activity	7.80E-03
83	GO:0008327: methyl-CpG binding	7.80E-03
84	GO:0008559: xenobiotic-transporting ATPase activity	7.80E-03
85	GO:0045551: cinnamyl-alcohol dehydrogenase activity	8.58E-03
86	GO:0016788: hydrolase activity, acting on ester bonds	9.14E-03
87	GO:0031072: heat shock protein binding	9.38E-03
88	GO:0051287: NAD binding	9.71E-03
89	GO:0008061: chitin binding	1.11E-02
90	GO:0003712: transcription cofactor activity	1.11E-02
91	GO:0004190: aspartic-type endopeptidase activity	1.11E-02
92	GO:0008234: cysteine-type peptidase activity	1.20E-02
93	GO:0015171: amino acid transmembrane transporter activity	1.20E-02
94	GO:0051536: iron-sulfur cluster binding	1.29E-02
95	GO:0005528: FK506 binding	1.29E-02
96	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.32E-02
97	GO:0022857: transmembrane transporter activity	1.45E-02
98	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.47E-02
99	GO:0004540: ribonuclease activity	1.47E-02
100	GO:0015035: protein disulfide oxidoreductase activity	1.59E-02
101	GO:0004402: histone acetyltransferase activity	1.99E-02
102	GO:0001085: RNA polymerase II transcription factor binding	2.09E-02
103	GO:0005355: glucose transmembrane transporter activity	2.21E-02
104	GO:0004872: receptor activity	2.32E-02
105	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.43E-02
106	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.43E-02
107	GO:0015385: sodium:proton antiporter activity	2.67E-02
108	GO:0003684: damaged DNA binding	2.79E-02
109	GO:0008237: metallopeptidase activity	2.91E-02
110	GO:0016597: amino acid binding	3.04E-02
111	GO:0051213: dioxygenase activity	3.16E-02
112	GO:0015250: water channel activity	3.16E-02
113	GO:0016887: ATPase activity	3.33E-02
114	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.42E-02
115	GO:0004683: calmodulin-dependent protein kinase activity	3.55E-02
116	GO:0046982: protein heterodimerization activity	4.05E-02
117	GO:0000287: magnesium ion binding	4.05E-02
118	GO:0004222: metalloendopeptidase activity	4.10E-02
119	GO:0004601: peroxidase activity	4.13E-02
120	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.24E-02
121	GO:0003746: translation elongation factor activity	4.52E-02
122	GO:0003697: single-stranded DNA binding	4.52E-02
123	GO:0051539: 4 iron, 4 sulfur cluster binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	7.06E-31
2	GO:0005839: proteasome core complex	2.45E-27
3	GO:0019773: proteasome core complex, alpha-subunit complex	2.41E-12
4	GO:0005773: vacuole	3.02E-09
5	GO:0005829: cytosol	3.99E-09
6	GO:0005774: vacuolar membrane	6.26E-09
7	GO:0000325: plant-type vacuole	4.05E-06
8	GO:0046861: glyoxysomal membrane	1.02E-05
9	GO:0005737: cytoplasm	2.92E-05
10	GO:0031597: cytosolic proteasome complex	1.34E-04
11	GO:0031595: nuclear proteasome complex	1.77E-04
12	GO:0005777: peroxisome	2.29E-04
13	GO:0019774: proteasome core complex, beta-subunit complex	2.46E-04
14	GO:0009514: glyoxysome	2.78E-04
15	GO:0010494: cytoplasmic stress granule	3.36E-04
16	GO:0008540: proteasome regulatory particle, base subcomplex	3.99E-04
17	GO:0001673: male germ cell nucleus	5.44E-04
18	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	5.44E-04
19	GO:0005764: lysosome	7.88E-04
20	GO:0005759: mitochondrial matrix	8.18E-04
21	GO:0009705: plant-type vacuole membrane	9.41E-04
22	GO:0045271: respiratory chain complex I	1.19E-03
23	GO:0005775: vacuolar lumen	1.26E-03
24	GO:0005844: polysome	1.68E-03
25	GO:0005776: autophagosome	1.68E-03
26	GO:0005747: mitochondrial respiratory chain complex I	2.10E-03
27	GO:0005945: 6-phosphofructokinase complex	2.15E-03
28	GO:0008250: oligosaccharyltransferase complex	2.15E-03
29	GO:0055035: plastid thylakoid membrane	2.15E-03
30	GO:0022626: cytosolic ribosome	2.64E-03
31	GO:0005771: multivesicular body	2.65E-03
32	GO:0030904: retromer complex	2.65E-03
33	GO:0000932: P-body	3.76E-03
34	GO:0005788: endoplasmic reticulum lumen	3.98E-03
35	GO:0005783: endoplasmic reticulum	4.04E-03
36	GO:0000421: autophagosome membrane	4.35E-03
37	GO:0005779: integral component of peroxisomal membrane	4.98E-03
38	GO:0048046: apoplast	5.18E-03
39	GO:0008180: COP9 signalosome	5.65E-03
40	GO:0008541: proteasome regulatory particle, lid subcomplex	7.80E-03
41	GO:0005886: plasma membrane	9.54E-03
42	GO:0031966: mitochondrial membrane	1.01E-02
43	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.11E-02
44	GO:0005794: Golgi apparatus	1.12E-02
45	GO:0031410: cytoplasmic vesicle	1.57E-02
46	GO:0032580: Golgi cisterna membrane	2.79E-02
47	GO:0005778: peroxisomal membrane	2.91E-02
48	GO:0005615: extracellular space	2.99E-02
49	GO:0005667: transcription factor complex	3.42E-02
50	GO:0019005: SCF ubiquitin ligase complex	3.82E-02
51	GO:0009507: chloroplast	4.00E-02
52	GO:0005618: cell wall	4.08E-02
53	GO:0016020: membrane	4.28E-02
54	GO:0005819: spindle	4.81E-02