Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G61170

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1990258: histone glutamine methylation0.00E+00
2GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
3GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
4GO:0044843: cell cycle G1/S phase transition0.00E+00
5GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
6GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
7GO:0009264: deoxyribonucleotide catabolic process0.00E+00
8GO:0000494: box C/D snoRNA 3'-end processing0.00E+00
9GO:0034050: host programmed cell death induced by symbiont0.00E+00
10GO:0046487: glyoxylate metabolic process0.00E+00
11GO:0006412: translation5.34E-166
12GO:0042254: ribosome biogenesis2.55E-63
13GO:0000027: ribosomal large subunit assembly4.16E-15
14GO:0006626: protein targeting to mitochondrion1.86E-10
15GO:0000028: ribosomal small subunit assembly1.30E-06
16GO:0006364: rRNA processing8.21E-06
17GO:0006820: anion transport1.40E-05
18GO:0045905: positive regulation of translational termination1.94E-05
19GO:0045901: positive regulation of translational elongation1.94E-05
20GO:0006452: translational frameshifting1.94E-05
21GO:0009967: positive regulation of signal transduction1.94E-05
22GO:0009955: adaxial/abaxial pattern specification2.53E-05
23GO:0009735: response to cytokinin2.64E-05
24GO:0030150: protein import into mitochondrial matrix4.76E-05
25GO:1902626: assembly of large subunit precursor of preribosome6.35E-05
26GO:0002181: cytoplasmic translation6.35E-05
27GO:0006413: translational initiation1.01E-04
28GO:0010162: seed dormancy process1.73E-04
29GO:0042274: ribosomal small subunit biogenesis2.25E-04
30GO:0031167: rRNA methylation3.38E-04
31GO:0045040: protein import into mitochondrial outer membrane4.71E-04
32GO:1901430: positive regulation of syringal lignin biosynthetic process6.72E-04
33GO:0019877: diaminopimelate biosynthetic process6.72E-04
34GO:0032365: intracellular lipid transport6.72E-04
35GO:0090449: phloem glucosinolate loading6.72E-04
36GO:0006407: rRNA export from nucleus6.72E-04
37GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process6.72E-04
38GO:0015801: aromatic amino acid transport6.72E-04
39GO:0030490: maturation of SSU-rRNA6.72E-04
40GO:0006434: seryl-tRNA aminoacylation6.72E-04
41GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.72E-04
42GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.72E-04
43GO:1901349: glucosinolate transport6.72E-04
44GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c7.97E-04
45GO:0009409: response to cold1.17E-03
46GO:0001510: RNA methylation1.20E-03
47GO:0008033: tRNA processing1.24E-03
48GO:0098656: anion transmembrane transport1.44E-03
49GO:0015786: UDP-glucose transport1.45E-03
50GO:0045859: regulation of protein kinase activity1.45E-03
51GO:0009156: ribonucleoside monophosphate biosynthetic process1.45E-03
52GO:0006123: mitochondrial electron transport, cytochrome c to oxygen1.45E-03
53GO:0048569: post-embryonic animal organ development1.45E-03
54GO:0009651: response to salt stress1.53E-03
55GO:0000387: spliceosomal snRNP assembly1.71E-03
56GO:0008652: cellular amino acid biosynthetic process2.39E-03
57GO:0009150: purine ribonucleotide metabolic process2.39E-03
58GO:0015783: GDP-fucose transport2.39E-03
59GO:0010476: gibberellin mediated signaling pathway2.39E-03
60GO:0042256: mature ribosome assembly2.39E-03
61GO:0045039: protein import into mitochondrial inner membrane2.39E-03
62GO:0006446: regulation of translational initiation3.41E-03
63GO:0006165: nucleoside diphosphate phosphorylation3.48E-03
64GO:0006228: UTP biosynthetic process3.48E-03
65GO:0006164: purine nucleotide biosynthetic process3.48E-03
66GO:0009855: determination of bilateral symmetry3.48E-03
67GO:0032981: mitochondrial respiratory chain complex I assembly3.48E-03
68GO:0046513: ceramide biosynthetic process3.48E-03
69GO:0033617: mitochondrial respiratory chain complex IV assembly3.48E-03
70GO:0070301: cellular response to hydrogen peroxide3.48E-03
71GO:0006241: CTP biosynthetic process3.48E-03
72GO:0072334: UDP-galactose transmembrane transport3.48E-03
73GO:0006869: lipid transport3.71E-03
74GO:0006414: translational elongation4.38E-03
75GO:0046686: response to cadmium ion4.41E-03
76GO:0051205: protein insertion into membrane4.69E-03
77GO:0009165: nucleotide biosynthetic process4.69E-03
78GO:0006183: GTP biosynthetic process4.69E-03
79GO:0010363: regulation of plant-type hypersensitive response4.69E-03
80GO:0042273: ribosomal large subunit biogenesis4.69E-03
81GO:0009944: polarity specification of adaxial/abaxial axis4.74E-03
82GO:0000398: mRNA splicing, via spliceosome5.05E-03
83GO:0009793: embryo development ending in seed dormancy5.62E-03
84GO:0015992: proton transport5.77E-03
85GO:0006461: protein complex assembly6.03E-03
86GO:1902183: regulation of shoot apical meristem development6.03E-03
87GO:0071493: cellular response to UV-B6.03E-03
88GO:0007005: mitochondrion organization6.33E-03
89GO:0009294: DNA mediated transformation6.91E-03
90GO:0040007: growth6.91E-03
91GO:0071215: cellular response to abscisic acid stimulus6.91E-03
92GO:0000741: karyogamy7.49E-03
93GO:0001731: formation of translation preinitiation complex7.49E-03
94GO:0000470: maturation of LSU-rRNA7.49E-03
95GO:0008283: cell proliferation7.61E-03
96GO:0006458: 'de novo' protein folding9.06E-03
97GO:0000054: ribosomal subunit export from nucleus9.06E-03
98GO:0000245: spliceosomal complex assembly9.06E-03
99GO:0009648: photoperiodism9.06E-03
100GO:1901001: negative regulation of response to salt stress9.06E-03
101GO:0010197: polar nucleus fusion9.53E-03
102GO:1900056: negative regulation of leaf senescence1.07E-02
103GO:0080186: developmental vegetative growth1.07E-02
104GO:0009749: response to glucose1.10E-02
105GO:0051603: proteolysis involved in cellular protein catabolic process1.17E-02
106GO:0006635: fatty acid beta-oxidation1.18E-02
107GO:0009617: response to bacterium1.23E-02
108GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.25E-02
109GO:0001558: regulation of cell growth1.44E-02
110GO:0010204: defense response signaling pathway, resistance gene-independent1.44E-02
111GO:0043562: cellular response to nitrogen levels1.44E-02
112GO:0022900: electron transport chain1.44E-02
113GO:0006189: 'de novo' IMP biosynthetic process1.64E-02
114GO:0009060: aerobic respiration1.64E-02
115GO:0015780: nucleotide-sugar transport1.64E-02
116GO:0007338: single fertilization1.64E-02
117GO:0009245: lipid A biosynthetic process1.64E-02
118GO:0042761: very long-chain fatty acid biosynthetic process1.85E-02
119GO:0009870: defense response signaling pathway, resistance gene-dependent2.06E-02
120GO:0030422: production of siRNA involved in RNA interference2.06E-02
121GO:0009682: induced systemic resistance2.29E-02
122GO:0009089: lysine biosynthetic process via diaminopimelate2.29E-02
123GO:0015770: sucrose transport2.29E-02
124GO:0010015: root morphogenesis2.29E-02
125GO:0006913: nucleocytoplasmic transport2.29E-02
126GO:0006811: ion transport2.48E-02
127GO:0008361: regulation of cell size2.52E-02
128GO:0006790: sulfur compound metabolic process2.52E-02
129GO:0012501: programmed cell death2.52E-02
130GO:0009845: seed germination2.57E-02
131GO:0010043: response to zinc ion2.60E-02
132GO:0042744: hydrogen peroxide catabolic process2.74E-02
133GO:0010102: lateral root morphogenesis2.76E-02
134GO:0002237: response to molecule of bacterial origin3.01E-02
135GO:0048467: gynoecium development3.01E-02
136GO:0090351: seedling development3.26E-02
137GO:0015031: protein transport3.66E-02
138GO:0006289: nucleotide-excision repair3.79E-02
139GO:0009116: nucleoside metabolic process3.79E-02
140GO:0009644: response to high light intensity3.97E-02
141GO:0051302: regulation of cell division4.07E-02
142GO:0009965: leaf morphogenesis4.12E-02
143GO:0003333: amino acid transmembrane transport4.35E-02
144GO:0051260: protein homooligomerization4.35E-02
145GO:0048511: rhythmic process4.35E-02
146GO:0010431: seed maturation4.35E-02
147GO:0061077: chaperone-mediated protein folding4.35E-02
148GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.44E-02
RankGO TermAdjusted P value
1GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
2GO:1990259: histone-glutamine methyltransferase activity0.00E+00
3GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
4GO:0003735: structural constituent of ribosome6.48E-204
5GO:0003729: mRNA binding1.25E-38
6GO:0019843: rRNA binding8.96E-16
7GO:0015288: porin activity1.61E-08
8GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity5.23E-07
9GO:0008308: voltage-gated anion channel activity2.16E-06
10GO:0003723: RNA binding2.55E-06
11GO:0003746: translation elongation factor activity1.74E-05
12GO:0005078: MAP-kinase scaffold activity1.94E-05
13GO:0003743: translation initiation factor activity3.13E-05
14GO:0030515: snoRNA binding3.90E-05
15GO:0043022: ribosome binding5.67E-05
16GO:0008649: rRNA methyltransferase activity6.35E-05
17GO:0008097: 5S rRNA binding1.32E-04
18GO:0001055: RNA polymerase II activity1.37E-04
19GO:0001054: RNA polymerase I activity2.14E-04
20GO:0001056: RNA polymerase III activity2.60E-04
21GO:0004407: histone deacetylase activity5.67E-04
22GO:0047326: inositol tetrakisphosphate 5-kinase activity6.72E-04
23GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity6.72E-04
24GO:0005080: protein kinase C binding6.72E-04
25GO:0090448: glucosinolate:proton symporter activity6.72E-04
26GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity6.72E-04
27GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H6.72E-04
28GO:0035614: snRNA stem-loop binding6.72E-04
29GO:0008840: 4-hydroxy-tetrahydrodipicolinate synthase6.72E-04
30GO:0000824: inositol tetrakisphosphate 3-kinase activity6.72E-04
31GO:0004828: serine-tRNA ligase activity6.72E-04
32GO:0004679: AMP-activated protein kinase activity6.72E-04
33GO:0004298: threonine-type endopeptidase activity7.29E-04
34GO:0030619: U1 snRNA binding1.45E-03
35GO:0004634: phosphopyruvate hydratase activity1.45E-03
36GO:0050291: sphingosine N-acyltransferase activity1.45E-03
37GO:0004618: phosphoglycerate kinase activity1.45E-03
38GO:0015173: aromatic amino acid transmembrane transporter activity1.45E-03
39GO:0004750: ribulose-phosphate 3-epimerase activity1.45E-03
40GO:0032934: sterol binding1.45E-03
41GO:0000166: nucleotide binding1.68E-03
42GO:0044183: protein binding involved in protein folding2.31E-03
43GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.36E-03
44GO:0032947: protein complex scaffold2.39E-03
45GO:0008253: 5'-nucleotidase activity2.39E-03
46GO:0005457: GDP-fucose transmembrane transporter activity2.39E-03
47GO:0015462: ATPase-coupled protein transmembrane transporter activity2.39E-03
48GO:0015266: protein channel activity3.02E-03
49GO:0005460: UDP-glucose transmembrane transporter activity3.48E-03
50GO:0004550: nucleoside diphosphate kinase activity3.48E-03
51GO:0047627: adenylylsulfatase activity3.48E-03
52GO:0004749: ribose phosphate diphosphokinase activity3.48E-03
53GO:0019201: nucleotide kinase activity3.48E-03
54GO:0070628: proteasome binding4.69E-03
55GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances4.69E-03
56GO:0005275: amine transmembrane transporter activity6.03E-03
57GO:0004040: amidase activity6.03E-03
58GO:0005459: UDP-galactose transmembrane transporter activity6.03E-03
59GO:0031593: polyubiquitin binding7.49E-03
60GO:0031177: phosphopantetheine binding7.49E-03
61GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity7.49E-03
62GO:0008289: lipid binding8.94E-03
63GO:0004017: adenylate kinase activity9.06E-03
64GO:0000035: acyl binding9.06E-03
65GO:0019887: protein kinase regulator activity9.06E-03
66GO:0004656: procollagen-proline 4-dioxygenase activity9.06E-03
67GO:0005338: nucleotide-sugar transmembrane transporter activity1.07E-02
68GO:0008235: metalloexopeptidase activity1.07E-02
69GO:0008121: ubiquinol-cytochrome-c reductase activity1.07E-02
70GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.25E-02
71GO:0008135: translation factor activity, RNA binding1.44E-02
72GO:0008515: sucrose transmembrane transporter activity2.29E-02
73GO:0008233: peptidase activity2.44E-02
74GO:0051119: sugar transmembrane transporter activity3.26E-02
75GO:0031418: L-ascorbic acid binding3.79E-02
76GO:0043130: ubiquitin binding3.79E-02
77GO:0005216: ion channel activity4.07E-02
78GO:0051087: chaperone binding4.07E-02
79GO:0036459: thiol-dependent ubiquitinyl hydrolase activity4.35E-02
80GO:0046872: metal ion binding4.90E-02
RankGO TermAdjusted P value
1GO:0005832: chaperonin-containing T-complex0.00E+00
2GO:0043186: P granule0.00E+00
3GO:0005840: ribosome3.39E-139
4GO:0022625: cytosolic large ribosomal subunit2.53E-132
5GO:0022626: cytosolic ribosome7.58E-126
6GO:0022627: cytosolic small ribosomal subunit1.27E-83
7GO:0005730: nucleolus1.59E-51
8GO:0005829: cytosol2.03E-45
9GO:0005737: cytoplasm4.63E-43
10GO:0009506: plasmodesma5.03E-36
11GO:0015934: large ribosomal subunit6.61E-24
12GO:0005774: vacuolar membrane2.33E-23
13GO:0016020: membrane1.73E-16
14GO:0015935: small ribosomal subunit1.00E-12
15GO:0005618: cell wall5.98E-12
16GO:0005773: vacuole6.07E-12
17GO:0005741: mitochondrial outer membrane2.88E-09
18GO:0046930: pore complex3.16E-08
19GO:0005742: mitochondrial outer membrane translocase complex2.16E-06
20GO:0009507: chloroplast5.97E-06
21GO:0005886: plasma membrane1.40E-05
22GO:0005665: DNA-directed RNA polymerase II, core complex1.40E-05
23GO:0031428: box C/D snoRNP complex1.51E-05
24GO:0005758: mitochondrial intermembrane space4.76E-05
25GO:0005853: eukaryotic translation elongation factor 1 complex6.35E-05
26GO:0005736: DNA-directed RNA polymerase I complex1.06E-04
27GO:0005666: DNA-directed RNA polymerase III complex1.37E-04
28GO:0015030: Cajal body1.37E-04
29GO:0000418: DNA-directed RNA polymerase IV complex1.73E-04
30GO:0032040: small-subunit processome2.60E-04
31GO:0019013: viral nucleocapsid3.11E-04
32GO:0000419: DNA-directed RNA polymerase V complex4.95E-04
33GO:0030686: 90S preribosome6.72E-04
34GO:0005839: proteasome core complex7.29E-04
35GO:0031359: integral component of chloroplast outer membrane7.97E-04
36GO:0005744: mitochondrial inner membrane presequence translocase complex1.02E-03
37GO:0005743: mitochondrial inner membrane1.21E-03
38GO:0005685: U1 snRNP1.44E-03
39GO:0000015: phosphopyruvate hydratase complex1.45E-03
40GO:0071011: precatalytic spliceosome1.71E-03
41GO:0005740: mitochondrial envelope2.00E-03
42GO:0071013: catalytic step 2 spliceosome2.31E-03
43GO:0005852: eukaryotic translation initiation factor 3 complex2.31E-03
44GO:0000502: proteasome complex2.36E-03
45GO:0034719: SMN-Sm protein complex2.39E-03
46GO:0005681: spliceosomal complex3.05E-03
47GO:0005834: heterotrimeric G-protein complex3.36E-03
48GO:0005732: small nucleolar ribonucleoprotein complex4.63E-03
49GO:0005682: U5 snRNP4.69E-03
50GO:0016471: vacuolar proton-transporting V-type ATPase complex4.69E-03
51GO:0070469: respiratory chain5.24E-03
52GO:0005687: U4 snRNP6.03E-03
53GO:0097526: spliceosomal tri-snRNP complex6.03E-03
54GO:0016282: eukaryotic 43S preinitiation complex7.49E-03
55GO:0000974: Prp19 complex7.49E-03
56GO:0033290: eukaryotic 48S preinitiation complex9.06E-03
57GO:0005689: U12-type spliceosomal complex9.06E-03
58GO:0016272: prefoldin complex9.06E-03
59GO:0071004: U2-type prespliceosome1.25E-02
60GO:0005622: intracellular1.71E-02
61GO:0030529: intracellular ribonucleoprotein complex1.72E-02
62GO:0005686: U2 snRNP2.06E-02
63GO:0009707: chloroplast outer membrane2.25E-02
64GO:0048471: perinuclear region of cytoplasm2.29E-02
65GO:0031307: integral component of mitochondrial outer membrane2.52E-02
66GO:0005750: mitochondrial respiratory chain complex III3.01E-02
67GO:0005759: mitochondrial matrix3.10E-02
68GO:0009536: plastid3.40E-02
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Gene type



Gene DE type