co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63530

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0036172: thiamine salvage	0.00E+00
4	GO:0071000: response to magnetism	0.00E+00
5	GO:0032928: regulation of superoxide anion generation	0.00E+00
6	GO:0009661: chromoplast organization	0.00E+00
7	GO:0010343: singlet oxygen-mediated programmed cell death	2.28E-06
8	GO:0016120: carotene biosynthetic process	5.56E-05
9	GO:0010117: photoprotection	5.56E-05
10	GO:0046283: anthocyanin-containing compound metabolic process	5.56E-05
11	GO:0034971: histone H3-R17 methylation	2.20E-04
12	GO:0072387: flavin adenine dinucleotide metabolic process	2.20E-04
13	GO:0071461: cellular response to redox state	2.20E-04
14	GO:0048438: floral whorl development	2.20E-04
15	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.20E-04
16	GO:0034970: histone H3-R2 methylation	2.20E-04
17	GO:0034972: histone H3-R26 methylation	2.20E-04
18	GO:1902265: abscisic acid homeostasis	2.20E-04
19	GO:0022900: electron transport chain	2.36E-04
20	GO:1900426: positive regulation of defense response to bacterium	3.41E-04
21	GO:1904143: positive regulation of carotenoid biosynthetic process	4.90E-04
22	GO:0016122: xanthophyll metabolic process	4.90E-04
23	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	4.90E-04
24	GO:0080185: effector dependent induction by symbiont of host immune response	4.90E-04
25	GO:1901529: positive regulation of anion channel activity	4.90E-04
26	GO:0080005: photosystem stoichiometry adjustment	4.90E-04
27	GO:0010617: circadian regulation of calcium ion oscillation	4.90E-04
28	GO:0007154: cell communication	4.90E-04
29	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.90E-04
30	GO:0099402: plant organ development	4.90E-04
31	GO:0010220: positive regulation of vernalization response	4.90E-04
32	GO:0009767: photosynthetic electron transport chain	6.01E-04
33	GO:0044375: regulation of peroxisome size	7.98E-04
34	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	7.98E-04
35	GO:0031022: nuclear migration along microfilament	7.98E-04
36	GO:1902448: positive regulation of shade avoidance	7.98E-04
37	GO:1901672: positive regulation of systemic acquired resistance	7.98E-04
38	GO:0009150: purine ribonucleotide metabolic process	7.98E-04
39	GO:0071492: cellular response to UV-A	7.98E-04
40	GO:0006696: ergosterol biosynthetic process	7.98E-04
41	GO:0009640: photomorphogenesis	9.24E-04
42	GO:0006882: cellular zinc ion homeostasis	1.14E-03
43	GO:2001141: regulation of RNA biosynthetic process	1.14E-03
44	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.14E-03
45	GO:0010371: regulation of gibberellin biosynthetic process	1.14E-03
46	GO:0009963: positive regulation of flavonoid biosynthetic process	1.14E-03
47	GO:0009647: skotomorphogenesis	1.14E-03
48	GO:0033014: tetrapyrrole biosynthetic process	1.14E-03
49	GO:1901332: negative regulation of lateral root development	1.14E-03
50	GO:0009658: chloroplast organization	1.43E-03
51	GO:0070534: protein K63-linked ubiquitination	1.51E-03
52	GO:0071486: cellular response to high light intensity	1.51E-03
53	GO:0009765: photosynthesis, light harvesting	1.51E-03
54	GO:0009649: entrainment of circadian clock	1.51E-03
55	GO:1902347: response to strigolactone	1.51E-03
56	GO:0009902: chloroplast relocation	1.51E-03
57	GO:0034613: cellular protein localization	1.51E-03
58	GO:0016117: carotenoid biosynthetic process	1.56E-03
59	GO:0009229: thiamine diphosphate biosynthetic process	1.93E-03
60	GO:0000304: response to singlet oxygen	1.93E-03
61	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.23E-03
62	GO:0006301: postreplication repair	2.38E-03
63	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.38E-03
64	GO:0016070: RNA metabolic process	2.38E-03
65	GO:0006555: methionine metabolic process	2.38E-03
66	GO:0031053: primary miRNA processing	2.38E-03
67	GO:1901371: regulation of leaf morphogenesis	2.38E-03
68	GO:0009228: thiamine biosynthetic process	2.38E-03
69	GO:0060918: auxin transport	2.38E-03
70	GO:0000060: protein import into nucleus, translocation	2.38E-03
71	GO:0010190: cytochrome b6f complex assembly	2.38E-03
72	GO:0033365: protein localization to organelle	2.38E-03
73	GO:0010019: chloroplast-nucleus signaling pathway	2.86E-03
74	GO:0010310: regulation of hydrogen peroxide metabolic process	2.86E-03
75	GO:0010077: maintenance of inflorescence meristem identity	2.86E-03
76	GO:0019509: L-methionine salvage from methylthioadenosine	2.86E-03
77	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.86E-03
78	GO:0010076: maintenance of floral meristem identity	2.86E-03
79	GO:0009903: chloroplast avoidance movement	2.86E-03
80	GO:0016126: sterol biosynthetic process	3.21E-03
81	GO:0010038: response to metal ion	3.36E-03
82	GO:1900056: negative regulation of leaf senescence	3.36E-03
83	GO:0030026: cellular manganese ion homeostasis	3.36E-03
84	GO:0051510: regulation of unidimensional cell growth	3.36E-03
85	GO:0050821: protein stabilization	3.90E-03
86	GO:0009231: riboflavin biosynthetic process	3.90E-03
87	GO:0006102: isocitrate metabolic process	3.90E-03
88	GO:0016559: peroxisome fission	3.90E-03
89	GO:0048564: photosystem I assembly	3.90E-03
90	GO:0045292: mRNA cis splicing, via spliceosome	3.90E-03
91	GO:0010928: regulation of auxin mediated signaling pathway	3.90E-03
92	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.90E-03
93	GO:0009704: de-etiolation	3.90E-03
94	GO:0071482: cellular response to light stimulus	4.47E-03
95	GO:0032544: plastid translation	4.47E-03
96	GO:0015780: nucleotide-sugar transport	5.06E-03
97	GO:0009821: alkaloid biosynthetic process	5.06E-03
98	GO:0006783: heme biosynthetic process	5.06E-03
99	GO:0009637: response to blue light	5.30E-03
100	GO:0009638: phototropism	5.68E-03
101	GO:0006779: porphyrin-containing compound biosynthetic process	5.68E-03
102	GO:0010380: regulation of chlorophyll biosynthetic process	5.68E-03
103	GO:0009688: abscisic acid biosynthetic process	6.32E-03
104	GO:0009641: shade avoidance	6.32E-03
105	GO:0051555: flavonol biosynthetic process	6.32E-03
106	GO:0055062: phosphate ion homeostasis	6.32E-03
107	GO:0006816: calcium ion transport	6.98E-03
108	GO:0008285: negative regulation of cell proliferation	6.98E-03
109	GO:0043085: positive regulation of catalytic activity	6.98E-03
110	GO:0006352: DNA-templated transcription, initiation	6.98E-03
111	GO:0006790: sulfur compound metabolic process	7.68E-03
112	GO:0010582: floral meristem determinacy	7.68E-03
113	GO:0009718: anthocyanin-containing compound biosynthetic process	8.39E-03
114	GO:0010075: regulation of meristem growth	8.39E-03
115	GO:0009785: blue light signaling pathway	8.39E-03
116	GO:0030048: actin filament-based movement	8.39E-03
117	GO:0009225: nucleotide-sugar metabolic process	9.90E-03
118	GO:0007031: peroxisome organization	9.90E-03
119	GO:0019853: L-ascorbic acid biosynthetic process	9.90E-03
120	GO:2000377: regulation of reactive oxygen species metabolic process	1.15E-02
121	GO:0010073: meristem maintenance	1.23E-02
122	GO:0007017: microtubule-based process	1.23E-02
123	GO:0016226: iron-sulfur cluster assembly	1.40E-02
124	GO:0006810: transport	1.44E-02
125	GO:0010227: floral organ abscission	1.49E-02
126	GO:0006012: galactose metabolic process	1.49E-02
127	GO:0009693: ethylene biosynthetic process	1.49E-02
128	GO:0055114: oxidation-reduction process	1.66E-02
129	GO:0009058: biosynthetic process	1.74E-02
130	GO:0010118: stomatal movement	1.77E-02
131	GO:0009958: positive gravitropism	1.87E-02
132	GO:0006520: cellular amino acid metabolic process	1.87E-02
133	GO:0006662: glycerol ether metabolic process	1.87E-02
134	GO:0006508: proteolysis	1.89E-02
135	GO:0042752: regulation of circadian rhythm	1.97E-02
136	GO:0009646: response to absence of light	1.97E-02
137	GO:0007264: small GTPase mediated signal transduction	2.28E-02
138	GO:0007623: circadian rhythm	2.28E-02
139	GO:0030163: protein catabolic process	2.38E-02
140	GO:0010228: vegetative to reproductive phase transition of meristem	2.39E-02
141	GO:0010029: regulation of seed germination	2.94E-02
142	GO:0015995: chlorophyll biosynthetic process	3.17E-02
143	GO:0010411: xyloglucan metabolic process	3.17E-02
144	GO:0048573: photoperiodism, flowering	3.17E-02
145	GO:0006950: response to stress	3.17E-02
146	GO:0030244: cellulose biosynthetic process	3.41E-02
147	GO:0018298: protein-chromophore linkage	3.41E-02
148	GO:0006811: ion transport	3.66E-02
149	GO:0010218: response to far red light	3.66E-02
150	GO:0010043: response to zinc ion	3.78E-02
151	GO:0007568: aging	3.78E-02
152	GO:0009910: negative regulation of flower development	3.78E-02
153	GO:0009631: cold acclimation	3.78E-02
154	GO:0010119: regulation of stomatal movement	3.78E-02
155	GO:0045893: positive regulation of transcription, DNA-templated	3.83E-02
156	GO:0006099: tricarboxylic acid cycle	4.16E-02
157	GO:0034599: cellular response to oxidative stress	4.16E-02
158	GO:0080167: response to karrikin	4.36E-02
159	GO:0006839: mitochondrial transport	4.43E-02
160	GO:0046777: protein autophosphorylation	4.66E-02
161	GO:0010114: response to red light	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0045436: lycopene beta cyclase activity	0.00E+00
4	GO:0047918: GDP-mannose 3,5-epimerase activity	0.00E+00
5	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
6	GO:0046905: phytoene synthase activity	0.00E+00
7	GO:0004848: ureidoglycolate hydrolase activity	8.31E-06
8	GO:0000254: C-4 methylsterol oxidase activity	1.90E-05
9	GO:0048038: quinone binding	2.14E-04
10	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2.20E-04
11	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.20E-04
12	GO:0046906: tetrapyrrole binding	2.20E-04
13	GO:0015085: calcium ion transmembrane transporter activity	2.20E-04
14	GO:0004325: ferrochelatase activity	2.20E-04
15	GO:0051996: squalene synthase activity	2.20E-04
16	GO:0016783: sulfurtransferase activity	2.20E-04
17	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	4.90E-04
18	GO:0043425: bHLH transcription factor binding	4.90E-04
19	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	4.90E-04
20	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.90E-04
21	GO:0004046: aminoacylase activity	4.90E-04
22	GO:0035241: protein-arginine omega-N monomethyltransferase activity	4.90E-04
23	GO:0004450: isocitrate dehydrogenase (NADP+) activity	4.90E-04
24	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.90E-04
25	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	4.90E-04
26	GO:0008469: histone-arginine N-methyltransferase activity	7.98E-04
27	GO:0004180: carboxypeptidase activity	7.98E-04
28	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	7.98E-04
29	GO:0032947: protein complex scaffold	7.98E-04
30	GO:0019003: GDP binding	7.98E-04
31	GO:0003935: GTP cyclohydrolase II activity	7.98E-04
32	GO:0004176: ATP-dependent peptidase activity	1.12E-03
33	GO:0000339: RNA cap binding	1.14E-03
34	GO:0009882: blue light photoreceptor activity	1.14E-03
35	GO:0047627: adenylylsulfatase activity	1.14E-03
36	GO:0016851: magnesium chelatase activity	1.14E-03
37	GO:0004792: thiosulfate sulfurtransferase activity	1.14E-03
38	GO:0015368: calcium:cation antiporter activity	1.51E-03
39	GO:0001053: plastid sigma factor activity	1.51E-03
40	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.51E-03
41	GO:0015369: calcium:proton antiporter activity	1.51E-03
42	GO:0016987: sigma factor activity	1.51E-03
43	GO:0000293: ferric-chelate reductase activity	2.38E-03
44	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.38E-03
45	GO:0008237: metallopeptidase activity	2.87E-03
46	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.36E-03
47	GO:0016621: cinnamoyl-CoA reductase activity	3.36E-03
48	GO:0019899: enzyme binding	3.36E-03
49	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	3.90E-03
50	GO:0004034: aldose 1-epimerase activity	3.90E-03
51	GO:0004222: metalloendopeptidase activity	4.61E-03
52	GO:0071949: FAD binding	5.06E-03
53	GO:0042802: identical protein binding	5.67E-03
54	GO:0016844: strictosidine synthase activity	5.68E-03
55	GO:0004713: protein tyrosine kinase activity	6.32E-03
56	GO:0004129: cytochrome-c oxidase activity	6.98E-03
57	GO:0051537: 2 iron, 2 sulfur cluster binding	7.39E-03
58	GO:0051287: NAD binding	8.28E-03
59	GO:0031072: heat shock protein binding	8.39E-03
60	GO:0015266: protein channel activity	8.39E-03
61	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.13E-03
62	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.13E-02
63	GO:0051536: iron-sulfur cluster binding	1.15E-02
64	GO:0016491: oxidoreductase activity	1.19E-02
65	GO:0022857: transmembrane transporter activity	1.24E-02
66	GO:0042803: protein homodimerization activity	1.28E-02
67	GO:0047134: protein-disulfide reductase activity	1.68E-02
68	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.69E-02
69	GO:0008080: N-acetyltransferase activity	1.87E-02
70	GO:0004791: thioredoxin-disulfide reductase activity	1.97E-02
71	GO:0016853: isomerase activity	1.97E-02
72	GO:0050662: coenzyme binding	1.97E-02
73	GO:0004518: nuclease activity	2.28E-02
74	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.38E-02
75	GO:0005506: iron ion binding	2.41E-02
76	GO:0008483: transaminase activity	2.60E-02
77	GO:0016413: O-acetyltransferase activity	2.71E-02
78	GO:0046872: metal ion binding	2.81E-02
79	GO:0003824: catalytic activity	2.83E-02
80	GO:0016168: chlorophyll binding	2.94E-02
81	GO:0030247: polysaccharide binding	3.17E-02
82	GO:0008236: serine-type peptidase activity	3.29E-02
83	GO:0008168: methyltransferase activity	3.39E-02
84	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.41E-02
85	GO:0046982: protein heterodimerization activity	3.46E-02
86	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.03E-02
87	GO:0061630: ubiquitin protein ligase activity	4.58E-02
88	GO:0004185: serine-type carboxypeptidase activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	5.86E-16
3	GO:0009535: chloroplast thylakoid membrane	6.62E-09
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.45E-06
5	GO:0031969: chloroplast membrane	5.92E-05
6	GO:0031972: chloroplast intermembrane space	2.20E-04
7	GO:0000152: nuclear ubiquitin ligase complex	2.20E-04
8	GO:0005845: mRNA cap binding complex	2.20E-04
9	GO:0016604: nuclear body	3.41E-04
10	GO:0005846: nuclear cap binding complex	4.90E-04
11	GO:0016605: PML body	7.98E-04
12	GO:0009527: plastid outer membrane	1.51E-03
13	GO:0030286: dynein complex	1.51E-03
14	GO:0031372: UBC13-MMS2 complex	1.51E-03
15	GO:0009517: PSII associated light-harvesting complex II	1.51E-03
16	GO:0055035: plastid thylakoid membrane	1.93E-03
17	GO:0005779: integral component of peroxisomal membrane	4.47E-03
18	GO:0009536: plastid	1.06E-02
19	GO:0005777: peroxisome	1.06E-02
20	GO:0005875: microtubule associated complex	1.07E-02
21	GO:0042651: thylakoid membrane	1.23E-02
22	GO:0015935: small ribosomal subunit	1.32E-02
23	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.58E-02
24	GO:0009523: photosystem II	2.07E-02
25	GO:0005778: peroxisomal membrane	2.60E-02
26	GO:0009534: chloroplast thylakoid	4.08E-02
27	GO:0005819: spindle	4.30E-02
28	GO:0031977: thylakoid lumen	4.56E-02