co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G62680

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042430: indole-containing compound metabolic process	0.00E+00
2	GO:0023052: signaling	0.00E+00
3	GO:0030149: sphingolipid catabolic process	0.00E+00
4	GO:0042362: fat-soluble vitamin biosynthetic process	0.00E+00
5	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
6	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
7	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
8	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
9	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
10	GO:0009264: deoxyribonucleotide catabolic process	0.00E+00
11	GO:0046487: glyoxylate metabolic process	0.00E+00
12	GO:0042254: ribosome biogenesis	3.00E-08
13	GO:0006412: translation	1.69E-07
14	GO:0006820: anion transport	6.05E-07
15	GO:0006099: tricarboxylic acid cycle	6.61E-06
16	GO:0055114: oxidation-reduction process	8.77E-06
17	GO:0042744: hydrogen peroxide catabolic process	1.09E-05
18	GO:0009651: response to salt stress	1.19E-05
19	GO:0006869: lipid transport	2.76E-05
20	GO:0046686: response to cadmium ion	5.33E-05
21	GO:0006979: response to oxidative stress	5.78E-05
22	GO:0006564: L-serine biosynthetic process	7.11E-05
23	GO:0006097: glyoxylate cycle	7.11E-05
24	GO:0009735: response to cytokinin	1.48E-04
25	GO:0006102: isocitrate metabolic process	2.38E-04
26	GO:1901430: positive regulation of syringal lignin biosynthetic process	2.55E-04
27	GO:0009852: auxin catabolic process	2.55E-04
28	GO:0032365: intracellular lipid transport	2.55E-04
29	GO:0042964: thioredoxin reduction	2.55E-04
30	GO:0015812: gamma-aminobutyric acid transport	2.55E-04
31	GO:0019605: butyrate metabolic process	2.55E-04
32	GO:0015798: myo-inositol transport	2.55E-04
33	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	2.55E-04
34	GO:0006083: acetate metabolic process	2.55E-04
35	GO:0006106: fumarate metabolic process	2.55E-04
36	GO:1990542: mitochondrial transmembrane transport	2.55E-04
37	GO:0009820: alkaloid metabolic process	2.55E-04
38	GO:0010365: positive regulation of ethylene biosynthetic process	2.55E-04
39	GO:0098656: anion transmembrane transport	3.55E-04
40	GO:0009915: phloem sucrose loading	5.64E-04
41	GO:0006101: citrate metabolic process	5.64E-04
42	GO:0015786: UDP-glucose transport	5.64E-04
43	GO:0019752: carboxylic acid metabolic process	5.64E-04
44	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.64E-04
45	GO:1990069: stomatal opening	5.64E-04
46	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	5.64E-04
47	GO:0009058: biosynthetic process	6.81E-04
48	GO:0002237: response to molecule of bacterial origin	8.30E-04
49	GO:0009853: photorespiration	8.78E-04
50	GO:1902626: assembly of large subunit precursor of preribosome	9.15E-04
51	GO:0008652: cellular amino acid biosynthetic process	9.15E-04
52	GO:0015783: GDP-fucose transport	9.15E-04
53	GO:0072334: UDP-galactose transmembrane transport	1.31E-03
54	GO:0001676: long-chain fatty acid metabolic process	1.31E-03
55	GO:0046836: glycolipid transport	1.31E-03
56	GO:0009413: response to flooding	1.31E-03
57	GO:0009617: response to bacterium	1.33E-03
58	GO:0015992: proton transport	1.37E-03
59	GO:0048511: rhythmic process	1.37E-03
60	GO:0010363: regulation of plant-type hypersensitive response	1.75E-03
61	GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter	1.75E-03
62	GO:0051365: cellular response to potassium ion starvation	1.75E-03
63	GO:0051603: proteolysis involved in cellular protein catabolic process	1.83E-03
64	GO:0009409: response to cold	1.84E-03
65	GO:0015991: ATP hydrolysis coupled proton transport	2.07E-03
66	GO:0006096: glycolytic process	2.17E-03
67	GO:0009697: salicylic acid biosynthetic process	2.23E-03
68	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.23E-03
69	GO:1902183: regulation of shoot apical meristem development	2.23E-03
70	GO:0009228: thiamine biosynthetic process	2.75E-03
71	GO:0002238: response to molecule of fungal origin	2.75E-03
72	GO:0009635: response to herbicide	2.75E-03
73	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.30E-03
74	GO:0010189: vitamin E biosynthetic process	3.30E-03
75	GO:0009648: photoperiodism	3.30E-03
76	GO:1900056: negative regulation of leaf senescence	3.89E-03
77	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.89E-03
78	GO:0050829: defense response to Gram-negative bacterium	3.89E-03
79	GO:0009610: response to symbiotic fungus	3.89E-03
80	GO:0009642: response to light intensity	4.52E-03
81	GO:0048658: anther wall tapetum development	4.52E-03
82	GO:0006644: phospholipid metabolic process	4.52E-03
83	GO:0019430: removal of superoxide radicals	5.18E-03
84	GO:0006367: transcription initiation from RNA polymerase II promoter	5.18E-03
85	GO:0009813: flavonoid biosynthetic process	5.44E-03
86	GO:0010150: leaf senescence	5.49E-03
87	GO:0006811: ion transport	5.71E-03
88	GO:0009245: lipid A biosynthetic process	5.86E-03
89	GO:0080144: amino acid homeostasis	5.86E-03
90	GO:0034765: regulation of ion transmembrane transport	5.86E-03
91	GO:0006754: ATP biosynthetic process	5.86E-03
92	GO:0009060: aerobic respiration	5.86E-03
93	GO:0015780: nucleotide-sugar transport	5.86E-03
94	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.58E-03
95	GO:0006032: chitin catabolic process	7.33E-03
96	GO:0010192: mucilage biosynthetic process	7.33E-03
97	GO:0006631: fatty acid metabolic process	7.80E-03
98	GO:0009682: induced systemic resistance	8.11E-03
99	GO:0072593: reactive oxygen species metabolic process	8.11E-03
100	GO:0000272: polysaccharide catabolic process	8.11E-03
101	GO:0012501: programmed cell death	8.92E-03
102	GO:0015706: nitrate transport	8.92E-03
103	GO:0008361: regulation of cell size	8.92E-03
104	GO:0009636: response to toxic substance	9.53E-03
105	GO:0010102: lateral root morphogenesis	9.75E-03
106	GO:0006807: nitrogen compound metabolic process	9.75E-03
107	GO:0006626: protein targeting to mitochondrion	9.75E-03
108	GO:0006108: malate metabolic process	9.75E-03
109	GO:0006006: glucose metabolic process	9.75E-03
110	GO:0006855: drug transmembrane transport	9.89E-03
111	GO:0009414: response to water deprivation	1.03E-02
112	GO:0009266: response to temperature stimulus	1.06E-02
113	GO:0042343: indole glucosinolate metabolic process	1.15E-02
114	GO:0010167: response to nitrate	1.15E-02
115	GO:0090351: seedling development	1.15E-02
116	GO:0009611: response to wounding	1.23E-02
117	GO:0006636: unsaturated fatty acid biosynthetic process	1.24E-02
118	GO:0000027: ribosomal large subunit assembly	1.34E-02
119	GO:0030150: protein import into mitochondrial matrix	1.34E-02
120	GO:0006289: nucleotide-excision repair	1.34E-02
121	GO:0044550: secondary metabolite biosynthetic process	1.40E-02
122	GO:0009737: response to abscisic acid	1.42E-02
123	GO:0098542: defense response to other organism	1.53E-02
124	GO:0009624: response to nematode	1.63E-02
125	GO:0016226: iron-sulfur cluster assembly	1.64E-02
126	GO:0035428: hexose transmembrane transport	1.64E-02
127	GO:0030245: cellulose catabolic process	1.64E-02
128	GO:0009625: response to insect	1.74E-02
129	GO:0010584: pollen exine formation	1.85E-02
130	GO:0006817: phosphate ion transport	1.85E-02
131	GO:0009561: megagametogenesis	1.85E-02
132	GO:0010089: xylem development	1.85E-02
133	GO:0042631: cellular response to water deprivation	2.07E-02
134	GO:0042391: regulation of membrane potential	2.07E-02
135	GO:0080022: primary root development	2.07E-02
136	GO:0000413: protein peptidyl-prolyl isomerization	2.07E-02
137	GO:0010118: stomatal movement	2.07E-02
138	GO:0006520: cellular amino acid metabolic process	2.18E-02
139	GO:0048364: root development	2.18E-02
140	GO:0010197: polar nucleus fusion	2.18E-02
141	GO:0048868: pollen tube development	2.18E-02
142	GO:0046323: glucose import	2.18E-02
143	GO:0015986: ATP synthesis coupled proton transport	2.29E-02
144	GO:0009749: response to glucose	2.41E-02
145	GO:0008654: phospholipid biosynthetic process	2.41E-02
146	GO:0000302: response to reactive oxygen species	2.53E-02
147	GO:0010193: response to ozone	2.53E-02
148	GO:0006635: fatty acid beta-oxidation	2.53E-02
149	GO:0006413: translational initiation	2.64E-02
150	GO:0010252: auxin homeostasis	2.90E-02
151	GO:0071805: potassium ion transmembrane transport	3.03E-02
152	GO:0010029: regulation of seed germination	3.42E-02
153	GO:0009607: response to biotic stimulus	3.42E-02
154	GO:0042128: nitrate assimilation	3.56E-02
155	GO:0016049: cell growth	3.83E-02
156	GO:0030244: cellulose biosynthetic process	3.97E-02
157	GO:0010119: regulation of stomatal movement	4.41E-02
158	GO:0010043: response to zinc ion	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
2	GO:0070401: NADP+ binding	0.00E+00
3	GO:0033919: glucan 1,3-alpha-glucosidase activity	0.00E+00
4	GO:0015926: glucosidase activity	0.00E+00
5	GO:0010176: homogentisate phytyltransferase activity	0.00E+00
6	GO:0003796: lysozyme activity	0.00E+00
7	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
8	GO:0016229: steroid dehydrogenase activity	0.00E+00
9	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
10	GO:0003735: structural constituent of ribosome	1.58E-11
11	GO:0015288: porin activity	4.91E-08
12	GO:0008308: voltage-gated anion channel activity	8.30E-08
13	GO:0005507: copper ion binding	2.09E-06
14	GO:0004617: phosphoglycerate dehydrogenase activity	3.02E-06
15	GO:0020037: heme binding	5.59E-05
16	GO:0004601: peroxidase activity	5.90E-05
17	GO:0008289: lipid binding	9.88E-05
18	GO:0004298: threonine-type endopeptidase activity	1.04E-04
19	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.04E-04
20	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.04E-04
21	GO:0051287: NAD binding	2.11E-04
22	GO:0004033: aldo-keto reductase (NADP) activity	2.38E-04
23	GO:0050200: plasmalogen synthase activity	2.55E-04
24	GO:0047760: butyrate-CoA ligase activity	2.55E-04
25	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	2.55E-04
26	GO:0016682: oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	2.55E-04
27	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.55E-04
28	GO:0004333: fumarate hydratase activity	2.55E-04
29	GO:0003987: acetate-CoA ligase activity	2.55E-04
30	GO:0032934: sterol binding	5.64E-04
31	GO:0047517: 1,4-beta-D-xylan synthase activity	5.64E-04
32	GO:0019172: glyoxalase III activity	5.64E-04
33	GO:0005366: myo-inositol:proton symporter activity	5.64E-04
34	GO:0008517: folic acid transporter activity	5.64E-04
35	GO:0004634: phosphopyruvate hydratase activity	5.64E-04
36	GO:0004618: phosphoglycerate kinase activity	5.64E-04
37	GO:0004047: aminomethyltransferase activity	5.64E-04
38	GO:0003994: aconitate hydratase activity	5.64E-04
39	GO:0008253: 5'-nucleotidase activity	9.15E-04
40	GO:0004148: dihydrolipoyl dehydrogenase activity	9.15E-04
41	GO:0005457: GDP-fucose transmembrane transporter activity	9.15E-04
42	GO:0019201: nucleotide kinase activity	1.31E-03
43	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.31E-03
44	GO:0004108: citrate (Si)-synthase activity	1.31E-03
45	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.31E-03
46	GO:0005460: UDP-glucose transmembrane transporter activity	1.31E-03
47	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.31E-03
48	GO:0017077: oxidative phosphorylation uncoupler activity	1.31E-03
49	GO:0017089: glycolipid transporter activity	1.31E-03
50	GO:0070628: proteasome binding	1.75E-03
51	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.75E-03
52	GO:0008022: protein C-terminus binding	1.75E-03
53	GO:0050302: indole-3-acetaldehyde oxidase activity	1.75E-03
54	GO:0004659: prenyltransferase activity	1.75E-03
55	GO:0051861: glycolipid binding	1.75E-03
56	GO:0005459: UDP-galactose transmembrane transporter activity	2.23E-03
57	GO:0031593: polyubiquitin binding	2.75E-03
58	GO:0031177: phosphopantetheine binding	2.75E-03
59	GO:0016208: AMP binding	2.75E-03
60	GO:0004866: endopeptidase inhibitor activity	2.75E-03
61	GO:0008200: ion channel inhibitor activity	2.75E-03
62	GO:0004017: adenylate kinase activity	3.30E-03
63	GO:0102391: decanoate--CoA ligase activity	3.30E-03
64	GO:0000035: acyl binding	3.30E-03
65	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.30E-03
66	GO:0005242: inward rectifier potassium channel activity	3.30E-03
67	GO:0016597: amino acid binding	3.75E-03
68	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.89E-03
69	GO:0004467: long-chain fatty acid-CoA ligase activity	3.89E-03
70	GO:0016831: carboxy-lyase activity	3.89E-03
71	GO:0051213: dioxygenase activity	3.97E-03
72	GO:0046872: metal ion binding	4.08E-03
73	GO:0030170: pyridoxal phosphate binding	4.16E-03
74	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	4.52E-03
75	GO:0000989: transcription factor activity, transcription factor binding	5.86E-03
76	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	5.86E-03
77	GO:0050897: cobalt ion binding	5.99E-03
78	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	6.56E-03
79	GO:0016844: strictosidine synthase activity	6.58E-03
80	GO:0015112: nitrate transmembrane transporter activity	6.58E-03
81	GO:0003729: mRNA binding	7.10E-03
82	GO:0004568: chitinase activity	7.33E-03
83	GO:0046961: proton-transporting ATPase activity, rotational mechanism	8.11E-03
84	GO:0008559: xenobiotic-transporting ATPase activity	8.11E-03
85	GO:0000287: magnesium ion binding	9.35E-03
86	GO:0015266: protein channel activity	9.75E-03
87	GO:0008266: poly(U) RNA binding	1.06E-02
88	GO:0004867: serine-type endopeptidase inhibitor activity	1.15E-02
89	GO:0008233: peptidase activity	1.23E-02
90	GO:0043130: ubiquitin binding	1.34E-02
91	GO:0008134: transcription factor binding	1.34E-02
92	GO:0016746: transferase activity, transferring acyl groups	1.68E-02
93	GO:0008810: cellulase activity	1.74E-02
94	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.75E-02
95	GO:0008514: organic anion transmembrane transporter activity	1.85E-02
96	GO:0019843: rRNA binding	2.05E-02
97	GO:0030551: cyclic nucleotide binding	2.07E-02
98	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.18E-02
99	GO:0005199: structural constituent of cell wall	2.18E-02
100	GO:0004252: serine-type endopeptidase activity	2.27E-02
101	GO:0005355: glucose transmembrane transporter activity	2.29E-02
102	GO:0004791: thioredoxin-disulfide reductase activity	2.29E-02
103	GO:0016853: isomerase activity	2.29E-02
104	GO:0005351: sugar:proton symporter activity	2.76E-02
105	GO:0003684: damaged DNA binding	2.90E-02
106	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.97E-02
107	GO:0015238: drug transmembrane transporter activity	4.12E-02
108	GO:0030145: manganese ion binding	4.41E-02
109	GO:0016788: hydrolase activity, acting on ester bonds	4.44E-02
110	GO:0003993: acid phosphatase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0005774: vacuolar membrane	1.83E-15
2	GO:0022626: cytosolic ribosome	1.68E-10
3	GO:0005840: ribosome	1.77E-10
4	GO:0022625: cytosolic large ribosomal subunit	3.09E-10
5	GO:0005618: cell wall	3.49E-09
6	GO:0005829: cytosol	3.20E-08
7	GO:0005741: mitochondrial outer membrane	7.51E-08
8	GO:0046930: pore complex	8.30E-08
9	GO:0005773: vacuole	1.92E-07
10	GO:0009506: plasmodesma	4.18E-06
11	GO:0005759: mitochondrial matrix	1.44E-05
12	GO:0016020: membrane	1.95E-05
13	GO:0000502: proteasome complex	2.33E-05
14	GO:0022627: cytosolic small ribosomal subunit	3.95E-05
15	GO:0005839: proteasome core complex	1.04E-04
16	GO:0045252: oxoglutarate dehydrogenase complex	2.55E-04
17	GO:0045239: tricarboxylic acid cycle enzyme complex	2.55E-04
18	GO:0005747: mitochondrial respiratory chain complex I	3.49E-04
19	GO:0000015: phosphopyruvate hydratase complex	5.64E-04
20	GO:0005886: plasma membrane	6.05E-04
21	GO:0005783: endoplasmic reticulum	7.51E-04
22	GO:0046861: glyoxysomal membrane	9.15E-04
23	GO:0005777: peroxisome	1.06E-03
24	GO:0045271: respiratory chain complex I	1.25E-03
25	GO:0070469: respiratory chain	1.25E-03
26	GO:0033180: proton-transporting V-type ATPase, V1 domain	1.31E-03
27	GO:0031966: mitochondrial membrane	1.60E-03
28	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.75E-03
29	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.75E-03
30	GO:0005737: cytoplasm	1.88E-03
31	GO:0005576: extracellular region	2.21E-03
32	GO:0005730: nucleolus	3.00E-03
33	GO:0009536: plastid	4.86E-03
34	GO:0009707: chloroplast outer membrane	5.18E-03
35	GO:0005742: mitochondrial outer membrane translocase complex	5.18E-03
36	GO:0009514: glyoxysome	5.18E-03
37	GO:0000325: plant-type vacuole	5.99E-03
38	GO:0005740: mitochondrial envelope	7.33E-03
39	GO:0009507: chloroplast	9.30E-03
40	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.15E-02
41	GO:0005739: mitochondrion	1.23E-02
42	GO:0005794: Golgi apparatus	1.32E-02
43	GO:0005758: mitochondrial intermembrane space	1.34E-02
44	GO:0015935: small ribosomal subunit	1.53E-02
45	GO:0071944: cell periphery	2.78E-02
46	GO:0048046: apoplast	3.87E-02
47	GO:0015934: large ribosomal subunit	4.41E-02
48	GO:0009505: plant-type cell wall	4.68E-02