co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G62350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:1905177: tracheary element differentiation	0.00E+00
3	GO:0010412: mannan metabolic process	0.00E+00
4	GO:0010025: wax biosynthetic process	3.79E-07
5	GO:0009409: response to cold	1.21E-05
6	GO:0009631: cold acclimation	2.04E-05
7	GO:0009913: epidermal cell differentiation	4.59E-05
8	GO:0008610: lipid biosynthetic process	1.11E-04
9	GO:0042761: very long-chain fatty acid biosynthetic process	2.04E-04
10	GO:0000038: very long-chain fatty acid metabolic process	2.81E-04
11	GO:0045490: pectin catabolic process	3.40E-04
12	GO:0015709: thiosulfate transport	3.51E-04
13	GO:0071422: succinate transmembrane transport	3.51E-04
14	GO:0044210: 'de novo' CTP biosynthetic process	5.75E-04
15	GO:0009062: fatty acid catabolic process	5.75E-04
16	GO:0010623: programmed cell death involved in cell development	5.75E-04
17	GO:0006979: response to oxidative stress	7.89E-04
18	GO:0030100: regulation of endocytosis	8.23E-04
19	GO:1901000: regulation of response to salt stress	8.23E-04
20	GO:0015729: oxaloacetate transport	8.23E-04
21	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.23E-04
22	GO:0080167: response to karrikin	9.23E-04
23	GO:0070417: cellular response to cold	9.61E-04
24	GO:0042335: cuticle development	1.04E-03
25	GO:0042631: cellular response to water deprivation	1.04E-03
26	GO:0042545: cell wall modification	1.07E-03
27	GO:0022622: root system development	1.09E-03
28	GO:0010508: positive regulation of autophagy	1.09E-03
29	GO:0071585: detoxification of cadmium ion	1.09E-03
30	GO:2000122: negative regulation of stomatal complex development	1.09E-03
31	GO:0010037: response to carbon dioxide	1.09E-03
32	GO:0015976: carbon utilization	1.09E-03
33	GO:0046345: abscisic acid catabolic process	1.09E-03
34	GO:0015689: molybdate ion transport	1.09E-03
35	GO:0046355: mannan catabolic process	1.09E-03
36	GO:0071423: malate transmembrane transport	1.38E-03
37	GO:0009823: cytokinin catabolic process	1.38E-03
38	GO:0006656: phosphatidylcholine biosynthetic process	1.38E-03
39	GO:0006461: protein complex assembly	1.38E-03
40	GO:0009828: plant-type cell wall loosening	1.64E-03
41	GO:0035435: phosphate ion transmembrane transport	1.70E-03
42	GO:0047484: regulation of response to osmotic stress	1.70E-03
43	GO:1900425: negative regulation of defense response to bacterium	1.70E-03
44	GO:0006633: fatty acid biosynthetic process	1.96E-03
45	GO:0009955: adaxial/abaxial pattern specification	2.03E-03
46	GO:0071470: cellular response to osmotic stress	2.03E-03
47	GO:0008272: sulfate transport	2.39E-03
48	GO:0050829: defense response to Gram-negative bacterium	2.39E-03
49	GO:0010103: stomatal complex morphogenesis	2.39E-03
50	GO:0032880: regulation of protein localization	2.39E-03
51	GO:0009610: response to symbiotic fungus	2.39E-03
52	GO:0030497: fatty acid elongation	2.39E-03
53	GO:0019827: stem cell population maintenance	2.77E-03
54	GO:0035265: organ growth	2.77E-03
55	GO:0042255: ribosome assembly	2.77E-03
56	GO:0006353: DNA-templated transcription, termination	2.77E-03
57	GO:0030091: protein repair	2.77E-03
58	GO:0009690: cytokinin metabolic process	2.77E-03
59	GO:0009704: de-etiolation	2.77E-03
60	GO:0016051: carbohydrate biosynthetic process	3.21E-03
61	GO:0009737: response to abscisic acid	3.44E-03
62	GO:0006949: syncytium formation	4.46E-03
63	GO:0009664: plant-type cell wall organization	5.18E-03
64	GO:0016024: CDP-diacylglycerol biosynthetic process	5.41E-03
65	GO:0045037: protein import into chloroplast stroma	5.41E-03
66	GO:2000012: regulation of auxin polar transport	5.91E-03
67	GO:0010102: lateral root morphogenesis	5.91E-03
68	GO:0010143: cutin biosynthetic process	6.42E-03
69	GO:0030150: protein import into mitochondrial matrix	8.05E-03
70	GO:0006289: nucleotide-excision repair	8.05E-03
71	GO:0007017: microtubule-based process	8.63E-03
72	GO:0009058: biosynthetic process	1.05E-02
73	GO:0006284: base-excision repair	1.11E-02
74	GO:0010089: xylem development	1.11E-02
75	GO:0008284: positive regulation of cell proliferation	1.17E-02
76	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.17E-02
77	GO:0009958: positive gravitropism	1.31E-02
78	GO:0030154: cell differentiation	1.31E-02
79	GO:0010268: brassinosteroid homeostasis	1.31E-02
80	GO:0048825: cotyledon development	1.44E-02
81	GO:0009749: response to glucose	1.44E-02
82	GO:0006635: fatty acid beta-oxidation	1.52E-02
83	GO:0016132: brassinosteroid biosynthetic process	1.52E-02
84	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.54E-02
85	GO:0009739: response to gibberellin	1.54E-02
86	GO:0010583: response to cyclopentenone	1.59E-02
87	GO:0032502: developmental process	1.59E-02
88	GO:0015031: protein transport	1.66E-02
89	GO:0009416: response to light stimulus	1.71E-02
90	GO:0019760: glucosinolate metabolic process	1.74E-02
91	GO:0009639: response to red or far red light	1.74E-02
92	GO:0006310: DNA recombination	1.74E-02
93	GO:0016125: sterol metabolic process	1.74E-02
94	GO:0009826: unidimensional cell growth	2.05E-02
95	GO:0009817: defense response to fungus, incompatible interaction	2.38E-02
96	GO:0000160: phosphorelay signal transduction system	2.46E-02
97	GO:0048527: lateral root development	2.64E-02
98	GO:0010119: regulation of stomatal movement	2.64E-02
99	GO:0007568: aging	2.64E-02
100	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.73E-02
101	GO:0006839: mitochondrial transport	3.09E-02
102	GO:0006631: fatty acid metabolic process	3.18E-02
103	GO:0009640: photomorphogenesis	3.37E-02
104	GO:0008283: cell proliferation	3.37E-02
105	GO:0010114: response to red light	3.37E-02
106	GO:0009744: response to sucrose	3.37E-02
107	GO:0016042: lipid catabolic process	3.78E-02
108	GO:0006281: DNA repair	3.89E-02
109	GO:0042538: hyperosmotic salinity response	3.96E-02
110	GO:0009414: response to water deprivation	4.00E-02
111	GO:0071555: cell wall organization	4.12E-02
112	GO:0009585: red, far-red light phototransduction	4.17E-02
113	GO:0009736: cytokinin-activated signaling pathway	4.17E-02
114	GO:0016310: phosphorylation	4.35E-02
115	GO:0006857: oligopeptide transport	4.37E-02
116	GO:0043086: negative regulation of catalytic activity	4.69E-02
117	GO:0009733: response to auxin	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0003883: CTP synthase activity	1.01E-05
3	GO:0005534: galactose binding	1.54E-04
4	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	1.54E-04
5	GO:0008809: carnitine racemase activity	1.54E-04
6	GO:0004105: choline-phosphate cytidylyltransferase activity	1.54E-04
7	GO:0015117: thiosulfate transmembrane transporter activity	3.51E-04
8	GO:1901677: phosphate transmembrane transporter activity	3.51E-04
9	GO:0047216: inositol 3-alpha-galactosyltransferase activity	3.51E-04
10	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.15E-04
11	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	5.19E-04
12	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	5.19E-04
13	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	5.19E-04
14	GO:0005310: dicarboxylic acid transmembrane transporter activity	5.75E-04
15	GO:0015141: succinate transmembrane transporter activity	5.75E-04
16	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	5.75E-04
17	GO:0017108: 5'-flap endonuclease activity	5.75E-04
18	GO:0045330: aspartyl esterase activity	8.14E-04
19	GO:0015131: oxaloacetate transmembrane transporter activity	8.23E-04
20	GO:0004165: dodecenoyl-CoA delta-isomerase activity	8.23E-04
21	GO:0030599: pectinesterase activity	1.03E-03
22	GO:0015098: molybdate ion transmembrane transporter activity	1.09E-03
23	GO:0016985: mannan endo-1,4-beta-mannosidase activity	1.09E-03
24	GO:0019104: DNA N-glycosylase activity	1.09E-03
25	GO:0016746: transferase activity, transferring acyl groups	1.15E-03
26	GO:0019139: cytokinin dehydrogenase activity	1.38E-03
27	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.38E-03
28	GO:0009922: fatty acid elongase activity	1.38E-03
29	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.70E-03
30	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.70E-03
31	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.03E-03
32	GO:0043565: sequence-specific DNA binding	2.34E-03
33	GO:0015140: malate transmembrane transporter activity	2.39E-03
34	GO:0004620: phospholipase activity	2.39E-03
35	GO:0015288: porin activity	2.77E-03
36	GO:0016209: antioxidant activity	2.77E-03
37	GO:0015020: glucuronosyltransferase activity	4.46E-03
38	GO:0015116: sulfate transmembrane transporter activity	5.41E-03
39	GO:0003690: double-stranded DNA binding	5.75E-03
40	GO:0015266: protein channel activity	5.91E-03
41	GO:0004022: alcohol dehydrogenase (NAD) activity	5.91E-03
42	GO:0004089: carbonate dehydratase activity	5.91E-03
43	GO:0008083: growth factor activity	6.42E-03
44	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	6.78E-03
45	GO:0003924: GTPase activity	8.26E-03
46	GO:0030570: pectate lyase activity	1.04E-02
47	GO:0003727: single-stranded RNA binding	1.11E-02
48	GO:0044212: transcription regulatory region DNA binding	1.15E-02
49	GO:0046910: pectinesterase inhibitor activity	1.28E-02
50	GO:0003713: transcription coactivator activity	1.31E-02
51	GO:0004518: nuclease activity	1.59E-02
52	GO:0000156: phosphorelay response regulator activity	1.66E-02
53	GO:0003684: damaged DNA binding	1.74E-02
54	GO:0016791: phosphatase activity	1.74E-02
55	GO:0005200: structural constituent of cytoskeleton	1.81E-02
56	GO:0008375: acetylglucosaminyltransferase activity	2.13E-02
57	GO:0016788: hydrolase activity, acting on ester bonds	2.17E-02
58	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.38E-02
59	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.43E-02
60	GO:0004222: metalloendopeptidase activity	2.55E-02
61	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.64E-02
62	GO:0061630: ubiquitin protein ligase activity	2.77E-02
63	GO:0003993: acid phosphatase activity	2.90E-02
64	GO:0052689: carboxylic ester hydrolase activity	2.91E-02
65	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	3.16E-02
66	GO:0005525: GTP binding	3.19E-02
67	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	3.51E-02
68	GO:0005198: structural molecule activity	3.66E-02
69	GO:0015171: amino acid transmembrane transporter activity	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0033557: Slx1-Slx4 complex	0.00E+00
2	GO:0034426: etioplast membrane	0.00E+00
3	GO:0031357: integral component of chloroplast inner membrane	1.16E-06
4	GO:0009505: plant-type cell wall	6.10E-05
5	GO:0005618: cell wall	4.02E-04
6	GO:0009527: plastid outer membrane	1.09E-03
7	GO:0005798: Golgi-associated vesicle	1.70E-03
8	GO:0005886: plasma membrane	1.88E-03
9	GO:0031305: integral component of mitochondrial inner membrane	2.77E-03
10	GO:0046930: pore complex	3.16E-03
11	GO:0045298: tubulin complex	3.58E-03
12	GO:0009508: plastid chromosome	5.91E-03
13	GO:0031012: extracellular matrix	5.91E-03
14	GO:0005769: early endosome	7.49E-03
15	GO:0016020: membrane	9.03E-03
16	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.11E-02
17	GO:0005615: extracellular space	1.54E-02
18	GO:0009941: chloroplast envelope	1.61E-02
19	GO:0071944: cell periphery	1.66E-02
20	GO:0009295: nucleoid	1.81E-02
21	GO:0010319: stromule	1.81E-02
22	GO:0046658: anchored component of plasma membrane	1.82E-02
23	GO:0005773: vacuole	2.02E-02
24	GO:0009506: plasmodesma	2.13E-02
25	GO:0005576: extracellular region	2.33E-02
26	GO:0009707: chloroplast outer membrane	2.38E-02
27	GO:0031225: anchored component of membrane	2.99E-02
28	GO:0009535: chloroplast thylakoid membrane	3.81E-02
29	GO:0016607: nuclear speck	4.80E-02