co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G62270

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071731: response to nitric oxide	0.00E+00
2	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
3	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
4	GO:0051050: positive regulation of transport	0.00E+00
5	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
6	GO:0031591: wybutosine biosynthetic process	0.00E+00
7	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
8	GO:0006364: rRNA processing	1.76E-17
9	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.24E-12
10	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.96E-07
11	GO:0010501: RNA secondary structure unwinding	2.54E-05
12	GO:0009553: embryo sac development	3.99E-05
13	GO:0000028: ribosomal small subunit assembly	5.40E-05
14	GO:0043985: histone H4-R3 methylation	9.69E-05
15	GO:0031120: snRNA pseudouridine synthesis	9.69E-05
16	GO:0000469: cleavage involved in rRNA processing	9.69E-05
17	GO:0031118: rRNA pseudouridine synthesis	9.69E-05
18	GO:0030490: maturation of SSU-rRNA	9.69E-05
19	GO:0080009: mRNA methylation	2.28E-04
20	GO:0045041: protein import into mitochondrial intermembrane space	2.28E-04
21	GO:0034470: ncRNA processing	2.28E-04
22	GO:0045604: regulation of epidermal cell differentiation	3.80E-04
23	GO:0007005: mitochondrion organization	4.10E-04
24	GO:0007276: gamete generation	5.46E-04
25	GO:0051131: chaperone-mediated protein complex assembly	5.46E-04
26	GO:0042273: ribosomal large subunit biogenesis	7.26E-04
27	GO:0000460: maturation of 5.8S rRNA	7.26E-04
28	GO:0006479: protein methylation	7.26E-04
29	GO:1900864: mitochondrial RNA modification	7.26E-04
30	GO:0046345: abscisic acid catabolic process	7.26E-04
31	GO:0009451: RNA modification	1.02E-03
32	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.12E-03
33	GO:0000741: karyogamy	1.12E-03
34	GO:0000470: maturation of LSU-rRNA	1.12E-03
35	GO:0042026: protein refolding	1.34E-03
36	GO:0006458: 'de novo' protein folding	1.34E-03
37	GO:0030488: tRNA methylation	1.34E-03
38	GO:0048444: floral organ morphogenesis	1.34E-03
39	GO:0010077: maintenance of inflorescence meristem identity	1.34E-03
40	GO:0006400: tRNA modification	1.57E-03
41	GO:0045995: regulation of embryonic development	1.57E-03
42	GO:0042254: ribosome biogenesis	1.75E-03
43	GO:0042255: ribosome assembly	1.81E-03
44	GO:0009880: embryonic pattern specification	2.07E-03
45	GO:0006261: DNA-dependent DNA replication	2.07E-03
46	GO:0006457: protein folding	2.22E-03
47	GO:2000024: regulation of leaf development	2.33E-03
48	GO:1900865: chloroplast RNA modification	2.61E-03
49	GO:0010162: seed dormancy process	2.90E-03
50	GO:0032259: methylation	3.48E-03
51	GO:0010582: floral meristem determinacy	3.50E-03
52	GO:0010030: positive regulation of seed germination	4.49E-03
53	GO:0009944: polarity specification of adaxial/abaxial axis	5.19E-03
54	GO:0051302: regulation of cell division	5.55E-03
55	GO:0061077: chaperone-mediated protein folding	5.93E-03
56	GO:0009294: DNA mediated transformation	6.70E-03
57	GO:0009561: megagametogenesis	7.10E-03
58	GO:0000413: protein peptidyl-prolyl isomerization	7.93E-03
59	GO:0010197: polar nucleus fusion	8.35E-03
60	GO:0046686: response to cadmium ion	8.57E-03
61	GO:0048825: cotyledon development	9.23E-03
62	GO:0016049: cell growth	1.46E-02
63	GO:0048527: lateral root development	1.68E-02
64	GO:0000154: rRNA modification	2.33E-02
65	GO:0006417: regulation of translation	2.85E-02
66	GO:0016569: covalent chromatin modification	3.26E-02
67	GO:0006396: RNA processing	3.48E-02
68	GO:0009555: pollen development	3.65E-02
69	GO:0000398: mRNA splicing, via spliceosome	3.77E-02
70	GO:0051301: cell division	3.98E-02
71	GO:0009790: embryo development	4.46E-02

Rank	GO Term	Adjusted P value
1	GO:0102522: tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity	0.00E+00
2	GO:0050355: triphosphatase activity	0.00E+00
3	GO:0016018: cyclosporin A binding	0.00E+00
4	GO:0034062: 5'-3' RNA polymerase activity	0.00E+00
5	GO:0003723: RNA binding	7.70E-13
6	GO:0000166: nucleotide binding	1.01E-12
7	GO:0030515: snoRNA binding	1.21E-09
8	GO:0043021: ribonucleoprotein complex binding	4.96E-07
9	GO:0070181: small ribosomal subunit rRNA binding	1.89E-06
10	GO:0008026: ATP-dependent helicase activity	2.25E-06
11	GO:0004004: ATP-dependent RNA helicase activity	3.18E-06
12	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	9.69E-05
13	GO:0042134: rRNA primary transcript binding	9.69E-05
14	GO:0044183: protein binding involved in protein folding	1.44E-04
15	GO:0008168: methyltransferase activity	2.31E-04
16	GO:0048027: mRNA 5'-UTR binding	5.46E-04
17	GO:0004519: endonuclease activity	7.22E-04
18	GO:0005524: ATP binding	8.75E-04
19	GO:0003689: DNA clamp loader activity	9.17E-04
20	GO:0003746: translation elongation factor activity	1.72E-03
21	GO:0008173: RNA methyltransferase activity	2.07E-03
22	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.96E-03
23	GO:0001054: RNA polymerase I activity	3.20E-03
24	GO:0004521: endoribonuclease activity	3.50E-03
25	GO:0001056: RNA polymerase III activity	3.50E-03
26	GO:0009982: pseudouridine synthase activity	3.82E-03
27	GO:0051082: unfolded protein binding	4.20E-03
28	GO:0004407: histone deacetylase activity	5.19E-03
29	GO:0016887: ATPase activity	6.41E-03
30	GO:0003729: mRNA binding	8.00E-03
31	GO:0004527: exonuclease activity	8.35E-03
32	GO:0003676: nucleic acid binding	1.17E-02
33	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.46E-02
34	GO:0050897: cobalt ion binding	1.68E-02
35	GO:0000987: core promoter proximal region sequence-specific DNA binding	1.85E-02
36	GO:0003924: GTPase activity	2.06E-02
37	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.39E-02
38	GO:0019843: rRNA binding	4.00E-02
39	GO:0003735: structural constituent of ribosome	4.38E-02
40	GO:0016787: hydrolase activity	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0034457: Mpp10 complex	0.00E+00
2	GO:0034455: t-UTP complex	0.00E+00
3	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	0.00E+00
4	GO:0036396: MIS complex	0.00E+00
5	GO:0005730: nucleolus	5.20E-23
6	GO:0032040: small-subunit processome	2.99E-15
7	GO:0005634: nucleus	1.60E-08
8	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	7.56E-08
9	GO:0030687: preribosome, large subunit precursor	3.12E-07
10	GO:0070545: PeBoW complex	4.96E-07
11	GO:0030688: preribosome, small subunit precursor	9.69E-05
12	GO:0005834: heterotrimeric G-protein complex	4.32E-04
13	GO:0031429: box H/ACA snoRNP complex	5.46E-04
14	GO:0005663: DNA replication factor C complex	7.26E-04
15	GO:0005618: cell wall	9.50E-04
16	GO:0031428: box C/D snoRNP complex	1.12E-03
17	GO:0016363: nuclear matrix	1.34E-03
18	GO:0034399: nuclear periphery	1.81E-03
19	GO:0005763: mitochondrial small ribosomal subunit	2.33E-03
20	GO:0005736: DNA-directed RNA polymerase I complex	2.33E-03
21	GO:0005666: DNA-directed RNA polymerase III complex	2.61E-03
22	GO:0015030: Cajal body	2.61E-03
23	GO:0005747: mitochondrial respiratory chain complex I	3.61E-03
24	GO:0019013: viral nucleocapsid	3.82E-03
25	GO:0005654: nucleoplasm	5.11E-03
26	GO:0042651: thylakoid membrane	5.55E-03
27	GO:0005759: mitochondrial matrix	6.59E-03
28	GO:0019898: extrinsic component of membrane	9.23E-03
29	GO:0022627: cytosolic small ribosomal subunit	9.59E-03
30	GO:0030529: intracellular ribonucleoprotein complex	1.25E-02
31	GO:0005774: vacuolar membrane	2.83E-02
32	GO:0005681: spliceosomal complex	2.99E-02
33	GO:0016607: nuclear speck	3.05E-02
34	GO:0005829: cytosol	3.21E-02
35	GO:0005732: small nucleolar ribonucleoprotein complex	3.62E-02
36	GO:0009543: chloroplast thylakoid lumen	4.00E-02