co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G64290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080005: photosystem stoichiometry adjustment	5.03E-08
2	GO:0015995: chlorophyll biosynthetic process	6.10E-06
3	GO:0000105: histidine biosynthetic process	6.88E-06
4	GO:0071461: cellular response to redox state	2.64E-05
5	GO:0010343: singlet oxygen-mediated programmed cell death	6.72E-05
6	GO:2000030: regulation of response to red or far red light	6.72E-05
7	GO:0050688: regulation of defense response to virus	6.72E-05
8	GO:0016117: carotenoid biosynthetic process	9.19E-05
9	GO:0071836: nectar secretion	1.18E-04
10	GO:0006696: ergosterol biosynthetic process	1.18E-04
11	GO:0006013: mannose metabolic process	1.18E-04
12	GO:2001141: regulation of RNA biosynthetic process	1.76E-04
13	GO:0046653: tetrahydrofolate metabolic process	1.76E-04
14	GO:0033014: tetrapyrrole biosynthetic process	1.76E-04
15	GO:0051289: protein homotetramerization	1.76E-04
16	GO:0009658: chloroplast organization	1.99E-04
17	GO:0009616: virus induced gene silencing	3.07E-04
18	GO:0016120: carotene biosynthetic process	3.07E-04
19	GO:0000304: response to singlet oxygen	3.07E-04
20	GO:0006508: proteolysis	3.38E-04
21	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.78E-04
22	GO:0010019: chloroplast-nucleus signaling pathway	4.53E-04
23	GO:0010050: vegetative phase change	5.30E-04
24	GO:0009396: folic acid-containing compound biosynthetic process	5.30E-04
25	GO:0044030: regulation of DNA methylation	6.94E-04
26	GO:0071482: cellular response to light stimulus	6.94E-04
27	GO:0035999: tetrahydrofolate interconversion	8.68E-04
28	GO:0010267: production of ta-siRNAs involved in RNA interference	8.68E-04
29	GO:0045036: protein targeting to chloroplast	9.59E-04
30	GO:0051555: flavonol biosynthetic process	9.59E-04
31	GO:0006782: protoporphyrinogen IX biosynthetic process	9.59E-04
32	GO:0016485: protein processing	1.05E-03
33	GO:0043085: positive regulation of catalytic activity	1.05E-03
34	GO:0006879: cellular iron ion homeostasis	1.05E-03
35	GO:0006352: DNA-templated transcription, initiation	1.05E-03
36	GO:0005986: sucrose biosynthetic process	1.25E-03
37	GO:0006541: glutamine metabolic process	1.35E-03
38	GO:0019253: reductive pentose-phosphate cycle	1.35E-03
39	GO:0010207: photosystem II assembly	1.35E-03
40	GO:0010025: wax biosynthetic process	1.56E-03
41	GO:0006730: one-carbon metabolic process	2.02E-03
42	GO:0016226: iron-sulfur cluster assembly	2.02E-03
43	GO:0009411: response to UV	2.14E-03
44	GO:0009791: post-embryonic development	2.91E-03
45	GO:0051607: defense response to virus	3.76E-03
46	GO:0009408: response to heat	3.81E-03
47	GO:0009816: defense response to bacterium, incompatible interaction	4.06E-03
48	GO:0010043: response to zinc ion	5.18E-03
49	GO:0007568: aging	5.18E-03
50	GO:0009853: photorespiration	5.52E-03
51	GO:0055114: oxidation-reduction process	5.94E-03
52	GO:0009735: response to cytokinin	6.16E-03
53	GO:0051603: proteolysis involved in cellular protein catabolic process	8.28E-03
54	GO:0006096: glycolytic process	9.08E-03
55	GO:0010228: vegetative to reproductive phase transition of meristem	1.57E-02
56	GO:0010468: regulation of gene expression	1.73E-02
57	GO:0046686: response to cadmium ion	2.14E-02
58	GO:0080167: response to karrikin	2.42E-02
59	GO:0046777: protein autophosphorylation	2.54E-02
60	GO:0015979: photosynthesis	2.66E-02
61	GO:0006281: DNA repair	3.19E-02
62	GO:0009555: pollen development	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0016833: oxo-acid-lyase activity	0.00E+00
2	GO:0070009: serine-type aminopeptidase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0000107: imidazoleglycerol-phosphate synthase activity	0.00E+00
5	GO:0045436: lycopene beta cyclase activity	0.00E+00
6	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0004399: histidinol dehydrogenase activity	0.00E+00
9	GO:0030941: chloroplast targeting sequence binding	2.64E-05
10	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.64E-05
11	GO:0046906: tetrapyrrole binding	2.64E-05
12	GO:0051996: squalene synthase activity	2.64E-05
13	GO:0016783: sulfurtransferase activity	2.64E-05
14	GO:0004176: ATP-dependent peptidase activity	6.21E-05
15	GO:0004618: phosphoglycerate kinase activity	6.72E-05
16	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	6.72E-05
17	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	6.72E-05
18	GO:0004109: coproporphyrinogen oxidase activity	6.72E-05
19	GO:0004046: aminoacylase activity	6.72E-05
20	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.72E-05
21	GO:0016887: ATPase activity	7.77E-05
22	GO:0004180: carboxypeptidase activity	1.18E-04
23	GO:0046524: sucrose-phosphate synthase activity	1.18E-04
24	GO:0003913: DNA photolyase activity	1.18E-04
25	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.18E-04
26	GO:0016851: magnesium chelatase activity	1.76E-04
27	GO:0004792: thiosulfate sulfurtransferase activity	1.76E-04
28	GO:0008237: metallopeptidase activity	1.81E-04
29	GO:0001053: plastid sigma factor activity	2.39E-04
30	GO:0051861: glycolipid binding	2.39E-04
31	GO:0016987: sigma factor activity	2.39E-04
32	GO:0004222: metalloendopeptidase activity	2.97E-04
33	GO:0004559: alpha-mannosidase activity	4.53E-04
34	GO:0016157: sucrose synthase activity	4.53E-04
35	GO:0019899: enzyme binding	5.30E-04
36	GO:0031072: heat shock protein binding	1.25E-03
37	GO:0008080: N-acetyltransferase activity	2.65E-03
38	GO:0048038: quinone binding	3.05E-03
39	GO:0008236: serine-type peptidase activity	4.53E-03
40	GO:0004185: serine-type carboxypeptidase activity	6.57E-03
41	GO:0051287: NAD binding	7.50E-03
42	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	8.08E-03
43	GO:0080043: quercetin 3-O-glucosyltransferase activity	9.71E-03
44	GO:0080044: quercetin 7-O-glucosyltransferase activity	9.71E-03
45	GO:0051082: unfolded protein binding	1.03E-02
46	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.23E-02
47	GO:0005524: ATP binding	1.55E-02
48	GO:0008194: UDP-glycosyltransferase activity	1.65E-02
49	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.80E-02
50	GO:0016757: transferase activity, transferring glycosyl groups	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.88E-18
2	GO:0009570: chloroplast stroma	4.63E-06
3	GO:0009536: plastid	5.24E-05
4	GO:0010007: magnesium chelatase complex	1.18E-04
5	GO:0005655: nucleolar ribonuclease P complex	4.53E-04
6	GO:0031359: integral component of chloroplast outer membrane	5.30E-04
7	GO:0009706: chloroplast inner membrane	8.20E-04
8	GO:0048471: perinuclear region of cytoplasm	1.05E-03
9	GO:0009535: chloroplast thylakoid membrane	1.11E-03
10	GO:0042651: thylakoid membrane	1.78E-03
11	GO:0009532: plastid stroma	1.90E-03
12	GO:0031969: chloroplast membrane	2.60E-03
13	GO:0009941: chloroplast envelope	3.41E-03
14	GO:0005773: vacuole	4.10E-03
15	GO:0009707: chloroplast outer membrane	4.69E-03
16	GO:0010287: plastoglobule	1.17E-02
17	GO:0009505: plant-type cell wall	1.72E-02
18	GO:0005743: mitochondrial inner membrane	3.03E-02
19	GO:0043231: intracellular membrane-bounded organelle	3.42E-02