co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63700

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905157: positive regulation of photosynthesis	0.00E+00
2	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0015882: L-ascorbic acid transport	0.00E+00
5	GO:0015995: chlorophyll biosynthetic process	8.06E-06
6	GO:0031426: polycistronic mRNA processing	3.00E-05
7	GO:0010028: xanthophyll cycle	3.00E-05
8	GO:0071277: cellular response to calcium ion	3.00E-05
9	GO:0009791: post-embryonic development	1.52E-04
10	GO:0010239: chloroplast mRNA processing	1.97E-04
11	GO:0009902: chloroplast relocation	2.67E-04
12	GO:0043097: pyrimidine nucleoside salvage	3.42E-04
13	GO:0015979: photosynthesis	3.91E-04
14	GO:0009643: photosynthetic acclimation	4.20E-04
15	GO:0006206: pyrimidine nucleobase metabolic process	4.20E-04
16	GO:0071470: cellular response to osmotic stress	5.02E-04
17	GO:0009704: de-etiolation	6.76E-04
18	GO:0009585: red, far-red light phototransduction	6.82E-04
19	GO:0009657: plastid organization	7.68E-04
20	GO:0090333: regulation of stomatal closure	8.63E-04
21	GO:0098656: anion transmembrane transport	8.63E-04
22	GO:0048507: meristem development	8.63E-04
23	GO:0009638: phototropism	9.61E-04
24	GO:0009098: leucine biosynthetic process	9.61E-04
25	GO:0009641: shade avoidance	1.06E-03
26	GO:0006949: syncytium formation	1.06E-03
27	GO:0018119: peptidyl-cysteine S-nitrosylation	1.16E-03
28	GO:0009725: response to hormone	1.38E-03
29	GO:0010223: secondary shoot formation	1.50E-03
30	GO:0019253: reductive pentose-phosphate cycle	1.50E-03
31	GO:0006833: water transport	1.73E-03
32	GO:0080092: regulation of pollen tube growth	2.25E-03
33	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.38E-03
34	GO:0009658: chloroplast organization	2.46E-03
35	GO:0055114: oxidation-reduction process	2.58E-03
36	GO:0034220: ion transmembrane transport	2.80E-03
37	GO:0006606: protein import into nucleus	2.80E-03
38	GO:0019761: glucosinolate biosynthetic process	3.55E-03
39	GO:0009828: plant-type cell wall loosening	3.87E-03
40	GO:0006810: transport	4.32E-03
41	GO:0018298: protein-chromophore linkage	5.23E-03
42	GO:0006811: ion transport	5.60E-03
43	GO:0034599: cellular response to oxidative stress	6.35E-03
44	GO:0009735: response to cytokinin	7.23E-03
45	GO:0010114: response to red light	7.34E-03
46	GO:0009744: response to sucrose	7.34E-03
47	GO:0009644: response to high light intensity	7.75E-03
48	GO:0009416: response to light stimulus	7.91E-03
49	GO:0009664: plant-type cell wall organization	8.60E-03
50	GO:0006364: rRNA processing	9.03E-03
51	GO:0006813: potassium ion transport	9.03E-03
52	GO:0006417: regulation of translation	9.70E-03
53	GO:0055085: transmembrane transport	1.00E-02
54	GO:0009624: response to nematode	1.16E-02
55	GO:0006396: RNA processing	1.18E-02
56	GO:0009058: biosynthetic process	1.41E-02
57	GO:0009845: seed germination	1.43E-02
58	GO:0007623: circadian rhythm	1.70E-02
59	GO:0010468: regulation of gene expression	1.93E-02
60	GO:0009409: response to cold	2.18E-02
61	GO:0009826: unidimensional cell growth	2.26E-02
62	GO:0042254: ribosome biogenesis	2.36E-02
63	GO:0009860: pollen tube growth	2.45E-02
64	GO:0048366: leaf development	2.61E-02
65	GO:0045454: cell redox homeostasis	3.08E-02
66	GO:0006629: lipid metabolic process	3.58E-02
67	GO:0006397: mRNA processing	3.69E-02
68	GO:0009793: embryo development ending in seed dormancy	3.72E-02
69	GO:0008152: metabolic process	3.83E-02

Rank	GO Term	Adjusted P value
1	GO:0008974: phosphoribulokinase activity	0.00E+00
2	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
3	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
4	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
5	GO:0035671: enone reductase activity	3.00E-05
6	GO:0004451: isocitrate lyase activity	3.00E-05
7	GO:0003862: 3-isopropylmalate dehydrogenase activity	7.58E-05
8	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.32E-04
9	GO:0004148: dihydrolipoyl dehydrogenase activity	1.32E-04
10	GO:0022890: inorganic cation transmembrane transporter activity	1.97E-04
11	GO:0048027: mRNA 5'-UTR binding	1.97E-04
12	GO:0016851: magnesium chelatase activity	1.97E-04
13	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.67E-04
14	GO:0000293: ferric-chelate reductase activity	4.20E-04
15	GO:0004849: uridine kinase activity	5.02E-04
16	GO:0008135: translation factor activity, RNA binding	7.68E-04
17	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.16E-03
18	GO:0015386: potassium:proton antiporter activity	1.16E-03
19	GO:0008081: phosphoric diester hydrolase activity	1.38E-03
20	GO:0005315: inorganic phosphate transmembrane transporter activity	1.38E-03
21	GO:0015079: potassium ion transmembrane transporter activity	1.98E-03
22	GO:0022891: substrate-specific transmembrane transporter activity	2.38E-03
23	GO:0003727: single-stranded RNA binding	2.52E-03
24	GO:0008514: organic anion transmembrane transporter activity	2.52E-03
25	GO:0016853: isomerase activity	3.09E-03
26	GO:0015299: solute:proton antiporter activity	3.09E-03
27	GO:0004872: receptor activity	3.24E-03
28	GO:0015250: water channel activity	4.36E-03
29	GO:0016168: chlorophyll binding	4.53E-03
30	GO:0050897: cobalt ion binding	5.78E-03
31	GO:0003746: translation elongation factor activity	6.16E-03
32	GO:0016887: ATPase activity	6.91E-03
33	GO:0051537: 2 iron, 2 sulfur cluster binding	7.75E-03
34	GO:0043621: protein self-association	7.75E-03
35	GO:0051287: NAD binding	8.38E-03
36	GO:0005507: copper ion binding	1.13E-02
37	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.38E-02
38	GO:0008565: protein transporter activity	1.54E-02
39	GO:0000287: magnesium ion binding	2.29E-02
40	GO:0050660: flavin adenine dinucleotide binding	2.58E-02
41	GO:0003924: GTPase activity	3.58E-02
42	GO:0009055: electron carrier activity	3.76E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.31E-11
2	GO:0009535: chloroplast thylakoid membrane	3.46E-10
3	GO:0009941: chloroplast envelope	2.59E-06
4	GO:0009579: thylakoid	1.42E-05
5	GO:0009706: chloroplast inner membrane	6.05E-05
6	GO:0009570: chloroplast stroma	6.92E-05
7	GO:0010007: magnesium chelatase complex	1.32E-04
8	GO:0010319: stromule	2.14E-04
9	GO:0042644: chloroplast nucleoid	8.63E-04
10	GO:0016324: apical plasma membrane	1.06E-03
11	GO:0009534: chloroplast thylakoid	1.39E-03
12	GO:0042651: thylakoid membrane	1.98E-03
13	GO:0048046: apoplast	2.96E-03
14	GO:0031969: chloroplast membrane	3.04E-03
15	GO:0009523: photosystem II	3.24E-03
16	GO:0009707: chloroplast outer membrane	5.23E-03
17	GO:0031977: thylakoid lumen	6.94E-03
18	GO:0005747: mitochondrial respiratory chain complex I	1.04E-02
19	GO:0010287: plastoglobule	1.31E-02
20	GO:0009543: chloroplast thylakoid lumen	1.36E-02
21	GO:0005623: cell	1.38E-02
22	GO:0005759: mitochondrial matrix	1.59E-02
23	GO:0009536: plastid	1.97E-02
24	GO:0005887: integral component of plasma membrane	4.44E-02