co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0036172: thiamine salvage	0.00E+00
2	GO:0048856: anatomical structure development	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0016576: histone dephosphorylation	0.00E+00
5	GO:0045740: positive regulation of DNA replication	0.00E+00
6	GO:0009583: detection of light stimulus	0.00E+00
7	GO:0010343: singlet oxygen-mediated programmed cell death	7.96E-07
8	GO:0072387: flavin adenine dinucleotide metabolic process	1.25E-04
9	GO:0048438: floral whorl development	1.25E-04
10	GO:2000071: regulation of defense response by callose deposition	2.90E-04
11	GO:0010617: circadian regulation of calcium ion oscillation	2.90E-04
12	GO:0099402: plant organ development	2.90E-04
13	GO:0035335: peptidyl-tyrosine dephosphorylation	2.90E-04
14	GO:1901529: positive regulation of anion channel activity	2.90E-04
15	GO:1901672: positive regulation of systemic acquired resistance	4.78E-04
16	GO:0043617: cellular response to sucrose starvation	4.78E-04
17	GO:0009150: purine ribonucleotide metabolic process	4.78E-04
18	GO:0045739: positive regulation of DNA repair	4.78E-04
19	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	4.78E-04
20	GO:1902448: positive regulation of shade avoidance	4.78E-04
21	GO:1901332: negative regulation of lateral root development	6.85E-04
22	GO:0010118: stomatal movement	7.93E-04
23	GO:0006552: leucine catabolic process	9.08E-04
24	GO:0051567: histone H3-K9 methylation	9.08E-04
25	GO:1902347: response to strigolactone	9.08E-04
26	GO:0042274: ribosomal small subunit biogenesis	9.08E-04
27	GO:0031935: regulation of chromatin silencing	9.08E-04
28	GO:0009646: response to absence of light	9.12E-04
29	GO:0000304: response to singlet oxygen	1.15E-03
30	GO:0010117: photoprotection	1.15E-03
31	GO:0046283: anthocyanin-containing compound metabolic process	1.15E-03
32	GO:0009229: thiamine diphosphate biosynthetic process	1.15E-03
33	GO:1901371: regulation of leaf morphogenesis	1.41E-03
34	GO:0009228: thiamine biosynthetic process	1.41E-03
35	GO:0060918: auxin transport	1.41E-03
36	GO:0010190: cytochrome b6f complex assembly	1.41E-03
37	GO:0016458: gene silencing	1.41E-03
38	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.41E-03
39	GO:0016070: RNA metabolic process	1.41E-03
40	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	1.41E-03
41	GO:0031053: primary miRNA processing	1.41E-03
42	GO:0045962: positive regulation of development, heterochronic	1.41E-03
43	GO:0010076: maintenance of floral meristem identity	1.68E-03
44	GO:0010016: shoot system morphogenesis	1.68E-03
45	GO:0010310: regulation of hydrogen peroxide metabolic process	1.68E-03
46	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.68E-03
47	GO:0080111: DNA demethylation	1.98E-03
48	GO:0000082: G1/S transition of mitotic cell cycle	1.98E-03
49	GO:0051510: regulation of unidimensional cell growth	1.98E-03
50	GO:0007050: cell cycle arrest	1.98E-03
51	GO:1900056: negative regulation of leaf senescence	1.98E-03
52	GO:0009910: negative regulation of flower development	2.22E-03
53	GO:0009704: de-etiolation	2.29E-03
54	GO:0048564: photosystem I assembly	2.29E-03
55	GO:0045292: mRNA cis splicing, via spliceosome	2.29E-03
56	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.29E-03
57	GO:0022900: electron transport chain	2.61E-03
58	GO:0009658: chloroplast organization	2.67E-03
59	GO:0015780: nucleotide-sugar transport	2.95E-03
60	GO:0098656: anion transmembrane transport	2.95E-03
61	GO:0048366: leaf development	3.29E-03
62	GO:0010380: regulation of chlorophyll biosynthetic process	3.31E-03
63	GO:0008356: asymmetric cell division	3.31E-03
64	GO:1900426: positive regulation of defense response to bacterium	3.31E-03
65	GO:0009638: phototropism	3.31E-03
66	GO:0009965: leaf morphogenesis	3.50E-03
67	GO:0006535: cysteine biosynthetic process from serine	3.68E-03
68	GO:0000103: sulfate assimilation	3.68E-03
69	GO:0009682: induced systemic resistance	4.06E-03
70	GO:0010582: floral meristem determinacy	4.45E-03
71	GO:0006790: sulfur compound metabolic process	4.45E-03
72	GO:0010102: lateral root morphogenesis	4.86E-03
73	GO:0009785: blue light signaling pathway	4.86E-03
74	GO:0010628: positive regulation of gene expression	4.86E-03
75	GO:0010075: regulation of meristem growth	4.86E-03
76	GO:0048367: shoot system development	5.11E-03
77	GO:0009266: response to temperature stimulus	5.28E-03
78	GO:0032259: methylation	5.45E-03
79	GO:0000162: tryptophan biosynthetic process	6.15E-03
80	GO:0006289: nucleotide-excision repair	6.61E-03
81	GO:2000377: regulation of reactive oxygen species metabolic process	6.61E-03
82	GO:0019344: cysteine biosynthetic process	6.61E-03
83	GO:0055114: oxidation-reduction process	6.83E-03
84	GO:0006306: DNA methylation	7.56E-03
85	GO:0016226: iron-sulfur cluster assembly	8.05E-03
86	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.05E-03
87	GO:0006284: base-excision repair	9.07E-03
88	GO:0010051: xylem and phloem pattern formation	1.01E-02
89	GO:0010087: phloem or xylem histogenesis	1.01E-02
90	GO:0042752: regulation of circadian rhythm	1.12E-02
91	GO:0006470: protein dephosphorylation	1.18E-02
92	GO:0009851: auxin biosynthetic process	1.18E-02
93	GO:0002229: defense response to oomycetes	1.24E-02
94	GO:0016579: protein deubiquitination	1.54E-02
95	GO:0006950: response to stress	1.81E-02
96	GO:0018298: protein-chromophore linkage	1.94E-02
97	GO:0010311: lateral root formation	2.01E-02
98	GO:0010218: response to far red light	2.08E-02
99	GO:0048527: lateral root development	2.15E-02
100	GO:0009867: jasmonic acid mediated signaling pathway	2.30E-02
101	GO:0009637: response to blue light	2.30E-02
102	GO:0006839: mitochondrial transport	2.52E-02
103	GO:0006897: endocytosis	2.60E-02
104	GO:0009640: photomorphogenesis	2.75E-02
105	GO:0010114: response to red light	2.75E-02
106	GO:0009744: response to sucrose	2.75E-02
107	GO:0009644: response to high light intensity	2.91E-02
108	GO:0008643: carbohydrate transport	2.91E-02
109	GO:0006260: DNA replication	3.15E-02
110	GO:0000165: MAPK cascade	3.15E-02
111	GO:0031347: regulation of defense response	3.15E-02
112	GO:0030154: cell differentiation	3.23E-02
113	GO:0009809: lignin biosynthetic process	3.40E-02
114	GO:0006417: regulation of translation	3.66E-02
115	GO:0009620: response to fungus	4.10E-02
116	GO:0000398: mRNA splicing, via spliceosome	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
2	GO:0003826: alpha-ketoacid dehydrogenase activity	0.00E+00
3	GO:0008170: N-methyltransferase activity	0.00E+00
4	GO:0004147: dihydrolipoamide branched chain acyltransferase activity	0.00E+00
5	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
6	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
7	GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity	0.00E+00
8	GO:0009008: DNA-methyltransferase activity	0.00E+00
9	GO:0004848: ureidoglycolate hydrolase activity	2.99E-06
10	GO:0016407: acetyltransferase activity	2.18E-05
11	GO:0004485: methylcrotonoyl-CoA carboxylase activity	1.25E-04
12	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.25E-04
13	GO:0071949: FAD binding	1.25E-04
14	GO:0016787: hydrolase activity	1.27E-04
15	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	2.90E-04
16	GO:0000900: translation repressor activity, nucleic acid binding	4.78E-04
17	GO:0004075: biotin carboxylase activity	4.78E-04
18	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	4.78E-04
19	GO:0032947: protein complex scaffold	4.78E-04
20	GO:0004176: ATP-dependent peptidase activity	5.28E-04
21	GO:0000339: RNA cap binding	6.85E-04
22	GO:0009882: blue light photoreceptor activity	6.85E-04
23	GO:0047627: adenylylsulfatase activity	6.85E-04
24	GO:0009001: serine O-acetyltransferase activity	6.85E-04
25	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	9.08E-04
26	GO:0004834: tryptophan synthase activity	9.08E-04
27	GO:0008237: metallopeptidase activity	1.32E-03
28	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	1.41E-03
29	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.68E-03
30	GO:0008143: poly(A) binding	1.98E-03
31	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.98E-03
32	GO:0016621: cinnamoyl-CoA reductase activity	1.98E-03
33	GO:0004222: metalloendopeptidase activity	2.12E-03
34	GO:0008168: methyltransferase activity	2.55E-03
35	GO:0016491: oxidoreductase activity	2.98E-03
36	GO:0004713: protein tyrosine kinase activity	3.68E-03
37	GO:0005315: inorganic phosphate transmembrane transporter activity	4.86E-03
38	GO:0031072: heat shock protein binding	4.86E-03
39	GO:0003887: DNA-directed DNA polymerase activity	6.15E-03
40	GO:0004386: helicase activity	6.50E-03
41	GO:0051536: iron-sulfur cluster binding	6.61E-03
42	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	7.66E-03
43	GO:0008514: organic anion transmembrane transporter activity	9.07E-03
44	GO:0008080: N-acetyltransferase activity	1.07E-02
45	GO:0050662: coenzyme binding	1.12E-02
46	GO:0048038: quinone binding	1.24E-02
47	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.24E-02
48	GO:0004518: nuclease activity	1.30E-02
49	GO:0004806: triglyceride lipase activity	1.81E-02
50	GO:0004497: monooxygenase activity	1.99E-02
51	GO:0005096: GTPase activator activity	2.01E-02
52	GO:0050897: cobalt ion binding	2.15E-02
53	GO:0046872: metal ion binding	2.43E-02
54	GO:0005506: iron ion binding	2.84E-02
55	GO:0051537: 2 iron, 2 sulfur cluster binding	2.91E-02
56	GO:0035091: phosphatidylinositol binding	2.91E-02
57	GO:0005198: structural molecule activity	2.99E-02
58	GO:0051287: NAD binding	3.15E-02
59	GO:0003824: catalytic activity	3.26E-02
60	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.92E-02
61	GO:0022857: transmembrane transporter activity	4.19E-02
62	GO:0051082: unfolded protein binding	4.37E-02
63	GO:0016887: ATPase activity	4.52E-02
64	GO:0003677: DNA binding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	7.05E-06
2	GO:0005845: mRNA cap binding complex	1.25E-04
3	GO:0005846: nuclear cap binding complex	2.90E-04
4	GO:0016605: PML body	4.78E-04
5	GO:0042651: thylakoid membrane	4.81E-04
6	GO:0030140: trans-Golgi network transport vesicle	1.41E-03
7	GO:0009840: chloroplastic endopeptidase Clp complex	1.68E-03
8	GO:0000123: histone acetyltransferase complex	1.98E-03
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.95E-03
10	GO:0016604: nuclear body	3.31E-03
11	GO:0005654: nucleoplasm	7.26E-03
12	GO:0005759: mitochondrial matrix	9.37E-03
13	GO:0009536: plastid	1.02E-02
14	GO:0009535: chloroplast thylakoid membrane	2.51E-02
15	GO:0005743: mitochondrial inner membrane	2.73E-02
16	GO:0031966: mitochondrial membrane	3.24E-02