co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0019323: pentose catabolic process	0.00E+00
5	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
6	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
7	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
8	GO:0006223: uracil salvage	0.00E+00
9	GO:0016553: base conversion or substitution editing	0.00E+00
10	GO:0006412: translation	6.44E-14
11	GO:0032544: plastid translation	1.18E-12
12	GO:0009735: response to cytokinin	1.25E-12
13	GO:0015979: photosynthesis	1.09E-10
14	GO:0042254: ribosome biogenesis	4.23E-10
15	GO:0009409: response to cold	1.66E-07
16	GO:0019464: glycine decarboxylation via glycine cleavage system	1.69E-07
17	GO:0042742: defense response to bacterium	2.11E-05
18	GO:0009658: chloroplast organization	2.89E-05
19	GO:0009817: defense response to fungus, incompatible interaction	3.66E-05
20	GO:0034599: cellular response to oxidative stress	6.30E-05
21	GO:0045454: cell redox homeostasis	7.96E-05
22	GO:0010196: nonphotochemical quenching	1.40E-04
23	GO:0043489: RNA stabilization	2.11E-04
24	GO:0044262: cellular carbohydrate metabolic process	2.11E-04
25	GO:0071588: hydrogen peroxide mediated signaling pathway	2.11E-04
26	GO:0010206: photosystem II repair	2.70E-04
27	GO:0055114: oxidation-reduction process	2.95E-04
28	GO:0010027: thylakoid membrane organization	3.27E-04
29	GO:0015995: chlorophyll biosynthetic process	4.04E-04
30	GO:0009773: photosynthetic electron transport in photosystem I	4.36E-04
31	GO:0043085: positive regulation of catalytic activity	4.36E-04
32	GO:0010270: photosystem II oxygen evolving complex assembly	4.71E-04
33	GO:0006518: peptide metabolic process	7.67E-04
34	GO:2001295: malonyl-CoA biosynthetic process	7.67E-04
35	GO:0048281: inflorescence morphogenesis	7.67E-04
36	GO:0006289: nucleotide-excision repair	8.76E-04
37	GO:0051085: chaperone mediated protein folding requiring cofactor	1.09E-03
38	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.09E-03
39	GO:0010148: transpiration	1.09E-03
40	GO:0010731: protein glutathionylation	1.09E-03
41	GO:0006424: glutamyl-tRNA aminoacylation	1.09E-03
42	GO:0010021: amylopectin biosynthetic process	1.45E-03
43	GO:0010037: response to carbon dioxide	1.45E-03
44	GO:0006808: regulation of nitrogen utilization	1.45E-03
45	GO:0015976: carbon utilization	1.45E-03
46	GO:0009765: photosynthesis, light harvesting	1.45E-03
47	GO:0006109: regulation of carbohydrate metabolic process	1.45E-03
48	GO:0045727: positive regulation of translation	1.45E-03
49	GO:2000122: negative regulation of stomatal complex development	1.45E-03
50	GO:0044206: UMP salvage	1.45E-03
51	GO:0006546: glycine catabolic process	1.45E-03
52	GO:0000413: protein peptidyl-prolyl isomerization	1.58E-03
53	GO:0006662: glycerol ether metabolic process	1.71E-03
54	GO:0032543: mitochondrial translation	1.85E-03
55	GO:0006461: protein complex assembly	1.85E-03
56	GO:0006544: glycine metabolic process	1.85E-03
57	GO:0043097: pyrimidine nucleoside salvage	1.85E-03
58	GO:0006979: response to oxidative stress	1.91E-03
59	GO:0019252: starch biosynthetic process	1.97E-03
60	GO:0000302: response to reactive oxygen species	2.10E-03
61	GO:0006563: L-serine metabolic process	2.28E-03
62	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.28E-03
63	GO:0000470: maturation of LSU-rRNA	2.28E-03
64	GO:0006828: manganese ion transport	2.28E-03
65	GO:0006206: pyrimidine nucleobase metabolic process	2.28E-03
66	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.74E-03
67	GO:0010019: chloroplast-nucleus signaling pathway	2.74E-03
68	GO:0010555: response to mannitol	2.74E-03
69	GO:0009955: adaxial/abaxial pattern specification	2.74E-03
70	GO:0042026: protein refolding	2.74E-03
71	GO:1901259: chloroplast rRNA processing	2.74E-03
72	GO:0009645: response to low light intensity stimulus	3.23E-03
73	GO:0010103: stomatal complex morphogenesis	3.23E-03
74	GO:0070370: cellular heat acclimation	3.23E-03
75	GO:0006633: fatty acid biosynthetic process	3.43E-03
76	GO:0005978: glycogen biosynthetic process	3.74E-03
77	GO:0009642: response to light intensity	3.74E-03
78	GO:0030091: protein repair	3.74E-03
79	GO:0007623: circadian rhythm	3.87E-03
80	GO:0001558: regulation of cell growth	4.29E-03
81	GO:0009657: plastid organization	4.29E-03
82	GO:0046686: response to cadmium ion	4.51E-03
83	GO:0009631: cold acclimation	4.55E-03
84	GO:0006783: heme biosynthetic process	4.85E-03
85	GO:0009853: photorespiration	4.99E-03
86	GO:0005982: starch metabolic process	5.44E-03
87	GO:0035999: tetrahydrofolate interconversion	5.44E-03
88	GO:0043069: negative regulation of programmed cell death	6.06E-03
89	GO:0006782: protoporphyrinogen IX biosynthetic process	6.06E-03
90	GO:0018119: peptidyl-cysteine S-nitrosylation	6.69E-03
91	GO:0016485: protein processing	6.69E-03
92	GO:0006816: calcium ion transport	6.69E-03
93	GO:0006415: translational termination	6.69E-03
94	GO:0009089: lysine biosynthetic process via diaminopimelate	6.69E-03
95	GO:0005983: starch catabolic process	7.36E-03
96	GO:0009767: photosynthetic electron transport chain	8.04E-03
97	GO:0010102: lateral root morphogenesis	8.04E-03
98	GO:0010020: chloroplast fission	8.75E-03
99	GO:0019253: reductive pentose-phosphate cycle	8.75E-03
100	GO:0051017: actin filament bundle assembly	1.10E-02
101	GO:0019344: cysteine biosynthetic process	1.10E-02
102	GO:0009116: nucleoside metabolic process	1.10E-02
103	GO:0000027: ribosomal large subunit assembly	1.10E-02
104	GO:0009944: polarity specification of adaxial/abaxial axis	1.10E-02
105	GO:0009768: photosynthesis, light harvesting in photosystem I	1.18E-02
106	GO:0051302: regulation of cell division	1.18E-02
107	GO:0006418: tRNA aminoacylation for protein translation	1.18E-02
108	GO:0016114: terpenoid biosynthetic process	1.26E-02
109	GO:0007005: mitochondrion organization	1.34E-02
110	GO:0001944: vasculature development	1.43E-02
111	GO:0006012: galactose metabolic process	1.43E-02
112	GO:0006284: base-excision repair	1.52E-02
113	GO:0008152: metabolic process	1.65E-02
114	GO:0006508: proteolysis	1.68E-02
115	GO:0042744: hydrogen peroxide catabolic process	1.77E-02
116	GO:0009790: embryo development	1.81E-02
117	GO:0015986: ATP synthesis coupled proton transport	1.88E-02
118	GO:0032502: developmental process	2.18E-02
119	GO:0030163: protein catabolic process	2.28E-02
120	GO:0009627: systemic acquired resistance	2.92E-02
121	GO:0018298: protein-chromophore linkage	3.27E-02
122	GO:0008219: cell death	3.27E-02
123	GO:0048481: plant ovule development	3.27E-02
124	GO:0010218: response to far red light	3.50E-02
125	GO:0010119: regulation of stomatal movement	3.62E-02
126	GO:0009637: response to blue light	3.86E-02
127	GO:0045087: innate immune response	3.86E-02
128	GO:0080167: response to karrikin	4.11E-02
129	GO:0006457: protein folding	4.12E-02
130	GO:0006631: fatty acid metabolic process	4.37E-02
131	GO:0010114: response to red light	4.63E-02
132	GO:0009644: response to high light intensity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0051738: xanthophyll binding	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
5	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
6	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
9	GO:0019843: rRNA binding	5.61E-20
10	GO:0003735: structural constituent of ribosome	4.70E-17
11	GO:0008266: poly(U) RNA binding	5.99E-07
12	GO:0051920: peroxiredoxin activity	1.32E-06
13	GO:0016209: antioxidant activity	3.28E-06
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.40E-06
15	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.76E-05
16	GO:0005528: FK506 binding	5.12E-05
17	GO:0004130: cytochrome-c peroxidase activity	7.64E-05
18	GO:0019203: carbohydrate phosphatase activity	2.11E-04
19	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	2.11E-04
20	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.11E-04
21	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.11E-04
22	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.11E-04
23	GO:0080132: fatty acid alpha-hydroxylase activity	2.11E-04
24	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.11E-04
25	GO:0004856: xylulokinase activity	2.11E-04
26	GO:0004853: uroporphyrinogen decarboxylase activity	2.11E-04
27	GO:0009496: plastoquinol--plastocyanin reductase activity	2.11E-04
28	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	2.11E-04
29	GO:0008047: enzyme activator activity	3.76E-04
30	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.71E-04
31	GO:0004618: phosphoglycerate kinase activity	4.71E-04
32	GO:0033201: alpha-1,4-glucan synthase activity	4.71E-04
33	GO:0004750: ribulose-phosphate 3-epimerase activity	4.71E-04
34	GO:0018708: thiol S-methyltransferase activity	4.71E-04
35	GO:0008967: phosphoglycolate phosphatase activity	4.71E-04
36	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	4.71E-04
37	GO:0004222: metalloendopeptidase activity	5.23E-04
38	GO:0004075: biotin carboxylase activity	7.67E-04
39	GO:0045174: glutathione dehydrogenase (ascorbate) activity	7.67E-04
40	GO:0030267: glyoxylate reductase (NADP) activity	7.67E-04
41	GO:0070402: NADPH binding	7.67E-04
42	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	7.67E-04
43	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	7.67E-04
44	GO:0004324: ferredoxin-NADP+ reductase activity	7.67E-04
45	GO:0004373: glycogen (starch) synthase activity	7.67E-04
46	GO:0017150: tRNA dihydrouridine synthase activity	7.67E-04
47	GO:0002161: aminoacyl-tRNA editing activity	7.67E-04
48	GO:0004148: dihydrolipoyl dehydrogenase activity	7.67E-04
49	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	7.67E-04
50	GO:0016491: oxidoreductase activity	9.46E-04
51	GO:0016149: translation release factor activity, codon specific	1.09E-03
52	GO:0043023: ribosomal large subunit binding	1.09E-03
53	GO:0016851: magnesium chelatase activity	1.09E-03
54	GO:0004601: peroxidase activity	1.30E-03
55	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.45E-03
56	GO:0042277: peptide binding	1.45E-03
57	GO:0004845: uracil phosphoribosyltransferase activity	1.45E-03
58	GO:0019104: DNA N-glycosylase activity	1.45E-03
59	GO:0019199: transmembrane receptor protein kinase activity	1.45E-03
60	GO:0009011: starch synthase activity	1.45E-03
61	GO:0047134: protein-disulfide reductase activity	1.47E-03
62	GO:0004791: thioredoxin-disulfide reductase activity	1.83E-03
63	GO:0050662: coenzyme binding	1.83E-03
64	GO:0003989: acetyl-CoA carboxylase activity	1.85E-03
65	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.85E-03
66	GO:0004372: glycine hydroxymethyltransferase activity	1.85E-03
67	GO:0003959: NADPH dehydrogenase activity	1.85E-03
68	GO:0016688: L-ascorbate peroxidase activity	2.28E-03
69	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.39E-03
70	GO:0004602: glutathione peroxidase activity	2.74E-03
71	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.74E-03
72	GO:0004849: uridine kinase activity	2.74E-03
73	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.74E-03
74	GO:0004252: serine-type endopeptidase activity	2.93E-03
75	GO:0016168: chlorophyll binding	3.20E-03
76	GO:0004034: aldose 1-epimerase activity	3.74E-03
77	GO:0008236: serine-type peptidase activity	3.75E-03
78	GO:0015078: hydrogen ion transmembrane transporter activity	4.29E-03
79	GO:0003747: translation release factor activity	4.85E-03
80	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.85E-03
81	GO:0047617: acyl-CoA hydrolase activity	5.44E-03
82	GO:0005384: manganese ion transmembrane transporter activity	5.44E-03
83	GO:0044183: protein binding involved in protein folding	6.69E-03
84	GO:0000049: tRNA binding	7.36E-03
85	GO:0004089: carbonate dehydratase activity	8.04E-03
86	GO:0015095: magnesium ion transmembrane transporter activity	8.04E-03
87	GO:0031072: heat shock protein binding	8.04E-03
88	GO:0031409: pigment binding	1.02E-02
89	GO:0004857: enzyme inhibitor activity	1.10E-02
90	GO:0051082: unfolded protein binding	1.24E-02
91	GO:0015035: protein disulfide oxidoreductase activity	1.27E-02
92	GO:0022891: substrate-specific transmembrane transporter activity	1.43E-02
93	GO:0004812: aminoacyl-tRNA ligase activity	1.61E-02
94	GO:0016853: isomerase activity	1.88E-02
95	GO:0048038: quinone binding	2.08E-02
96	GO:0051015: actin filament binding	2.28E-02
97	GO:0003684: damaged DNA binding	2.38E-02
98	GO:0008237: metallopeptidase activity	2.49E-02
99	GO:0030247: polysaccharide binding	3.04E-02
100	GO:0008168: methyltransferase activity	3.20E-02
101	GO:0003729: mRNA binding	4.03E-02
102	GO:0008233: peptidase activity	4.04E-02
103	GO:0004364: glutathione transferase activity	4.50E-02
104	GO:0051537: 2 iron, 2 sulfur cluster binding	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009507: chloroplast	1.90E-85
4	GO:0009570: chloroplast stroma	1.01E-72
5	GO:0009941: chloroplast envelope	4.23E-64
6	GO:0009534: chloroplast thylakoid	7.38E-45
7	GO:0009579: thylakoid	3.28E-43
8	GO:0009535: chloroplast thylakoid membrane	1.23E-37
9	GO:0005840: ribosome	2.51E-17
10	GO:0009543: chloroplast thylakoid lumen	5.94E-15
11	GO:0031977: thylakoid lumen	5.15E-14
12	GO:0010319: stromule	3.88E-12
13	GO:0010287: plastoglobule	5.67E-09
14	GO:0048046: apoplast	1.01E-07
15	GO:0009533: chloroplast stromal thylakoid	2.15E-06
16	GO:0005960: glycine cleavage complex	1.76E-05
17	GO:0016020: membrane	1.87E-05
18	GO:0009538: photosystem I reaction center	1.78E-04
19	GO:0009523: photosystem II	1.79E-04
20	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.11E-04
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.70E-04
22	GO:0009295: nucleoid	2.79E-04
23	GO:0009706: chloroplast inner membrane	2.87E-04
24	GO:0030093: chloroplast photosystem I	4.71E-04
25	GO:0000311: plastid large ribosomal subunit	4.99E-04
26	GO:0015934: large ribosomal subunit	5.55E-04
27	GO:0009508: plastid chromosome	5.67E-04
28	GO:0030095: chloroplast photosystem II	6.38E-04
29	GO:0010007: magnesium chelatase complex	7.67E-04
30	GO:0009536: plastid	8.10E-04
31	GO:0009654: photosystem II oxygen evolving complex	9.63E-04
32	GO:0009517: PSII associated light-harvesting complex II	1.45E-03
33	GO:0022626: cytosolic ribosome	1.79E-03
34	GO:0009512: cytochrome b6f complex	1.85E-03
35	GO:0022625: cytosolic large ribosomal subunit	1.95E-03
36	GO:0019898: extrinsic component of membrane	1.97E-03
37	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	2.28E-03
38	GO:0009840: chloroplastic endopeptidase Clp complex	2.74E-03
39	GO:0009501: amyloplast	3.74E-03
40	GO:0005763: mitochondrial small ribosomal subunit	4.85E-03
41	GO:0042644: chloroplast nucleoid	4.85E-03
42	GO:0000312: plastid small ribosomal subunit	8.75E-03
43	GO:0031969: chloroplast membrane	8.86E-03
44	GO:0030076: light-harvesting complex	9.48E-03
45	GO:0015935: small ribosomal subunit	1.26E-02
46	GO:0009532: plastid stroma	1.26E-02
47	GO:0015629: actin cytoskeleton	1.43E-02
48	GO:0009522: photosystem I	1.88E-02
49	GO:0005759: mitochondrial matrix	1.95E-02
50	GO:0030529: intracellular ribonucleoprotein complex	2.70E-02