Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G61670

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0098586: cellular response to virus0.00E+00
2GO:0042304: regulation of fatty acid biosynthetic process0.00E+00
3GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
4GO:0090470: shoot organ boundary specification0.00E+00
5GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
6GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine0.00E+00
7GO:0017009: protein-phycocyanobilin linkage0.00E+00
8GO:0032928: regulation of superoxide anion generation0.00E+00
9GO:1900088: regulation of inositol biosynthetic process0.00E+00
10GO:0010477: response to sulfur dioxide0.00E+00
11GO:1900091: regulation of raffinose biosynthetic process0.00E+00
12GO:2000013: regulation of arginine biosynthetic process via ornithine0.00E+00
13GO:0032780: negative regulation of ATPase activity0.00E+00
14GO:0080005: photosystem stoichiometry adjustment5.37E-06
15GO:0006013: mannose metabolic process1.89E-05
16GO:0015995: chlorophyll biosynthetic process1.14E-04
17GO:0010117: photoprotection1.16E-04
18GO:0016120: carotene biosynthetic process1.16E-04
19GO:0010190: cytochrome b6f complex assembly1.68E-04
20GO:0016117: carotenoid biosynthetic process3.13E-04
21GO:0010362: negative regulation of anion channel activity by blue light3.44E-04
22GO:0006285: base-excision repair, AP site formation3.44E-04
23GO:0019343: cysteine biosynthetic process via cystathionine3.44E-04
24GO:0019646: aerobic electron transport chain3.44E-04
25GO:0071266: 'de novo' L-methionine biosynthetic process3.44E-04
26GO:0031426: polycistronic mRNA processing3.44E-04
27GO:0019346: transsulfuration3.44E-04
28GO:0015798: myo-inositol transport3.44E-04
29GO:0071461: cellular response to redox state3.44E-04
30GO:0032956: regulation of actin cytoskeleton organization3.44E-04
31GO:0048438: floral whorl development3.44E-04
32GO:0006430: lysyl-tRNA aminoacylation3.44E-04
33GO:0080065: 4-alpha-methyl-delta7-sterol oxidation3.44E-04
34GO:0055114: oxidation-reduction process4.03E-04
35GO:0071482: cellular response to light stimulus4.56E-04
36GO:0090305: nucleic acid phosphodiester bond hydrolysis5.47E-04
37GO:0046741: transport of virus in host, tissue to tissue7.51E-04
38GO:0048314: embryo sac morphogenesis7.51E-04
39GO:2000030: regulation of response to red or far red light7.51E-04
40GO:0000256: allantoin catabolic process7.51E-04
41GO:0006898: receptor-mediated endocytosis7.51E-04
42GO:0010220: positive regulation of vernalization response7.51E-04
43GO:0034755: iron ion transmembrane transport7.51E-04
44GO:0048571: long-day photoperiodism7.51E-04
45GO:0080183: response to photooxidative stress7.51E-04
46GO:0043100: pyrimidine nucleobase salvage7.51E-04
47GO:0016122: xanthophyll metabolic process7.51E-04
48GO:0080185: effector dependent induction by symbiont of host immune response7.51E-04
49GO:0000103: sulfate assimilation7.52E-04
50GO:0009658: chloroplast organization8.64E-04
51GO:0006879: cellular iron ion homeostasis8.68E-04
52GO:0006790: sulfur compound metabolic process9.90E-04
53GO:0005986: sucrose biosynthetic process1.12E-03
54GO:0018298: protein-chromophore linkage1.13E-03
55GO:0019419: sulfate reduction1.21E-03
56GO:0044210: 'de novo' CTP biosynthetic process1.21E-03
57GO:0010136: ureide catabolic process1.21E-03
58GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion1.21E-03
59GO:1901562: response to paraquat1.21E-03
60GO:0008652: cellular amino acid biosynthetic process1.21E-03
61GO:0009150: purine ribonucleotide metabolic process1.21E-03
62GO:0031929: TOR signaling1.21E-03
63GO:0006696: ergosterol biosynthetic process1.21E-03
64GO:0071836: nectar secretion1.21E-03
65GO:0006508: proteolysis1.69E-03
66GO:0019344: cysteine biosynthetic process1.74E-03
67GO:0010239: chloroplast mRNA processing1.75E-03
68GO:0009647: skotomorphogenesis1.75E-03
69GO:0006145: purine nucleobase catabolic process1.75E-03
70GO:0009963: positive regulation of flavonoid biosynthetic process1.75E-03
71GO:0050482: arachidonic acid secretion1.75E-03
72GO:0043572: plastid fission1.75E-03
73GO:2001141: regulation of RNA biosynthetic process1.75E-03
74GO:0009067: aspartate family amino acid biosynthetic process1.75E-03
75GO:0010371: regulation of gibberellin biosynthetic process1.75E-03
76GO:0071484: cellular response to light intensity1.75E-03
77GO:0016226: iron-sulfur cluster assembly2.31E-03
78GO:0071585: detoxification of cadmium ion2.35E-03
79GO:0015994: chlorophyll metabolic process2.35E-03
80GO:0006552: leucine catabolic process2.35E-03
81GO:0009649: entrainment of circadian clock2.35E-03
82GO:0071483: cellular response to blue light2.35E-03
83GO:0009902: chloroplast relocation2.35E-03
84GO:0010021: amylopectin biosynthetic process2.35E-03
85GO:0006808: regulation of nitrogen utilization2.35E-03
86GO:0070534: protein K63-linked ubiquitination2.35E-03
87GO:0046283: anthocyanin-containing compound metabolic process3.00E-03
88GO:0009904: chloroplast accumulation movement3.00E-03
89GO:0010236: plastoquinone biosynthetic process3.00E-03
90GO:0033365: protein localization to organelle3.71E-03
91GO:0009117: nucleotide metabolic process3.71E-03
92GO:0000060: protein import into nucleus, translocation3.71E-03
93GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.71E-03
94GO:0006301: postreplication repair3.71E-03
95GO:0010304: PSII associated light-harvesting complex II catabolic process3.71E-03
96GO:0006555: methionine metabolic process3.71E-03
97GO:0009791: post-embryonic development3.98E-03
98GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.26E-03
99GO:0019509: L-methionine salvage from methylthioadenosine4.47E-03
100GO:0042372: phylloquinone biosynthetic process4.47E-03
101GO:0010076: maintenance of floral meristem identity4.47E-03
102GO:0009903: chloroplast avoidance movement4.47E-03
103GO:0010189: vitamin E biosynthetic process4.47E-03
104GO:0010019: chloroplast-nucleus signaling pathway4.47E-03
105GO:0009648: photoperiodism4.47E-03
106GO:0010077: maintenance of inflorescence meristem identity4.47E-03
107GO:1900056: negative regulation of leaf senescence5.27E-03
108GO:0010038: response to metal ion5.27E-03
109GO:0050790: regulation of catalytic activity5.27E-03
110GO:0048528: post-embryonic root development5.27E-03
111GO:0030091: protein repair6.13E-03
112GO:0009231: riboflavin biosynthetic process6.13E-03
113GO:0006102: isocitrate metabolic process6.13E-03
114GO:0006644: phospholipid metabolic process6.13E-03
115GO:0048564: photosystem I assembly6.13E-03
116GO:0015996: chlorophyll catabolic process7.03E-03
117GO:0019430: removal of superoxide radicals7.03E-03
118GO:0009821: alkaloid biosynthetic process7.97E-03
119GO:0034765: regulation of ion transmembrane transport7.97E-03
120GO:0046916: cellular transition metal ion homeostasis7.97E-03
121GO:0048507: meristem development7.97E-03
122GO:0009638: phototropism8.96E-03
123GO:0010380: regulation of chlorophyll biosynthetic process8.96E-03
124GO:1900426: positive regulation of defense response to bacterium8.96E-03
125GO:0010043: response to zinc ion9.32E-03
126GO:0007568: aging9.32E-03
127GO:0009970: cellular response to sulfate starvation1.00E-02
128GO:0006995: cellular response to nitrogen starvation1.00E-02
129GO:0006535: cysteine biosynthetic process from serine1.00E-02
130GO:0009688: abscisic acid biosynthetic process1.00E-02
131GO:0045036: protein targeting to chloroplast1.00E-02
132GO:0009641: shade avoidance1.00E-02
133GO:0006457: protein folding1.07E-02
134GO:0009773: photosynthetic electron transport in photosystem I1.11E-02
135GO:0043085: positive regulation of catalytic activity1.11E-02
136GO:0008285: negative regulation of cell proliferation1.11E-02
137GO:1903507: negative regulation of nucleic acid-templated transcription1.11E-02
138GO:0006352: DNA-templated transcription, initiation1.11E-02
139GO:0016485: protein processing1.11E-02
140GO:0010582: floral meristem determinacy1.22E-02
141GO:0009640: photomorphogenesis1.32E-02
142GO:0006807: nitrogen compound metabolic process1.33E-02
143GO:0009718: anthocyanin-containing compound biosynthetic process1.33E-02
144GO:0009767: photosynthetic electron transport chain1.33E-02
145GO:0006829: zinc II ion transport1.33E-02
146GO:0009644: response to high light intensity1.43E-02
147GO:0010207: photosystem II assembly1.45E-02
148GO:0010020: chloroplast fission1.45E-02
149GO:0007015: actin filament organization1.45E-02
150GO:0031347: regulation of defense response1.60E-02
151GO:0006071: glycerol metabolic process1.70E-02
152GO:0008299: isoprenoid biosynthetic process1.96E-02
153GO:0006418: tRNA aminoacylation for protein translation1.96E-02
154GO:0010073: meristem maintenance1.96E-02
155GO:0051302: regulation of cell division1.96E-02
156GO:0061077: chaperone-mediated protein folding2.10E-02
157GO:0031408: oxylipin biosynthetic process2.10E-02
158GO:0051321: meiotic cell cycle2.10E-02
159GO:0006366: transcription from RNA polymerase II promoter2.10E-02
160GO:2000022: regulation of jasmonic acid mediated signaling pathway2.24E-02
161GO:0035428: hexose transmembrane transport2.24E-02
162GO:0010227: floral organ abscission2.38E-02
163GO:0006817: phosphate ion transport2.53E-02
164GO:0006284: base-excision repair2.53E-02
165GO:0015979: photosynthesis2.60E-02
166GO:0045454: cell redox homeostasis2.76E-02
167GO:0042335: cuticle development2.83E-02
168GO:0042391: regulation of membrane potential2.83E-02
169GO:0010118: stomatal movement2.83E-02
170GO:0006662: glycerol ether metabolic process2.99E-02
171GO:0010182: sugar mediated signaling pathway2.99E-02
172GO:0046323: glucose import2.99E-02
173GO:0009741: response to brassinosteroid2.99E-02
174GO:0019252: starch biosynthetic process3.31E-02
175GO:0000302: response to reactive oxygen species3.47E-02
176GO:0006281: DNA repair3.58E-02
177GO:0030163: protein catabolic process3.81E-02
178GO:0006464: cellular protein modification process3.98E-02
179GO:0071805: potassium ion transmembrane transport4.15E-02
180GO:0007623: circadian rhythm4.38E-02
181GO:0016126: sterol biosynthetic process4.51E-02
182GO:0010228: vegetative to reproductive phase transition of meristem4.58E-02
183GO:0009816: defense response to bacterium, incompatible interaction4.69E-02
184GO:0042128: nitrate assimilation4.87E-02
185GO:0009739: response to gibberellin4.89E-02
RankGO TermAdjusted P value
1GO:0043530: adenosine 5'-monophosphoramidase activity0.00E+00
2GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
3GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
4GO:0022883: zinc efflux transmembrane transporter activity0.00E+00
5GO:0015205: nucleobase transmembrane transporter activity0.00E+00
6GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
7GO:0047710: bis(5'-adenosyl)-triphosphatase activity0.00E+00
8GO:0046905: phytoene synthase activity0.00E+00
9GO:0008482: sulfite oxidase activity0.00E+00
10GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
11GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
12GO:0042030: ATPase inhibitor activity0.00E+00
13GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
14GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
15GO:0050342: tocopherol O-methyltransferase activity0.00E+00
16GO:0016719: carotene 7,8-desaturase activity0.00E+00
17GO:0045436: lycopene beta cyclase activity0.00E+00
18GO:0010307: acetylglutamate kinase regulator activity0.00E+00
19GO:0003913: DNA photolyase activity1.89E-05
20GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.89E-05
21GO:0004180: carboxypeptidase activity1.89E-05
22GO:0016491: oxidoreductase activity3.25E-05
23GO:0047627: adenylylsulfatase activity4.18E-05
24GO:0004559: alpha-mannosidase activity2.28E-04
25GO:0004824: lysine-tRNA ligase activity3.44E-04
26GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity3.44E-04
27GO:0016783: sulfurtransferase activity3.44E-04
28GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity3.44E-04
29GO:0004121: cystathionine beta-lyase activity3.44E-04
30GO:0051996: squalene synthase activity3.44E-04
31GO:0030941: chloroplast targeting sequence binding3.44E-04
32GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.44E-04
33GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.44E-04
34GO:0004485: methylcrotonoyl-CoA carboxylase activity3.44E-04
35GO:0004123: cystathionine gamma-lyase activity3.44E-04
36GO:0035671: enone reductase activity3.44E-04
37GO:0046906: tetrapyrrole binding3.44E-04
38GO:0008237: metallopeptidase activity6.98E-04
39GO:0050347: trans-octaprenyltranstransferase activity7.51E-04
40GO:0009973: adenylyl-sulfate reductase activity7.51E-04
41GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity7.51E-04
42GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity7.51E-04
43GO:0004412: homoserine dehydrogenase activity7.51E-04
44GO:0004046: aminoacylase activity7.51E-04
45GO:0004450: isocitrate dehydrogenase (NADP+) activity7.51E-04
46GO:0003988: acetyl-CoA C-acyltransferase activity7.51E-04
47GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.51E-04
48GO:0005366: myo-inositol:proton symporter activity7.51E-04
49GO:0033741: adenylyl-sulfate reductase (glutathione) activity7.51E-04
50GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity7.51E-04
51GO:0033201: alpha-1,4-glucan synthase activity7.51E-04
52GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.21E-03
53GO:0010277: chlorophyllide a oxygenase [overall] activity1.21E-03
54GO:0046524: sucrose-phosphate synthase activity1.21E-03
55GO:0004373: glycogen (starch) synthase activity1.21E-03
56GO:0003962: cystathionine gamma-synthase activity1.21E-03
57GO:0032947: protein complex scaffold1.21E-03
58GO:0004848: ureidoglycolate hydrolase activity1.21E-03
59GO:0050307: sucrose-phosphate phosphatase activity1.21E-03
60GO:0004075: biotin carboxylase activity1.21E-03
61GO:0004557: alpha-galactosidase activity1.21E-03
62GO:0003935: GTP cyclohydrolase II activity1.21E-03
63GO:0004096: catalase activity1.21E-03
64GO:0016887: ATPase activity1.48E-03
65GO:0000254: C-4 methylsterol oxidase activity1.75E-03
66GO:0048027: mRNA 5'-UTR binding1.75E-03
67GO:0004416: hydroxyacylglutathione hydrolase activity1.75E-03
68GO:0004792: thiosulfate sulfurtransferase activity1.75E-03
69GO:0003883: CTP synthase activity1.75E-03
70GO:0016851: magnesium chelatase activity1.75E-03
71GO:0008106: alcohol dehydrogenase (NADP+) activity1.75E-03
72GO:0009882: blue light photoreceptor activity1.75E-03
73GO:0009001: serine O-acetyltransferase activity1.75E-03
74GO:0004176: ATP-dependent peptidase activity2.11E-03
75GO:0016987: sigma factor activity2.35E-03
76GO:0009011: starch synthase activity2.35E-03
77GO:0001053: plastid sigma factor activity2.35E-03
78GO:0051861: glycolipid binding2.35E-03
79GO:0019104: DNA N-glycosylase activity2.35E-03
80GO:0016407: acetyltransferase activity3.00E-03
81GO:0004623: phospholipase A2 activity3.00E-03
82GO:0030151: molybdenum ion binding3.00E-03
83GO:0008080: N-acetyltransferase activity3.45E-03
84GO:0004709: MAP kinase kinase kinase activity3.71E-03
85GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity3.71E-03
86GO:0000293: ferric-chelate reductase activity3.71E-03
87GO:0010181: FMN binding3.71E-03
88GO:0004784: superoxide dismutase activity3.71E-03
89GO:0048038: quinone binding4.26E-03
90GO:0016157: sucrose synthase activity4.47E-03
91GO:0005242: inward rectifier potassium channel activity4.47E-03
92GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.85E-03
93GO:0016621: cinnamoyl-CoA reductase activity5.27E-03
94GO:0009881: photoreceptor activity5.27E-03
95GO:0019899: enzyme binding5.27E-03
96GO:0046914: transition metal ion binding7.03E-03
97GO:0008236: serine-type peptidase activity7.65E-03
98GO:0008889: glycerophosphodiester phosphodiesterase activity7.97E-03
99GO:0071949: FAD binding7.97E-03
100GO:0004222: metalloendopeptidase activity8.89E-03
101GO:0005381: iron ion transmembrane transporter activity8.96E-03
102GO:0045309: protein phosphorylated amino acid binding8.96E-03
103GO:0016844: strictosidine synthase activity8.96E-03
104GO:0050897: cobalt ion binding9.32E-03
105GO:0019904: protein domain specific binding1.11E-02
106GO:0004129: cytochrome-c oxidase activity1.11E-02
107GO:0042802: identical protein binding1.31E-02
108GO:0015266: protein channel activity1.33E-02
109GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.33E-02
110GO:0005315: inorganic phosphate transmembrane transporter activity1.33E-02
111GO:0031072: heat shock protein binding1.33E-02
112GO:0000155: phosphorelay sensor kinase activity1.33E-02
113GO:0000287: magnesium ion binding1.64E-02
114GO:0005528: FK506 binding1.83E-02
115GO:0001046: core promoter sequence-specific DNA binding1.83E-02
116GO:0003714: transcription corepressor activity1.83E-02
117GO:0051536: iron-sulfur cluster binding1.83E-02
118GO:0003954: NADH dehydrogenase activity1.83E-02
119GO:0008408: 3'-5' exonuclease activity2.10E-02
120GO:0008233: peptidase activity2.16E-02
121GO:0022891: substrate-specific transmembrane transporter activity2.38E-02
122GO:0051082: unfolded protein binding2.55E-02
123GO:0005515: protein binding2.57E-02
124GO:0047134: protein-disulfide reductase activity2.68E-02
125GO:0004812: aminoacyl-tRNA ligase activity2.68E-02
126GO:0030551: cyclic nucleotide binding2.83E-02
127GO:0005249: voltage-gated potassium channel activity2.83E-02
128GO:0005355: glucose transmembrane transporter activity3.15E-02
129GO:0050662: coenzyme binding3.15E-02
130GO:0004791: thioredoxin-disulfide reductase activity3.15E-02
131GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.27E-02
132GO:0004518: nuclease activity3.64E-02
133GO:0004197: cysteine-type endopeptidase activity3.64E-02
134GO:0015144: carbohydrate transmembrane transporter activity3.81E-02
135GO:0016791: phosphatase activity3.98E-02
136GO:0005351: sugar:proton symporter activity4.29E-02
137GO:0016168: chlorophyll binding4.69E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast5.32E-23
2GO:0009535: chloroplast thylakoid membrane2.90E-06
3GO:0031969: chloroplast membrane4.54E-05
4GO:0005777: peroxisome1.86E-04
5GO:0000152: nuclear ubiquitin ligase complex3.44E-04
6GO:0031932: TORC2 complex3.44E-04
7GO:0031972: chloroplast intermembrane space3.44E-04
8GO:0009570: chloroplast stroma4.31E-04
9GO:0042644: chloroplast nucleoid5.47E-04
10GO:0005747: mitochondrial respiratory chain complex I6.90E-04
11GO:0031304: intrinsic component of mitochondrial inner membrane7.51E-04
12GO:0009534: chloroplast thylakoid8.13E-04
13GO:0009706: chloroplast inner membrane8.70E-04
14GO:0009941: chloroplast envelope8.93E-04
15GO:0010287: plastoglobule1.12E-03
16GO:0010007: magnesium chelatase complex1.21E-03
17GO:0009509: chromoplast1.21E-03
18GO:0031931: TORC1 complex1.21E-03
19GO:0005773: vacuole1.30E-03
20GO:0005759: mitochondrial matrix1.72E-03
21GO:0005739: mitochondrion1.72E-03
22GO:0009532: plastid stroma2.11E-03
23GO:0009526: plastid envelope2.35E-03
24GO:0009517: PSII associated light-harvesting complex II2.35E-03
25GO:0009527: plastid outer membrane2.35E-03
26GO:0031372: UBC13-MMS2 complex2.35E-03
27GO:0009840: chloroplastic endopeptidase Clp complex4.47E-03
28GO:0031359: integral component of chloroplast outer membrane5.27E-03
29GO:0010319: stromule5.49E-03
30GO:0031982: vesicle6.13E-03
31GO:0009501: amyloplast6.13E-03
32GO:0009514: glyoxysome7.03E-03
33GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.97E-03
34GO:0009707: chloroplast outer membrane8.05E-03
35GO:0016604: nuclear body8.96E-03
36GO:0005764: lysosome1.45E-02
37GO:0042651: thylakoid membrane1.96E-02
38GO:0045271: respiratory chain complex I1.96E-02
39GO:0005744: mitochondrial inner membrane presequence translocase complex2.53E-02
40GO:0009543: chloroplast thylakoid lumen3.19E-02
41GO:0009536: plastid3.24E-02
42GO:0009523: photosystem II3.31E-02
43GO:0009705: plant-type vacuole membrane4.38E-02
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Gene type



Gene DE type