Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G61560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032499: detection of peptidoglycan0.00E+00
2GO:2001143: N-methylnicotinate transport0.00E+00
3GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
4GO:0009560: embryo sac egg cell differentiation0.00E+00
5GO:0034263: positive regulation of autophagy in response to ER overload0.00E+00
6GO:2000630: positive regulation of miRNA metabolic process0.00E+00
7GO:0090352: regulation of nitrate assimilation0.00E+00
8GO:2001142: nicotinate transport0.00E+00
9GO:0032497: detection of lipopolysaccharide0.00E+00
10GO:0080050: regulation of seed development0.00E+00
11GO:0042353: fucose biosynthetic process0.00E+00
12GO:2000636: positive regulation of primary miRNA processing0.00E+00
13GO:0010247: detection of phosphate ion0.00E+00
14GO:0019481: L-alanine catabolic process, by transamination0.00E+00
15GO:0010046: response to mycotoxin0.00E+00
16GO:0006468: protein phosphorylation3.15E-07
17GO:0010200: response to chitin9.45E-07
18GO:0046777: protein autophosphorylation1.07E-06
19GO:0010337: regulation of salicylic acid metabolic process1.12E-06
20GO:0006955: immune response3.16E-06
21GO:0048544: recognition of pollen1.16E-05
22GO:0002679: respiratory burst involved in defense response2.31E-05
23GO:1902347: response to strigolactone4.19E-05
24GO:0070588: calcium ion transmembrane transport5.11E-05
25GO:0007166: cell surface receptor signaling pathway1.99E-04
26GO:2000070: regulation of response to water deprivation2.25E-04
27GO:0045010: actin nucleation2.25E-04
28GO:0034628: 'de novo' NAD biosynthetic process from aspartate2.46E-04
29GO:0009966: regulation of signal transduction2.46E-04
30GO:0099132: ATP hydrolysis coupled cation transmembrane transport2.46E-04
31GO:0051180: vitamin transport2.46E-04
32GO:0010113: negative regulation of systemic acquired resistance2.46E-04
33GO:0030974: thiamine pyrophosphate transport2.46E-04
34GO:0080157: regulation of plant-type cell wall organization or biogenesis2.46E-04
35GO:0032491: detection of molecule of fungal origin2.46E-04
36GO:0051865: protein autoubiquitination3.36E-04
37GO:0006904: vesicle docking involved in exocytosis3.73E-04
38GO:0009742: brassinosteroid mediated signaling pathway4.47E-04
39GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.66E-04
40GO:0019538: protein metabolic process4.67E-04
41GO:0010015: root morphogenesis5.39E-04
42GO:0046740: transport of virus in host, cell to cell5.44E-04
43GO:0046939: nucleotide phosphorylation5.44E-04
44GO:0010155: regulation of proton transport5.44E-04
45GO:0042754: negative regulation of circadian rhythm5.44E-04
46GO:0010372: positive regulation of gibberellin biosynthetic process5.44E-04
47GO:2000030: regulation of response to red or far red light5.44E-04
48GO:0015893: drug transport5.44E-04
49GO:0052542: defense response by callose deposition5.44E-04
50GO:0008219: cell death6.09E-04
51GO:0045087: innate immune response8.21E-04
52GO:0046854: phosphatidylinositol phosphorylation8.79E-04
53GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation8.83E-04
54GO:0010447: response to acidic pH8.83E-04
55GO:0080168: abscisic acid transport8.83E-04
56GO:0070475: rRNA base methylation8.83E-04
57GO:0051176: positive regulation of sulfur metabolic process8.83E-04
58GO:0045793: positive regulation of cell size8.83E-04
59GO:0006887: exocytosis1.02E-03
60GO:0009863: salicylic acid mediated signaling pathway1.08E-03
61GO:0010071: root meristem specification1.26E-03
62GO:0034219: carbohydrate transmembrane transport1.26E-03
63GO:0033014: tetrapyrrole biosynthetic process1.26E-03
64GO:0030100: regulation of endocytosis1.26E-03
65GO:0009399: nitrogen fixation1.26E-03
66GO:0015696: ammonium transport1.26E-03
67GO:0071323: cellular response to chitin1.26E-03
68GO:0006986: response to unfolded protein1.26E-03
69GO:0015743: malate transport1.68E-03
70GO:0033320: UDP-D-xylose biosynthetic process1.68E-03
71GO:0010483: pollen tube reception1.68E-03
72GO:0072488: ammonium transmembrane transport1.68E-03
73GO:0006536: glutamate metabolic process1.68E-03
74GO:0006817: phosphate ion transport1.68E-03
75GO:0071219: cellular response to molecule of bacterial origin1.68E-03
76GO:0001709: cell fate determination1.68E-03
77GO:0009694: jasmonic acid metabolic process1.68E-03
78GO:0009960: endosperm development2.12E-03
79GO:0045489: pectin biosynthetic process2.12E-03
80GO:0009435: NAD biosynthetic process2.15E-03
81GO:0030308: negative regulation of cell growth2.15E-03
82GO:0009164: nucleoside catabolic process2.15E-03
83GO:0030041: actin filament polymerization2.15E-03
84GO:0009823: cytokinin catabolic process2.15E-03
85GO:0045038: protein import into chloroplast thylakoid membrane2.15E-03
86GO:0010193: response to ozone2.61E-03
87GO:0006751: glutathione catabolic process2.65E-03
88GO:0010256: endomembrane system organization2.65E-03
89GO:0000470: maturation of LSU-rRNA2.65E-03
90GO:0042732: D-xylose metabolic process2.65E-03
91GO:0048317: seed morphogenesis2.65E-03
92GO:0042742: defense response to bacterium2.91E-03
93GO:0009611: response to wounding2.96E-03
94GO:0009861: jasmonic acid and ethylene-dependent systemic resistance3.18E-03
95GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.18E-03
96GO:0080113: regulation of seed growth3.18E-03
97GO:0010044: response to aluminum ion3.75E-03
98GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway3.75E-03
99GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway3.75E-03
100GO:0009845: seed germination3.76E-03
101GO:0009816: defense response to bacterium, incompatible interaction3.98E-03
102GO:0006402: mRNA catabolic process4.35E-03
103GO:0009787: regulation of abscisic acid-activated signaling pathway4.35E-03
104GO:0009690: cytokinin metabolic process4.35E-03
105GO:0010078: maintenance of root meristem identity4.35E-03
106GO:1900150: regulation of defense response to fungus4.35E-03
107GO:0048658: anther wall tapetum development4.35E-03
108GO:0010492: maintenance of shoot apical meristem identity4.35E-03
109GO:0009737: response to abscisic acid4.39E-03
110GO:0016049: cell growth4.66E-03
111GO:0009699: phenylpropanoid biosynthetic process4.98E-03
112GO:0009932: cell tip growth4.98E-03
113GO:0060321: acceptance of pollen4.98E-03
114GO:0006997: nucleus organization4.98E-03
115GO:0030968: endoplasmic reticulum unfolded protein response4.98E-03
116GO:0009060: aerobic respiration5.65E-03
117GO:0098656: anion transmembrane transport5.65E-03
118GO:0007338: single fertilization5.65E-03
119GO:0046685: response to arsenic-containing substance5.65E-03
120GO:0006783: heme biosynthetic process5.65E-03
121GO:0048589: developmental growth5.65E-03
122GO:0016051: carbohydrate biosynthetic process6.21E-03
123GO:0006779: porphyrin-containing compound biosynthetic process6.33E-03
124GO:0008202: steroid metabolic process6.33E-03
125GO:0048829: root cap development7.06E-03
126GO:0006782: protoporphyrinogen IX biosynthetic process7.06E-03
127GO:0009870: defense response signaling pathway, resistance gene-dependent7.06E-03
128GO:0071365: cellular response to auxin stimulus8.58E-03
129GO:0010105: negative regulation of ethylene-activated signaling pathway8.58E-03
130GO:0016925: protein sumoylation8.58E-03
131GO:0050826: response to freezing9.38E-03
132GO:0055046: microgametogenesis9.38E-03
133GO:0009414: response to water deprivation9.38E-03
134GO:0034605: cellular response to heat1.02E-02
135GO:0009969: xyloglucan biosynthetic process1.11E-02
136GO:0009225: nucleotide-sugar metabolic process1.11E-02
137GO:0080188: RNA-directed DNA methylation1.11E-02
138GO:0090351: seedling development1.11E-02
139GO:0010224: response to UV-B1.12E-02
140GO:0035556: intracellular signal transduction1.18E-02
141GO:2000377: regulation of reactive oxygen species metabolic process1.29E-02
142GO:0009626: plant-type hypersensitive response1.37E-02
143GO:0061077: chaperone-mediated protein folding1.47E-02
144GO:0016998: cell wall macromolecule catabolic process1.47E-02
145GO:0009553: embryo sac development1.50E-02
146GO:0009624: response to nematode1.54E-02
147GO:0031348: negative regulation of defense response1.57E-02
148GO:0010017: red or far-red light signaling pathway1.57E-02
149GO:0016226: iron-sulfur cluster assembly1.57E-02
150GO:0030433: ubiquitin-dependent ERAD pathway1.57E-02
151GO:0035428: hexose transmembrane transport1.57E-02
152GO:0016310: phosphorylation1.67E-02
153GO:0071215: cellular response to abscisic acid stimulus1.67E-02
154GO:0009686: gibberellin biosynthetic process1.67E-02
155GO:0010089: xylem development1.77E-02
156GO:0009306: protein secretion1.77E-02
157GO:0000398: mRNA splicing, via spliceosome1.78E-02
158GO:0042147: retrograde transport, endosome to Golgi1.88E-02
159GO:0042631: cellular response to water deprivation1.99E-02
160GO:0000271: polysaccharide biosynthetic process1.99E-02
161GO:0080022: primary root development1.99E-02
162GO:0006397: mRNA processing2.03E-02
163GO:0046323: glucose import2.09E-02
164GO:0009741: response to brassinosteroid2.09E-02
165GO:0046686: response to cadmium ion2.10E-02
166GO:0009791: post-embryonic development2.32E-02
167GO:0010183: pollen tube guidance2.32E-02
168GO:0009749: response to glucose2.32E-02
169GO:0002229: defense response to oomycetes2.43E-02
170GO:0031047: gene silencing by RNA2.55E-02
171GO:0009873: ethylene-activated signaling pathway2.65E-02
172GO:1901657: glycosyl compound metabolic process2.67E-02
173GO:0007623: circadian rhythm2.67E-02
174GO:0010090: trichome morphogenesis2.67E-02
175GO:0006914: autophagy2.79E-02
176GO:0010286: heat acclimation2.91E-02
177GO:0007267: cell-cell signaling2.91E-02
178GO:0009615: response to virus3.16E-02
179GO:0006979: response to oxidative stress3.16E-02
180GO:0001666: response to hypoxia3.16E-02
181GO:0010468: regulation of gene expression3.19E-02
182GO:0006952: defense response3.29E-02
183GO:0009627: systemic acquired resistance3.42E-02
184GO:0015995: chlorophyll biosynthetic process3.55E-02
185GO:0048573: photoperiodism, flowering3.55E-02
186GO:0009738: abscisic acid-activated signaling pathway3.78E-02
187GO:0048481: plant ovule development3.82E-02
188GO:0009817: defense response to fungus, incompatible interaction3.82E-02
189GO:0009555: pollen development3.93E-02
190GO:0010311: lateral root formation3.96E-02
191GO:0006499: N-terminal protein myristoylation4.10E-02
192GO:0009910: negative regulation of flower development4.24E-02
193GO:0010119: regulation of stomatal movement4.24E-02
194GO:0006970: response to osmotic stress4.44E-02
195GO:0009637: response to blue light4.52E-02
196GO:0009723: response to ethylene4.76E-02
197GO:0009409: response to cold4.83E-02
198GO:0048366: leaf development4.85E-02
199GO:0006839: mitochondrial transport4.96E-02
RankGO TermAdjusted P value
1GO:0080123: jasmonate-amino synthetase activity0.00E+00
2GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
3GO:0090416: nicotinate transporter activity0.00E+00
4GO:0010857: calcium-dependent protein kinase activity0.00E+00
5GO:0070566: adenylyltransferase activity0.00E+00
6GO:0008987: quinolinate synthetase A activity0.00E+00
7GO:0005522: profilin binding0.00E+00
8GO:0047734: CDP-glycerol diphosphatase activity0.00E+00
9GO:2001080: chitosan binding0.00E+00
10GO:0090417: N-methylnicotinate transporter activity0.00E+00
11GO:0030621: U4 snRNA binding0.00E+00
12GO:0005524: ATP binding4.20E-09
13GO:0016301: kinase activity7.74E-09
14GO:0004674: protein serine/threonine kinase activity4.70E-07
15GO:0004672: protein kinase activity5.90E-06
16GO:0019888: protein phosphatase regulator activity3.48E-05
17GO:0005388: calcium-transporting ATPase activity3.48E-05
18GO:0047631: ADP-ribose diphosphatase activity6.67E-05
19GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.31E-04
20GO:0090422: thiamine pyrophosphate transporter activity2.46E-04
21GO:0015085: calcium ion transmembrane transporter activity2.46E-04
22GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity2.46E-04
23GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity2.46E-04
24GO:0090440: abscisic acid transporter activity2.46E-04
25GO:0005516: calmodulin binding4.35E-04
26GO:1990585: hydroxyproline O-arabinosyltransferase activity5.44E-04
27GO:0004103: choline kinase activity5.44E-04
28GO:0008883: glutamyl-tRNA reductase activity5.44E-04
29GO:0016614: oxidoreductase activity, acting on CH-OH group of donors7.31E-04
30GO:0003840: gamma-glutamyltransferase activity8.83E-04
31GO:0036374: glutathione hydrolase activity8.83E-04
32GO:0004383: guanylate cyclase activity8.83E-04
33GO:0004351: glutamate decarboxylase activity1.26E-03
34GO:0019201: nucleotide kinase activity1.26E-03
35GO:0001653: peptide receptor activity1.26E-03
36GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.26E-03
37GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity1.26E-03
38GO:0019789: SUMO transferase activity1.26E-03
39GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.26E-03
40GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.42E-03
41GO:0043015: gamma-tubulin binding1.68E-03
42GO:0019199: transmembrane receptor protein kinase activity1.68E-03
43GO:0005253: anion channel activity1.68E-03
44GO:0031625: ubiquitin protein ligase binding1.86E-03
45GO:0002020: protease binding2.15E-03
46GO:0004356: glutamate-ammonia ligase activity2.15E-03
47GO:0017070: U6 snRNA binding2.15E-03
48GO:0019139: cytokinin dehydrogenase activity2.15E-03
49GO:0018685: alkane 1-monooxygenase activity2.15E-03
50GO:0003779: actin binding2.46E-03
51GO:0008519: ammonium transmembrane transporter activity2.65E-03
52GO:0048040: UDP-glucuronate decarboxylase activity2.65E-03
53GO:0000210: NAD+ diphosphatase activity2.65E-03
54GO:0035673: oligopeptide transmembrane transporter activity2.65E-03
55GO:0051020: GTPase binding3.18E-03
56GO:0070403: NAD+ binding3.18E-03
57GO:0004017: adenylate kinase activity3.18E-03
58GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides3.18E-03
59GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.18E-03
60GO:0004143: diacylglycerol kinase activity3.75E-03
61GO:0016621: cinnamoyl-CoA reductase activity3.75E-03
62GO:0019899: enzyme binding3.75E-03
63GO:0015140: malate transmembrane transporter activity3.75E-03
64GO:0008143: poly(A) binding3.75E-03
65GO:0015144: carbohydrate transmembrane transporter activity4.27E-03
66GO:0004714: transmembrane receptor protein tyrosine kinase activity4.35E-03
67GO:0030246: carbohydrate binding4.80E-03
68GO:0005351: sugar:proton symporter activity4.97E-03
69GO:0008142: oxysterol binding4.98E-03
70GO:0003951: NAD+ kinase activity4.98E-03
71GO:0004430: 1-phosphatidylinositol 4-kinase activity4.98E-03
72GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity7.06E-03
73GO:0008047: enzyme activator activity7.06E-03
74GO:0015198: oligopeptide transporter activity8.58E-03
75GO:0004521: endoribonuclease activity8.58E-03
76GO:0046982: protein heterodimerization activity8.71E-03
77GO:0005315: inorganic phosphate transmembrane transporter activity9.38E-03
78GO:0008131: primary amine oxidase activity1.02E-02
79GO:0050660: flavin adenine dinucleotide binding1.07E-02
80GO:0008061: chitin binding1.11E-02
81GO:0051119: sugar transmembrane transporter activity1.11E-02
82GO:0019706: protein-cysteine S-palmitoyltransferase activity1.47E-02
83GO:0004540: ribonuclease activity1.47E-02
84GO:0033612: receptor serine/threonine kinase binding1.47E-02
85GO:0042803: protein homodimerization activity1.57E-02
86GO:0022891: substrate-specific transmembrane transporter activity1.67E-02
87GO:0008514: organic anion transmembrane transporter activity1.77E-02
88GO:0016758: transferase activity, transferring hexosyl groups1.89E-02
89GO:0008536: Ran GTPase binding2.09E-02
90GO:0009055: electron carrier activity2.10E-02
91GO:0005355: glucose transmembrane transporter activity2.21E-02
92GO:0050662: coenzyme binding2.21E-02
93GO:0019901: protein kinase binding2.32E-02
94GO:0004518: nuclease activity2.55E-02
95GO:0051015: actin filament binding2.67E-02
96GO:0009931: calcium-dependent protein serine/threonine kinase activity3.42E-02
97GO:0004683: calmodulin-dependent protein kinase activity3.55E-02
98GO:0102483: scopolin beta-glucosidase activity3.55E-02
99GO:0030247: polysaccharide binding3.55E-02
100GO:0015238: drug transmembrane transporter activity3.96E-02
101GO:0046872: metal ion binding4.47E-02
102GO:0004712: protein serine/threonine/tyrosine kinase activity4.81E-02
103GO:0008422: beta-glucosidase activity4.81E-02
104GO:0050661: NADP binding4.96E-02
105GO:0051539: 4 iron, 4 sulfur cluster binding4.96E-02
RankGO TermAdjusted P value
1GO:0045335: phagocytic vesicle0.00E+00
2GO:0043680: filiform apparatus0.00E+00
3GO:0005886: plasma membrane1.95E-13
4GO:0000145: exocyst1.78E-05
5GO:0070062: extracellular exosome2.31E-05
6GO:0016021: integral component of membrane3.08E-05
7GO:0005768: endosome3.22E-05
8GO:0005911: cell-cell junction2.46E-04
9GO:0016442: RISC complex2.46E-04
10GO:0010008: endosome membrane3.19E-04
11GO:0010494: cytoplasmic stress granule3.36E-04
12GO:0005802: trans-Golgi network5.01E-04
13GO:0000159: protein phosphatase type 2A complex5.39E-04
14GO:0080085: signal recognition particle, chloroplast targeting5.44E-04
15GO:0009506: plasmodesma8.48E-04
16GO:0005829: cytosol1.48E-03
17GO:0032580: Golgi cisterna membrane3.16E-03
18GO:0030173: integral component of Golgi membrane3.18E-03
19GO:0016363: nuclear matrix3.18E-03
20GO:0046540: U4/U6 x U5 tri-snRNP complex4.98E-03
21GO:0015030: Cajal body6.33E-03
22GO:0005887: integral component of plasma membrane7.27E-03
23GO:0031902: late endosome membrane7.39E-03
24GO:0048471: perinuclear region of cytoplasm7.80E-03
25GO:0019013: viral nucleocapsid9.38E-03
26GO:0005783: endoplasmic reticulum9.85E-03
27GO:0005794: Golgi apparatus1.12E-02
28GO:0005635: nuclear envelope1.16E-02
29GO:0043234: protein complex1.20E-02
30GO:0005681: spliceosomal complex1.28E-02
31GO:0016607: nuclear speck1.32E-02
32GO:0030136: clathrin-coated vesicle1.88E-02
33GO:0005770: late endosome2.09E-02
34GO:0043231: intracellular membrane-bounded organelle2.18E-02
35GO:0016020: membrane2.42E-02
36GO:0005778: peroxisomal membrane2.91E-02
37GO:0000932: P-body3.16E-02
38GO:0005788: endoplasmic reticulum lumen3.29E-02
39GO:0019005: SCF ubiquitin ligase complex3.82E-02
40GO:0005643: nuclear pore3.82E-02
41GO:0000786: nucleosome4.38E-02
42GO:0080008: Cul4-RING E3 ubiquitin ligase complex4.52E-02
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Gene type



Gene DE type