co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G62360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006203: dGTP catabolic process	0.00E+00
2	GO:0051569: regulation of histone H3-K4 methylation	0.00E+00
3	GO:0071475: cellular hyperosmotic salinity response	0.00E+00
4	GO:0080021: response to benzoic acid	0.00E+00
5	GO:1905177: tracheary element differentiation	0.00E+00
6	GO:0010412: mannan metabolic process	0.00E+00
7	GO:0042631: cellular response to water deprivation	4.79E-06
8	GO:0009631: cold acclimation	4.44E-05
9	GO:0060627: regulation of vesicle-mediated transport	2.04E-04
10	GO:1902265: abscisic acid homeostasis	2.04E-04
11	GO:0097298: regulation of nucleus size	2.04E-04
12	GO:0080167: response to karrikin	3.23E-04
13	GO:0071422: succinate transmembrane transport	4.57E-04
14	GO:0006898: receptor-mediated endocytosis	4.57E-04
15	GO:0015786: UDP-glucose transport	4.57E-04
16	GO:0015709: thiosulfate transport	4.57E-04
17	GO:0016051: carbohydrate biosynthetic process	5.89E-04
18	GO:0006065: UDP-glucuronate biosynthetic process	7.44E-04
19	GO:0015783: GDP-fucose transport	7.44E-04
20	GO:0044210: 'de novo' CTP biosynthetic process	7.44E-04
21	GO:0016045: detection of bacterium	7.44E-04
22	GO:0009062: fatty acid catabolic process	7.44E-04
23	GO:0010359: regulation of anion channel activity	7.44E-04
24	GO:0010623: programmed cell death involved in cell development	7.44E-04
25	GO:0010371: regulation of gibberellin biosynthetic process	1.06E-03
26	GO:1901000: regulation of response to salt stress	1.06E-03
27	GO:0070301: cellular response to hydrogen peroxide	1.06E-03
28	GO:0015729: oxaloacetate transport	1.06E-03
29	GO:0072334: UDP-galactose transmembrane transport	1.06E-03
30	GO:0030100: regulation of endocytosis	1.06E-03
31	GO:0080024: indolebutyric acid metabolic process	1.06E-03
32	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.20E-03
33	GO:0001944: vasculature development	1.20E-03
34	GO:0070417: cellular response to cold	1.40E-03
35	GO:0009687: abscisic acid metabolic process	1.41E-03
36	GO:0046345: abscisic acid catabolic process	1.41E-03
37	GO:0015689: molybdate ion transport	1.41E-03
38	GO:0046355: mannan catabolic process	1.41E-03
39	GO:0022622: root system development	1.41E-03
40	GO:0010508: positive regulation of autophagy	1.41E-03
41	GO:0071585: detoxification of cadmium ion	1.41E-03
42	GO:0045489: pectin biosynthetic process	1.63E-03
43	GO:0006979: response to oxidative stress	1.73E-03
44	GO:0010200: response to chitin	1.77E-03
45	GO:0006461: protein complex assembly	1.80E-03
46	GO:0032957: inositol trisphosphate metabolic process	1.80E-03
47	GO:0071423: malate transmembrane transport	1.80E-03
48	GO:0009823: cytokinin catabolic process	1.80E-03
49	GO:0006656: phosphatidylcholine biosynthetic process	1.80E-03
50	GO:0009697: salicylic acid biosynthetic process	1.80E-03
51	GO:0006873: cellular ion homeostasis	1.80E-03
52	GO:0048497: maintenance of floral organ identity	1.80E-03
53	GO:0035435: phosphate ion transmembrane transport	2.21E-03
54	GO:0047484: regulation of response to osmotic stress	2.21E-03
55	GO:1900425: negative regulation of defense response to bacterium	2.21E-03
56	GO:0010337: regulation of salicylic acid metabolic process	2.21E-03
57	GO:0019760: glucosinolate metabolic process	2.43E-03
58	GO:0009828: plant-type cell wall loosening	2.43E-03
59	GO:0009058: biosynthetic process	2.59E-03
60	GO:0009955: adaxial/abaxial pattern specification	2.66E-03
61	GO:0071470: cellular response to osmotic stress	2.66E-03
62	GO:0010016: shoot system morphogenesis	2.66E-03
63	GO:0009409: response to cold	3.11E-03
64	GO:0032880: regulation of protein localization	3.13E-03
65	GO:0008272: sulfate transport	3.13E-03
66	GO:0010103: stomatal complex morphogenesis	3.13E-03
67	GO:0019827: stem cell population maintenance	3.63E-03
68	GO:0008610: lipid biosynthetic process	3.63E-03
69	GO:0035265: organ growth	3.63E-03
70	GO:0009819: drought recovery	3.63E-03
71	GO:0009690: cytokinin metabolic process	3.63E-03
72	GO:0009704: de-etiolation	3.63E-03
73	GO:0006997: nucleus organization	4.15E-03
74	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.21E-03
75	GO:0009873: ethylene-activated signaling pathway	4.48E-03
76	GO:0042761: very long-chain fatty acid biosynthetic process	5.27E-03
77	GO:0016571: histone methylation	5.27E-03
78	GO:0006631: fatty acid metabolic process	5.66E-03
79	GO:0006351: transcription, DNA-templated	5.72E-03
80	GO:0009641: shade avoidance	5.86E-03
81	GO:0006949: syncytium formation	5.86E-03
82	GO:0071555: cell wall organization	6.13E-03
83	GO:0008283: cell proliferation	6.13E-03
84	GO:0052544: defense response by callose deposition in cell wall	6.48E-03
85	GO:0030154: cell differentiation	7.11E-03
86	GO:0045037: protein import into chloroplast stroma	7.12E-03
87	GO:0006355: regulation of transcription, DNA-templated	7.56E-03
88	GO:0042538: hyperosmotic salinity response	7.70E-03
89	GO:0009664: plant-type cell wall organization	7.70E-03
90	GO:2000012: regulation of auxin polar transport	7.78E-03
91	GO:0050826: response to freezing	7.78E-03
92	GO:0010167: response to nitrate	9.17E-03
93	GO:0010030: positive regulation of seed germination	9.17E-03
94	GO:0010025: wax biosynthetic process	9.90E-03
95	GO:0009833: plant-type primary cell wall biogenesis	9.90E-03
96	GO:0030150: protein import into mitochondrial matrix	1.06E-02
97	GO:0006289: nucleotide-excision repair	1.06E-02
98	GO:0007017: microtubule-based process	1.14E-02
99	GO:0009624: response to nematode	1.18E-02
100	GO:0071215: cellular response to abscisic acid stimulus	1.38E-02
101	GO:0010089: xylem development	1.47E-02
102	GO:0006284: base-excision repair	1.47E-02
103	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.55E-02
104	GO:0008284: positive regulation of cell proliferation	1.55E-02
105	GO:0010268: brassinosteroid homeostasis	1.73E-02
106	GO:0009958: positive gravitropism	1.73E-02
107	GO:0009749: response to glucose	1.92E-02
108	GO:0016132: brassinosteroid biosynthetic process	2.01E-02
109	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.01E-02
110	GO:0000302: response to reactive oxygen species	2.01E-02
111	GO:0006635: fatty acid beta-oxidation	2.01E-02
112	GO:0009414: response to water deprivation	2.03E-02
113	GO:0045490: pectin catabolic process	2.05E-02
114	GO:0010583: response to cyclopentenone	2.11E-02
115	GO:1901657: glycosyl compound metabolic process	2.21E-02
116	GO:0009737: response to abscisic acid	2.26E-02
117	GO:0009739: response to gibberellin	2.29E-02
118	GO:0016125: sterol metabolic process	2.30E-02
119	GO:0009639: response to red or far red light	2.30E-02
120	GO:0006310: DNA recombination	2.30E-02
121	GO:0009911: positive regulation of flower development	2.61E-02
122	GO:0010029: regulation of seed germination	2.72E-02
123	GO:0009627: systemic acquired resistance	2.83E-02
124	GO:0006974: cellular response to DNA damage stimulus	2.83E-02
125	GO:0015031: protein transport	3.00E-02
126	GO:0009826: unidimensional cell growth	3.05E-02
127	GO:0016049: cell growth	3.05E-02
128	GO:0000160: phosphorelay signal transduction system	3.27E-02
129	GO:0006811: ion transport	3.38E-02
130	GO:0007568: aging	3.50E-02
131	GO:0009910: negative regulation of flower development	3.50E-02
132	GO:0048527: lateral root development	3.50E-02
133	GO:0009637: response to blue light	3.74E-02
134	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.05E-02
135	GO:0006839: mitochondrial transport	4.10E-02
136	GO:0006897: endocytosis	4.22E-02
137	GO:0009744: response to sucrose	4.47E-02
138	GO:0009640: photomorphogenesis	4.47E-02
139	GO:0010114: response to red light	4.47E-02
140	GO:0042546: cell wall biogenesis	4.60E-02
141	GO:0009644: response to high light intensity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0008413: 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity	0.00E+00
2	GO:0019177: dihydroneopterin triphosphate pyrophosphohydrolase activity	0.00E+00
3	GO:0035539: 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity	0.00E+00
4	GO:0003883: CTP synthase activity	1.66E-05
5	GO:0008809: carnitine racemase activity	2.04E-04
6	GO:0004105: choline-phosphate cytidylyltransferase activity	2.04E-04
7	GO:0005534: galactose binding	2.04E-04
8	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	2.04E-04
9	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	2.04E-04
10	GO:0047216: inositol 3-alpha-galactosyltransferase activity	4.57E-04
11	GO:0015117: thiosulfate transmembrane transporter activity	4.57E-04
12	GO:0048531: beta-1,3-galactosyltransferase activity	4.57E-04
13	GO:1901677: phosphate transmembrane transporter activity	4.57E-04
14	GO:0008083: growth factor activity	6.10E-04
15	GO:0005457: GDP-fucose transmembrane transporter activity	7.44E-04
16	GO:0003979: UDP-glucose 6-dehydrogenase activity	7.44E-04
17	GO:0047325: inositol tetrakisphosphate 1-kinase activity	7.44E-04
18	GO:0005310: dicarboxylic acid transmembrane transporter activity	7.44E-04
19	GO:0015141: succinate transmembrane transporter activity	7.44E-04
20	GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity	7.44E-04
21	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	7.44E-04
22	GO:0017108: 5'-flap endonuclease activity	7.44E-04
23	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	1.06E-03
24	GO:0015131: oxaloacetate transmembrane transporter activity	1.06E-03
25	GO:0005460: UDP-glucose transmembrane transporter activity	1.06E-03
26	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.06E-03
27	GO:0016985: mannan endo-1,4-beta-mannosidase activity	1.41E-03
28	GO:0019104: DNA N-glycosylase activity	1.41E-03
29	GO:0015098: molybdate ion transmembrane transporter activity	1.41E-03
30	GO:0000993: RNA polymerase II core binding	1.41E-03
31	GO:0010294: abscisic acid glucosyltransferase activity	1.80E-03
32	GO:0005459: UDP-galactose transmembrane transporter activity	1.80E-03
33	GO:0019139: cytokinin dehydrogenase activity	1.80E-03
34	GO:0000210: NAD+ diphosphatase activity	2.21E-03
35	GO:0043565: sequence-specific DNA binding	2.25E-03
36	GO:0016757: transferase activity, transferring glycosyl groups	2.33E-03
37	GO:0016758: transferase activity, transferring hexosyl groups	2.34E-03
38	GO:0003924: GTPase activity	3.04E-03
39	GO:0015140: malate transmembrane transporter activity	3.13E-03
40	GO:0004620: phospholipase activity	3.13E-03
41	GO:0015288: porin activity	3.63E-03
42	GO:0016209: antioxidant activity	3.63E-03
43	GO:0008308: voltage-gated anion channel activity	4.15E-03
44	GO:0003700: transcription factor activity, sequence-specific DNA binding	5.20E-03
45	GO:0015020: glucuronosyltransferase activity	5.86E-03
46	GO:0044212: transcription regulatory region DNA binding	6.13E-03
47	GO:0005543: phospholipid binding	6.48E-03
48	GO:0015116: sulfate transmembrane transporter activity	7.12E-03
49	GO:0015266: protein channel activity	7.78E-03
50	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.47E-03
51	GO:0061630: ubiquitin protein ligase activity	8.91E-03
52	GO:0043130: ubiquitin binding	1.06E-02
53	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.08E-02
54	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.08E-02
55	GO:0035251: UDP-glucosyltransferase activity	1.22E-02
56	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.30E-02
57	GO:0030570: pectate lyase activity	1.38E-02
58	GO:0005525: GTP binding	1.54E-02
59	GO:0001085: RNA polymerase II transcription factor binding	1.73E-02
60	GO:0003713: transcription coactivator activity	1.73E-02
61	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.91E-02
62	GO:0046910: pectinesterase inhibitor activity	1.91E-02
63	GO:0015297: antiporter activity	1.95E-02
64	GO:0004518: nuclease activity	2.11E-02
65	GO:0000156: phosphorelay response regulator activity	2.21E-02
66	GO:0008194: UDP-glycosyltransferase activity	2.29E-02
67	GO:0016759: cellulose synthase activity	2.30E-02
68	GO:0003684: damaged DNA binding	2.30E-02
69	GO:0005200: structural constituent of cytoskeleton	2.41E-02
70	GO:0008375: acetylglucosaminyltransferase activity	2.83E-02
71	GO:0102483: scopolin beta-glucosidase activity	2.94E-02
72	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.16E-02
73	GO:0016788: hydrolase activity, acting on ester bonds	3.23E-02
74	GO:0004222: metalloendopeptidase activity	3.38E-02
75	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.50E-02
76	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.50E-02
77	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.74E-02
78	GO:0003993: acid phosphatase activity	3.86E-02
79	GO:0008422: beta-glucosidase activity	3.98E-02
80	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.98E-02
81	GO:0052689: carboxylic ester hydrolase activity	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0033557: Slx1-Slx4 complex	0.00E+00
2	GO:0034426: etioplast membrane	0.00E+00
3	GO:0031357: integral component of chloroplast inner membrane	1.97E-06
4	GO:0005652: nuclear lamina	7.44E-04
5	GO:0009527: plastid outer membrane	1.41E-03
6	GO:0016593: Cdc73/Paf1 complex	1.41E-03
7	GO:0005798: Golgi-associated vesicle	2.21E-03
8	GO:0005618: cell wall	3.35E-03
9	GO:0034399: nuclear periphery	3.63E-03
10	GO:0031305: integral component of mitochondrial inner membrane	3.63E-03
11	GO:0046930: pore complex	4.15E-03
12	GO:0045298: tubulin complex	4.70E-03
13	GO:0031012: extracellular matrix	7.78E-03
14	GO:0005769: early endosome	9.90E-03
15	GO:0016607: nuclear speck	1.01E-02
16	GO:0000139: Golgi membrane	1.04E-02
17	GO:0005905: clathrin-coated pit	1.22E-02
18	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.47E-02
19	GO:0030136: clathrin-coated vesicle	1.55E-02
20	GO:0005622: intracellular	1.73E-02
21	GO:0005768: endosome	1.80E-02
22	GO:0031965: nuclear membrane	1.92E-02
23	GO:0005615: extracellular space	2.29E-02
24	GO:0005794: Golgi apparatus	2.36E-02
25	GO:0046658: anchored component of plasma membrane	2.71E-02
26	GO:0005667: transcription factor complex	2.83E-02
27	GO:0009707: chloroplast outer membrane	3.16E-02
28	GO:0031225: anchored component of membrane	4.88E-02