co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63030

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0001881: receptor recycling	0.00E+00
2	GO:0032780: negative regulation of ATPase activity	0.00E+00
3	GO:0006721: terpenoid metabolic process	0.00E+00
4	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	4.47E-12
5	GO:0009853: photorespiration	1.37E-08
6	GO:0008333: endosome to lysosome transport	3.44E-06
7	GO:0015991: ATP hydrolysis coupled proton transport	5.20E-05
8	GO:0016487: farnesol metabolic process	1.35E-04
9	GO:0009240: isopentenyl diphosphate biosynthetic process	1.35E-04
10	GO:0031539: positive regulation of anthocyanin metabolic process	1.35E-04
11	GO:0031468: nuclear envelope reassembly	1.35E-04
12	GO:0016925: protein sumoylation	2.70E-04
13	GO:0055114: oxidation-reduction process	2.94E-04
14	GO:0006099: tricarboxylic acid cycle	2.98E-04
15	GO:0046939: nucleotide phosphorylation	3.11E-04
16	GO:0043255: regulation of carbohydrate biosynthetic process	3.11E-04
17	GO:0051252: regulation of RNA metabolic process	3.11E-04
18	GO:0050992: dimethylallyl diphosphate biosynthetic process	3.11E-04
19	GO:0015940: pantothenate biosynthetic process	5.13E-04
20	GO:0045793: positive regulation of cell size	5.13E-04
21	GO:0006760: folic acid-containing compound metabolic process	5.13E-04
22	GO:0015992: proton transport	5.84E-04
23	GO:0051603: proteolysis involved in cellular protein catabolic process	6.00E-04
24	GO:0032877: positive regulation of DNA endoreduplication	7.34E-04
25	GO:0006107: oxaloacetate metabolic process	7.34E-04
26	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	7.34E-04
27	GO:0009963: positive regulation of flavonoid biosynthetic process	7.34E-04
28	GO:1901332: negative regulation of lateral root development	7.34E-04
29	GO:0042147: retrograde transport, endosome to Golgi	8.13E-04
30	GO:0045454: cell redox homeostasis	9.25E-04
31	GO:0006662: glycerol ether metabolic process	9.40E-04
32	GO:0051781: positive regulation of cell division	9.73E-04
33	GO:0010387: COP9 signalosome assembly	9.73E-04
34	GO:0032366: intracellular sterol transport	9.73E-04
35	GO:0018344: protein geranylgeranylation	1.23E-03
36	GO:0006555: methionine metabolic process	1.51E-03
37	GO:0019509: L-methionine salvage from methylthioadenosine	1.81E-03
38	GO:0050790: regulation of catalytic activity	2.12E-03
39	GO:0000338: protein deneddylation	2.12E-03
40	GO:0006979: response to oxidative stress	2.25E-03
41	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.46E-03
42	GO:0006506: GPI anchor biosynthetic process	2.46E-03
43	GO:0000028: ribosomal small subunit assembly	2.46E-03
44	GO:0010099: regulation of photomorphogenesis	2.81E-03
45	GO:0022900: electron transport chain	2.81E-03
46	GO:0034599: cellular response to oxidative stress	2.82E-03
47	GO:0046685: response to arsenic-containing substance	3.17E-03
48	GO:0009821: alkaloid biosynthetic process	3.17E-03
49	GO:0006754: ATP biosynthetic process	3.17E-03
50	GO:0009640: photomorphogenesis	3.47E-03
51	GO:0043069: negative regulation of programmed cell death	3.95E-03
52	GO:0000103: sulfate assimilation	3.95E-03
53	GO:0010015: root morphogenesis	4.36E-03
54	GO:0009585: red, far-red light phototransduction	4.66E-03
55	GO:0006829: zinc II ion transport	5.22E-03
56	GO:0006807: nitrogen compound metabolic process	5.22E-03
57	GO:0006108: malate metabolic process	5.22E-03
58	GO:0006886: intracellular protein transport	5.25E-03
59	GO:0002237: response to molecule of bacterial origin	5.68E-03
60	GO:0007034: vacuolar transport	5.68E-03
61	GO:0007030: Golgi organization	6.14E-03
62	GO:0010039: response to iron ion	6.14E-03
63	GO:0042753: positive regulation of circadian rhythm	6.62E-03
64	GO:0006487: protein N-linked glycosylation	7.11E-03
65	GO:2000377: regulation of reactive oxygen species metabolic process	7.11E-03
66	GO:0008299: isoprenoid biosynthetic process	7.62E-03
67	GO:0010431: seed maturation	8.14E-03
68	GO:0061077: chaperone-mediated protein folding	8.14E-03
69	GO:0019748: secondary metabolic process	8.67E-03
70	GO:0010017: red or far-red light signaling pathway	8.67E-03
71	GO:0034220: ion transmembrane transport	1.09E-02
72	GO:0009958: positive gravitropism	1.15E-02
73	GO:0010150: leaf senescence	1.15E-02
74	GO:0061025: membrane fusion	1.21E-02
75	GO:0015986: ATP synthesis coupled proton transport	1.21E-02
76	GO:0009735: response to cytokinin	1.22E-02
77	GO:0006623: protein targeting to vacuole	1.27E-02
78	GO:0006914: autophagy	1.53E-02
79	GO:0010286: heat acclimation	1.60E-02
80	GO:0000910: cytokinesis	1.66E-02
81	GO:0009826: unidimensional cell growth	1.71E-02
82	GO:0046686: response to cadmium ion	1.72E-02
83	GO:0009615: response to virus	1.73E-02
84	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.80E-02
85	GO:0015995: chlorophyll biosynthetic process	1.95E-02
86	GO:0006950: response to stress	1.95E-02
87	GO:0010311: lateral root formation	2.17E-02
88	GO:0006499: N-terminal protein myristoylation	2.24E-02
89	GO:0010218: response to far red light	2.24E-02
90	GO:0010043: response to zinc ion	2.32E-02
91	GO:0016192: vesicle-mediated transport	2.32E-02
92	GO:0030001: metal ion transport	2.72E-02
93	GO:0010114: response to red light	2.97E-02
94	GO:0032259: methylation	3.12E-02
95	GO:0009753: response to jasmonic acid	3.49E-02
96	GO:0009809: lignin biosynthetic process	3.67E-02
97	GO:0010224: response to UV-B	3.76E-02
98	GO:0009620: response to fungus	4.42E-02
99	GO:0015031: protein transport	4.44E-02
100	GO:0009740: gibberellic acid mediated signaling pathway	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0050152: omega-amidase activity	0.00E+00
2	GO:0047886: farnesol dehydrogenase activity	0.00E+00
3	GO:0042030: ATPase inhibitor activity	0.00E+00
4	GO:0008137: NADH dehydrogenase (ubiquinone) activity	8.89E-12
5	GO:0031386: protein tag	2.48E-05
6	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	1.35E-04
7	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	1.35E-04
8	GO:0019707: protein-cysteine S-acyltransferase activity	1.35E-04
9	GO:0030611: arsenate reductase activity	1.35E-04
10	GO:0008794: arsenate reductase (glutaredoxin) activity	2.34E-04
11	GO:0050897: cobalt ion binding	2.48E-04
12	GO:0008428: ribonuclease inhibitor activity	3.11E-04
13	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	3.11E-04
14	GO:0052692: raffinose alpha-galactosidase activity	5.13E-04
15	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	5.13E-04
16	GO:0004557: alpha-galactosidase activity	5.13E-04
17	GO:0004663: Rab geranylgeranyltransferase activity	5.13E-04
18	GO:0016805: dipeptidase activity	5.13E-04
19	GO:0004298: threonine-type endopeptidase activity	5.84E-04
20	GO:0019201: nucleotide kinase activity	7.34E-04
21	GO:0047134: protein-disulfide reductase activity	8.13E-04
22	GO:0015035: protein disulfide oxidoreductase activity	9.24E-04
23	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.40E-04
24	GO:0010011: auxin binding	9.73E-04
25	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	9.73E-04
26	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	9.73E-04
27	GO:0004576: oligosaccharyl transferase activity	9.73E-04
28	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	9.73E-04
29	GO:0004791: thioredoxin-disulfide reductase activity	1.01E-03
30	GO:0008948: oxaloacetate decarboxylase activity	1.23E-03
31	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.23E-03
32	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.30E-03
33	GO:0051117: ATPase binding	1.51E-03
34	GO:0051920: peroxiredoxin activity	1.81E-03
35	GO:0004017: adenylate kinase activity	1.81E-03
36	GO:0008235: metalloexopeptidase activity	2.12E-03
37	GO:0008121: ubiquinol-cytochrome-c reductase activity	2.12E-03
38	GO:0008320: protein transmembrane transporter activity	2.12E-03
39	GO:0016209: antioxidant activity	2.46E-03
40	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.46E-03
41	GO:0015078: hydrogen ion transmembrane transporter activity	2.81E-03
42	GO:0051539: 4 iron, 4 sulfur cluster binding	3.07E-03
43	GO:0016788: hydrolase activity, acting on ester bonds	3.13E-03
44	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.17E-03
45	GO:0016844: strictosidine synthase activity	3.55E-03
46	GO:0047617: acyl-CoA hydrolase activity	3.55E-03
47	GO:0004177: aminopeptidase activity	4.36E-03
48	GO:0004129: cytochrome-c oxidase activity	4.36E-03
49	GO:0046961: proton-transporting ATPase activity, rotational mechanism	4.36E-03
50	GO:0004089: carbonate dehydratase activity	5.22E-03
51	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	5.68E-03
52	GO:0004725: protein tyrosine phosphatase activity	6.62E-03
53	GO:0043130: ubiquitin binding	7.11E-03
54	GO:0005528: FK506 binding	7.11E-03
55	GO:0046873: metal ion transmembrane transporter activity	1.15E-02
56	GO:0004527: exonuclease activity	1.15E-02
57	GO:0050662: coenzyme binding	1.21E-02
58	GO:0004872: receptor activity	1.27E-02
59	GO:0004197: cysteine-type endopeptidase activity	1.40E-02
60	GO:0008168: methyltransferase activity	1.71E-02
61	GO:0015250: water channel activity	1.73E-02
62	GO:0008233: peptidase activity	2.17E-02
63	GO:0004222: metalloendopeptidase activity	2.24E-02
64	GO:0030145: manganese ion binding	2.32E-02
65	GO:0016787: hydrolase activity	2.75E-02
66	GO:0004722: protein serine/threonine phosphatase activity	2.90E-02
67	GO:0004185: serine-type carboxypeptidase activity	2.97E-02
68	GO:0051537: 2 iron, 2 sulfur cluster binding	3.14E-02
69	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.31E-02
70	GO:0009055: electron carrier activity	3.49E-02
71	GO:0003690: double-stranded DNA binding	3.76E-02
72	GO:0008234: cysteine-type peptidase activity	3.95E-02
73	GO:0016491: oxidoreductase activity	4.64E-02
74	GO:0016746: transferase activity, transferring acyl groups	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain	0.00E+00
2	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
3	GO:0005747: mitochondrial respiratory chain complex I	1.62E-19
4	GO:0045271: respiratory chain complex I	4.47E-11
5	GO:0031966: mitochondrial membrane	6.54E-08
6	GO:0005773: vacuole	1.42E-07
7	GO:0045273: respiratory chain complex II	1.10E-06
8	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.10E-06
9	GO:0005739: mitochondrion	8.88E-06
10	GO:0005758: mitochondrial intermembrane space	1.91E-05
11	GO:0005771: multivesicular body	3.71E-05
12	GO:0030904: retromer complex	3.71E-05
13	GO:0005750: mitochondrial respiratory chain complex III	3.49E-04
14	GO:0005783: endoplasmic reticulum	3.64E-04
15	GO:0005753: mitochondrial proton-transporting ATP synthase complex	3.91E-04
16	GO:0005839: proteasome core complex	5.84E-04
17	GO:0005968: Rab-protein geranylgeranyltransferase complex	7.34E-04
18	GO:0016471: vacuolar proton-transporting V-type ATPase complex	9.73E-04
19	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	9.73E-04
20	GO:0033179: proton-transporting V-type ATPase, V0 domain	9.73E-04
21	GO:0005746: mitochondrial respiratory chain	1.23E-03
22	GO:0008250: oligosaccharyltransferase complex	1.23E-03
23	GO:0005789: endoplasmic reticulum membrane	1.25E-03
24	GO:0005829: cytosol	1.47E-03
25	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	1.51E-03
26	GO:0005788: endoplasmic reticulum lumen	1.74E-03
27	GO:0009507: chloroplast	1.91E-03
28	GO:0005774: vacuolar membrane	1.96E-03
29	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.12E-03
30	GO:0000421: autophagosome membrane	2.46E-03
31	GO:0000325: plant-type vacuole	2.46E-03
32	GO:0005763: mitochondrial small ribosomal subunit	3.17E-03
33	GO:0008180: COP9 signalosome	3.17E-03
34	GO:0031902: late endosome membrane	3.20E-03
35	GO:0000502: proteasome complex	4.66E-03
36	GO:0005764: lysosome	5.68E-03
37	GO:0070469: respiratory chain	7.62E-03
38	GO:0031410: cytoplasmic vesicle	8.67E-03
39	GO:0016020: membrane	1.03E-02
40	GO:0005759: mitochondrial matrix	1.04E-02
41	GO:0009536: plastid	1.20E-02
42	GO:0005794: Golgi apparatus	1.20E-02
43	GO:0032580: Golgi cisterna membrane	1.53E-02
44	GO:0043231: intracellular membrane-bounded organelle	3.59E-02