co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G62810

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042908: xenobiotic transport	0.00E+00
2	GO:0015822: ornithine transport	0.00E+00
3	GO:0010202: response to low fluence red light stimulus	0.00E+00
4	GO:0017012: protein-phytochromobilin linkage	0.00E+00
5	GO:0015746: citrate transport	0.00E+00
6	GO:0009649: entrainment of circadian clock	1.29E-05
7	GO:0010265: SCF complex assembly	1.23E-04
8	GO:1990542: mitochondrial transmembrane transport	1.23E-04
9	GO:0000066: mitochondrial ornithine transport	1.23E-04
10	GO:0097502: mannosylation	1.23E-04
11	GO:0006007: glucose catabolic process	1.23E-04
12	GO:0031468: nuclear envelope reassembly	1.23E-04
13	GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport	1.23E-04
14	GO:0010617: circadian regulation of calcium ion oscillation	2.86E-04
15	GO:0006432: phenylalanyl-tRNA aminoacylation	2.86E-04
16	GO:0006420: arginyl-tRNA aminoacylation	2.86E-04
17	GO:0030010: establishment of cell polarity	2.86E-04
18	GO:0044419: interspecies interaction between organisms	2.86E-04
19	GO:0045793: positive regulation of cell size	4.72E-04
20	GO:0006760: folic acid-containing compound metabolic process	4.72E-04
21	GO:0060145: viral gene silencing in virus induced gene silencing	4.72E-04
22	GO:0070919: production of siRNA involved in chromatin silencing by small RNA	4.72E-04
23	GO:0006012: galactose metabolic process	6.14E-04
24	GO:0032877: positive regulation of DNA endoreduplication	6.76E-04
25	GO:0051259: protein oligomerization	6.76E-04
26	GO:0006107: oxaloacetate metabolic process	6.76E-04
27	GO:0009584: detection of visible light	6.76E-04
28	GO:0006241: CTP biosynthetic process	6.76E-04
29	GO:0006165: nucleoside diphosphate phosphorylation	6.76E-04
30	GO:0006228: UTP biosynthetic process	6.76E-04
31	GO:0010148: transpiration	6.76E-04
32	GO:0009963: positive regulation of flavonoid biosynthetic process	6.76E-04
33	GO:0009647: skotomorphogenesis	6.76E-04
34	GO:0015700: arsenite transport	6.76E-04
35	GO:0045454: cell redox homeostasis	7.65E-04
36	GO:0044205: 'de novo' UMP biosynthetic process	8.97E-04
37	GO:0009687: abscisic acid metabolic process	8.97E-04
38	GO:0051781: positive regulation of cell division	8.97E-04
39	GO:0006183: GTP biosynthetic process	8.97E-04
40	GO:0006221: pyrimidine nucleotide biosynthetic process	8.97E-04
41	GO:0006749: glutathione metabolic process	8.97E-04
42	GO:0046283: anthocyanin-containing compound metabolic process	1.13E-03
43	GO:0009117: nucleotide metabolic process	1.39E-03
44	GO:0006014: D-ribose metabolic process	1.39E-03
45	GO:0034314: Arp2/3 complex-mediated actin nucleation	1.39E-03
46	GO:0016126: sterol biosynthetic process	1.45E-03
47	GO:0010029: regulation of seed germination	1.53E-03
48	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.66E-03
49	GO:0042742: defense response to bacterium	1.77E-03
50	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.95E-03
51	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.95E-03
52	GO:0010044: response to aluminum ion	1.95E-03
53	GO:0010374: stomatal complex development	1.95E-03
54	GO:0010161: red light signaling pathway	1.95E-03
55	GO:0006826: iron ion transport	1.95E-03
56	GO:0032875: regulation of DNA endoreduplication	2.26E-03
57	GO:0000028: ribosomal small subunit assembly	2.26E-03
58	GO:0009231: riboflavin biosynthetic process	2.26E-03
59	GO:0009826: unidimensional cell growth	2.48E-03
60	GO:0006526: arginine biosynthetic process	2.58E-03
61	GO:0009880: embryonic pattern specification	2.58E-03
62	GO:0006839: mitochondrial transport	2.71E-03
63	GO:0009060: aerobic respiration	2.91E-03
64	GO:0098656: anion transmembrane transport	2.91E-03
65	GO:0046685: response to arsenic-containing substance	2.91E-03
66	GO:0009640: photomorphogenesis	3.06E-03
67	GO:0009638: phototropism	3.26E-03
68	GO:0010267: production of ta-siRNAs involved in RNA interference	3.26E-03
69	GO:0042761: very long-chain fatty acid biosynthetic process	3.26E-03
70	GO:0006349: regulation of gene expression by genetic imprinting	3.26E-03
71	GO:0006855: drug transmembrane transport	3.56E-03
72	GO:0009641: shade avoidance	3.62E-03
73	GO:0010048: vernalization response	3.62E-03
74	GO:0006325: chromatin organization	3.62E-03
75	GO:0072593: reactive oxygen species metabolic process	4.00E-03
76	GO:0052544: defense response by callose deposition in cell wall	4.00E-03
77	GO:0009585: red, far-red light phototransduction	4.11E-03
78	GO:0006820: anion transport	4.39E-03
79	GO:0045037: protein import into chloroplast stroma	4.39E-03
80	GO:0006807: nitrogen compound metabolic process	4.79E-03
81	GO:0006108: malate metabolic process	4.79E-03
82	GO:0006006: glucose metabolic process	4.79E-03
83	GO:2000028: regulation of photoperiodism, flowering	4.79E-03
84	GO:0050826: response to freezing	4.79E-03
85	GO:0006094: gluconeogenesis	4.79E-03
86	GO:0006096: glycolytic process	4.85E-03
87	GO:0007015: actin filament organization	5.20E-03
88	GO:0009266: response to temperature stimulus	5.20E-03
89	GO:0032259: methylation	5.30E-03
90	GO:0019853: L-ascorbic acid biosynthetic process	5.63E-03
91	GO:0010039: response to iron ion	5.63E-03
92	GO:0007030: Golgi organization	5.63E-03
93	GO:0010167: response to nitrate	5.63E-03
94	GO:0006071: glycerol metabolic process	6.06E-03
95	GO:0034976: response to endoplasmic reticulum stress	6.06E-03
96	GO:0006289: nucleotide-excision repair	6.51E-03
97	GO:0061077: chaperone-mediated protein folding	7.45E-03
98	GO:0080092: regulation of pollen tube growth	7.93E-03
99	GO:0016226: iron-sulfur cluster assembly	7.93E-03
100	GO:0080022: primary root development	9.99E-03
101	GO:0000413: protein peptidyl-prolyl isomerization	9.99E-03
102	GO:0010051: xylem and phloem pattern formation	9.99E-03
103	GO:0010118: stomatal movement	9.99E-03
104	GO:0042391: regulation of membrane potential	9.99E-03
105	GO:0009960: endosperm development	1.05E-02
106	GO:0061025: membrane fusion	1.11E-02
107	GO:0009617: response to bacterium	1.20E-02
108	GO:0016132: brassinosteroid biosynthetic process	1.22E-02
109	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.22E-02
110	GO:0009630: gravitropism	1.28E-02
111	GO:1901657: glycosyl compound metabolic process	1.34E-02
112	GO:0010286: heat acclimation	1.46E-02
113	GO:0051607: defense response to virus	1.52E-02
114	GO:0000910: cytokinesis	1.52E-02
115	GO:0042254: ribosome biogenesis	1.59E-02
116	GO:0006457: protein folding	1.61E-02
117	GO:0042128: nitrate assimilation	1.71E-02
118	GO:0006974: cellular response to DNA damage stimulus	1.71E-02
119	GO:0048573: photoperiodism, flowering	1.78E-02
120	GO:0018298: protein-chromophore linkage	1.91E-02
121	GO:0010218: response to far red light	2.05E-02
122	GO:0006499: N-terminal protein myristoylation	2.05E-02
123	GO:0009407: toxin catabolic process	2.05E-02
124	GO:0048527: lateral root development	2.12E-02
125	GO:0010119: regulation of stomatal movement	2.12E-02
126	GO:0045087: innate immune response	2.26E-02
127	GO:0009867: jasmonic acid mediated signaling pathway	2.26E-02
128	GO:0009926: auxin polar transport	2.71E-02
129	GO:0009408: response to heat	2.87E-02
130	GO:0009636: response to toxic substance	2.95E-02
131	GO:0048364: root development	2.99E-02
132	GO:0031347: regulation of defense response	3.11E-02
133	GO:0008152: metabolic process	3.16E-02
134	GO:0009736: cytokinin-activated signaling pathway	3.35E-02
135	GO:0006486: protein glycosylation	3.35E-02
136	GO:0010224: response to UV-B	3.44E-02
137	GO:0009626: plant-type hypersensitive response	3.95E-02
138	GO:0009620: response to fungus	4.04E-02
139	GO:0009409: response to cold	4.10E-02
140	GO:0051726: regulation of cell cycle	4.49E-02
141	GO:0006810: transport	4.53E-02
142	GO:0009735: response to cytokinin	4.63E-02
143	GO:0005975: carbohydrate metabolic process	4.72E-02
144	GO:0046686: response to cadmium ion	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity	0.00E+00
2	GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity	0.00E+00
3	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
4	GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
5	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
6	GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
7	GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	0.00E+00
8	GO:0052925: dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity	0.00E+00
9	GO:0000033: alpha-1,3-mannosyltransferase activity	0.00E+00
10	GO:0050152: omega-amidase activity	0.00E+00
11	GO:0004746: riboflavin synthase activity	0.00E+00
12	GO:0031517: red light photoreceptor activity	0.00E+00
13	GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	0.00E+00
14	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
15	GO:0004151: dihydroorotase activity	0.00E+00
16	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
17	GO:0004034: aldose 1-epimerase activity	7.88E-05
18	GO:0003838: sterol 24-C-methyltransferase activity	1.23E-04
19	GO:0071992: phytochelatin transmembrane transporter activity	1.23E-04
20	GO:0031516: far-red light photoreceptor activity	1.23E-04
21	GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity	1.23E-04
22	GO:0000248: C-5 sterol desaturase activity	1.23E-04
23	GO:0080048: GDP-D-glucose phosphorylase activity	1.23E-04
24	GO:0046480: galactolipid galactosyltransferase activity	1.23E-04
25	GO:0015137: citrate transmembrane transporter activity	1.23E-04
26	GO:0080079: cellobiose glucosidase activity	1.23E-04
27	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	1.23E-04
28	GO:0030544: Hsp70 protein binding	1.23E-04
29	GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity	1.23E-04
30	GO:0080047: GDP-L-galactose phosphorylase activity	1.23E-04
31	GO:1990841: promoter-specific chromatin binding	1.23E-04
32	GO:0052917: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity	1.23E-04
33	GO:0009883: red or far-red light photoreceptor activity	2.86E-04
34	GO:0004814: arginine-tRNA ligase activity	2.86E-04
35	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	2.86E-04
36	GO:0000064: L-ornithine transmembrane transporter activity	2.86E-04
37	GO:0004826: phenylalanine-tRNA ligase activity	2.86E-04
38	GO:1990585: hydroxyproline O-arabinosyltransferase activity	2.86E-04
39	GO:0043130: ubiquitin binding	4.26E-04
40	GO:0008020: G-protein coupled photoreceptor activity	4.72E-04
41	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.72E-04
42	GO:0052692: raffinose alpha-galactosidase activity	4.72E-04
43	GO:0004557: alpha-galactosidase activity	4.72E-04
44	GO:0004298: threonine-type endopeptidase activity	5.17E-04
45	GO:0004550: nucleoside diphosphate kinase activity	6.76E-04
46	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	6.76E-04
47	GO:0017077: oxidative phosphorylation uncoupler activity	6.76E-04
48	GO:0035529: NADH pyrophosphatase activity	6.76E-04
49	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	8.97E-04
50	GO:0010011: auxin binding	8.97E-04
51	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	8.97E-04
52	GO:0051117: ATPase binding	1.39E-03
53	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.39E-03
54	GO:0008375: acetylglucosaminyltransferase activity	1.62E-03
55	GO:0004747: ribokinase activity	1.66E-03
56	GO:0005261: cation channel activity	1.66E-03
57	GO:0008143: poly(A) binding	1.95E-03
58	GO:0005085: guanyl-nucleotide exchange factor activity	1.95E-03
59	GO:0042802: identical protein binding	2.03E-03
60	GO:0015288: porin activity	2.26E-03
61	GO:0008308: voltage-gated anion channel activity	2.58E-03
62	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.91E-03
63	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.56E-03
64	GO:0004673: protein histidine kinase activity	3.62E-03
65	GO:0008047: enzyme activator activity	3.62E-03
66	GO:0008559: xenobiotic-transporting ATPase activity	4.00E-03
67	GO:0004129: cytochrome-c oxidase activity	4.00E-03
68	GO:0008794: arsenate reductase (glutaredoxin) activity	4.00E-03
69	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.00E-03
70	GO:0008378: galactosyltransferase activity	4.39E-03
71	GO:0000049: tRNA binding	4.39E-03
72	GO:0000155: phosphorelay sensor kinase activity	4.79E-03
73	GO:0003725: double-stranded RNA binding	4.79E-03
74	GO:0004175: endopeptidase activity	5.20E-03
75	GO:0022857: transmembrane transporter activity	5.49E-03
76	GO:0030552: cAMP binding	5.63E-03
77	GO:0030553: cGMP binding	5.63E-03
78	GO:0015035: protein disulfide oxidoreductase activity	6.00E-03
79	GO:0005528: FK506 binding	6.51E-03
80	GO:0005216: ion channel activity	6.98E-03
81	GO:0003727: single-stranded RNA binding	8.93E-03
82	GO:0003756: protein disulfide isomerase activity	8.93E-03
83	GO:0018024: histone-lysine N-methyltransferase activity	9.45E-03
84	GO:0005249: voltage-gated potassium channel activity	9.99E-03
85	GO:0030551: cyclic nucleotide binding	9.99E-03
86	GO:0016853: isomerase activity	1.11E-02
87	GO:0004872: receptor activity	1.16E-02
88	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.34E-02
89	GO:0051015: actin filament binding	1.34E-02
90	GO:0016757: transferase activity, transferring glycosyl groups	1.49E-02
91	GO:0008168: methyltransferase activity	1.51E-02
92	GO:0016597: amino acid binding	1.52E-02
93	GO:0008236: serine-type peptidase activity	1.85E-02
94	GO:0015238: drug transmembrane transporter activity	1.98E-02
95	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.05E-02
96	GO:0030145: manganese ion binding	2.12E-02
97	GO:0050897: cobalt ion binding	2.12E-02
98	GO:0008422: beta-glucosidase activity	2.41E-02
99	GO:0050661: NADP binding	2.48E-02
100	GO:0051539: 4 iron, 4 sulfur cluster binding	2.48E-02
101	GO:0004364: glutathione transferase activity	2.63E-02
102	GO:0004185: serine-type carboxypeptidase activity	2.71E-02
103	GO:0051537: 2 iron, 2 sulfur cluster binding	2.87E-02
104	GO:0043621: protein self-association	2.87E-02
105	GO:0035091: phosphatidylinositol binding	2.87E-02
106	GO:0009055: electron carrier activity	3.08E-02
107	GO:0051287: NAD binding	3.11E-02
108	GO:0005515: protein binding	3.36E-02
109	GO:0016491: oxidoreductase activity	3.97E-02
110	GO:0004386: helicase activity	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0005675: holo TFIIH complex	0.00E+00
2	GO:0005829: cytosol	1.01E-06
3	GO:0019773: proteasome core complex, alpha-subunit complex	9.94E-05
4	GO:0000152: nuclear ubiquitin ligase complex	1.23E-04
5	GO:0016604: nuclear body	1.48E-04
6	GO:0031519: PcG protein complex	4.72E-04
7	GO:0000439: core TFIIH complex	4.72E-04
8	GO:0000502: proteasome complex	4.90E-04
9	GO:0005839: proteasome core complex	5.17E-04
10	GO:0009536: plastid	6.30E-04
11	GO:0031897: Tic complex	8.97E-04
12	GO:0005743: mitochondrial inner membrane	9.38E-04
13	GO:0005746: mitochondrial respiratory chain	1.13E-03
14	GO:0005773: vacuole	1.21E-03
15	GO:0005885: Arp2/3 protein complex	1.66E-03
16	GO:0005801: cis-Golgi network	1.66E-03
17	GO:0031359: integral component of chloroplast outer membrane	1.95E-03
18	GO:0046930: pore complex	2.58E-03
19	GO:0005677: chromatin silencing complex	2.58E-03
20	GO:0005763: mitochondrial small ribosomal subunit	2.91E-03
21	GO:0016607: nuclear speck	5.00E-03
22	GO:0005764: lysosome	5.20E-03
23	GO:0009507: chloroplast	5.79E-03
24	GO:0005758: mitochondrial intermembrane space	6.51E-03
25	GO:0005783: endoplasmic reticulum	6.78E-03
26	GO:0005741: mitochondrial outer membrane	7.45E-03
27	GO:0009506: plasmodesma	1.05E-02
28	GO:0005774: vacuolar membrane	1.54E-02
29	GO:0005788: endoplasmic reticulum lumen	1.65E-02
30	GO:0009707: chloroplast outer membrane	1.91E-02
31	GO:0005618: cell wall	1.94E-02
32	GO:0000325: plant-type vacuole	2.12E-02
33	GO:0005739: mitochondrion	2.34E-02
34	GO:0009941: chloroplast envelope	2.59E-02
35	GO:0005737: cytoplasm	3.85E-02
36	GO:0010008: endosome membrane	3.86E-02
37	GO:0009706: chloroplast inner membrane	4.31E-02
38	GO:0009570: chloroplast stroma	4.48E-02
39	GO:0005794: Golgi apparatus	4.76E-02
40	GO:0005789: endoplasmic reticulum membrane	4.76E-02
41	GO:0022626: cytosolic ribosome	4.84E-02
42	GO:0048046: apoplast	4.91E-02