co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G60710

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007141: male meiosis I	0.00E+00
2	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
3	GO:0009560: embryo sac egg cell differentiation	0.00E+00
4	GO:0034263: positive regulation of autophagy in response to ER overload	0.00E+00
5	GO:0006562: proline catabolic process	5.79E-05
6	GO:0018920: glyphosate metabolic process	5.79E-05
7	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	5.79E-05
8	GO:0046686: response to cadmium ion	1.13E-04
9	GO:0019521: D-gluconate metabolic process	1.41E-04
10	GO:0010372: positive regulation of gibberellin biosynthetic process	1.41E-04
11	GO:0010133: proline catabolic process to glutamate	1.41E-04
12	GO:0006611: protein export from nucleus	1.41E-04
13	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	2.40E-04
14	GO:0051176: positive regulation of sulfur metabolic process	2.40E-04
15	GO:0000055: ribosomal large subunit export from nucleus	2.40E-04
16	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	2.40E-04
17	GO:0030100: regulation of endocytosis	3.49E-04
18	GO:0009399: nitrogen fixation	3.49E-04
19	GO:0006537: glutamate biosynthetic process	3.49E-04
20	GO:0006986: response to unfolded protein	3.49E-04
21	GO:0009749: response to glucose	3.61E-04
22	GO:0006536: glutamate metabolic process	4.66E-04
23	GO:0001709: cell fate determination	4.66E-04
24	GO:0015743: malate transport	4.66E-04
25	GO:0033320: UDP-D-xylose biosynthetic process	4.66E-04
26	GO:0009816: defense response to bacterium, incompatible interaction	5.85E-04
27	GO:0006090: pyruvate metabolic process	5.92E-04
28	GO:0030041: actin filament polymerization	5.92E-04
29	GO:0007029: endoplasmic reticulum organization	5.92E-04
30	GO:0009435: NAD biosynthetic process	5.92E-04
31	GO:0042732: D-xylose metabolic process	7.24E-04
32	GO:0048317: seed morphogenesis	7.24E-04
33	GO:0006796: phosphate-containing compound metabolic process	7.24E-04
34	GO:0006014: D-ribose metabolic process	7.24E-04
35	GO:0048232: male gamete generation	7.24E-04
36	GO:0009423: chorismate biosynthetic process	8.63E-04
37	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	1.01E-03
38	GO:0006401: RNA catabolic process	1.01E-03
39	GO:1900150: regulation of defense response to fungus	1.16E-03
40	GO:0006402: mRNA catabolic process	1.16E-03
41	GO:0045010: actin nucleation	1.16E-03
42	GO:0030968: endoplasmic reticulum unfolded protein response	1.32E-03
43	GO:0010208: pollen wall assembly	1.32E-03
44	GO:0009051: pentose-phosphate shunt, oxidative branch	1.48E-03
45	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	1.48E-03
46	GO:0009060: aerobic respiration	1.48E-03
47	GO:0046685: response to arsenic-containing substance	1.48E-03
48	GO:0009408: response to heat	1.55E-03
49	GO:0008202: steroid metabolic process	1.65E-03
50	GO:0051026: chiasma assembly	1.83E-03
51	GO:0048829: root cap development	1.83E-03
52	GO:0009073: aromatic amino acid family biosynthetic process	2.02E-03
53	GO:0009750: response to fructose	2.02E-03
54	GO:0009873: ethylene-activated signaling pathway	2.14E-03
55	GO:0006820: anion transport	2.21E-03
56	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.21E-03
57	GO:0006108: malate metabolic process	2.41E-03
58	GO:0034605: cellular response to heat	2.62E-03
59	GO:0009225: nucleotide-sugar metabolic process	2.82E-03
60	GO:0042753: positive regulation of circadian rhythm	3.04E-03
61	GO:0009863: salicylic acid mediated signaling pathway	3.26E-03
62	GO:0061077: chaperone-mediated protein folding	3.72E-03
63	GO:0051260: protein homooligomerization	3.72E-03
64	GO:0016226: iron-sulfur cluster assembly	3.95E-03
65	GO:0007131: reciprocal meiotic recombination	3.95E-03
66	GO:0030433: ubiquitin-dependent ERAD pathway	3.95E-03
67	GO:0009686: gibberellin biosynthetic process	4.20E-03
68	GO:0009306: protein secretion	4.44E-03
69	GO:0009737: response to abscisic acid	4.83E-03
70	GO:0009960: endosperm development	5.21E-03
71	GO:0048544: recognition of pollen	5.48E-03
72	GO:0019252: starch biosynthetic process	5.75E-03
73	GO:0006970: response to osmotic stress	6.10E-03
74	GO:0031047: gene silencing by RNA	6.31E-03
75	GO:1901657: glycosyl compound metabolic process	6.59E-03
76	GO:0006914: autophagy	6.88E-03
77	GO:0006310: DNA recombination	6.88E-03
78	GO:0010286: heat acclimation	7.18E-03
79	GO:0007267: cell-cell signaling	7.18E-03
80	GO:0010200: response to chitin	7.26E-03
81	GO:0001666: response to hypoxia	7.78E-03
82	GO:0009615: response to virus	7.78E-03
83	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	8.08E-03
84	GO:0010311: lateral root formation	9.69E-03
85	GO:0009834: plant-type secondary cell wall biogenesis	1.00E-02
86	GO:0006499: N-terminal protein myristoylation	1.00E-02
87	GO:0006468: protein phosphorylation	1.04E-02
88	GO:0006397: mRNA processing	1.08E-02
89	GO:0016051: carbohydrate biosynthetic process	1.11E-02
90	GO:0006897: endocytosis	1.25E-02
91	GO:0009744: response to sucrose	1.32E-02
92	GO:0051707: response to other organism	1.32E-02
93	GO:0009636: response to toxic substance	1.44E-02
94	GO:0006260: DNA replication	1.51E-02
95	GO:0006364: rRNA processing	1.63E-02
96	GO:0009738: abscisic acid-activated signaling pathway	1.79E-02
97	GO:0009620: response to fungus	1.97E-02
98	GO:0009553: embryo sac development	2.05E-02
99	GO:0042545: cell wall modification	2.05E-02
100	GO:0009624: response to nematode	2.10E-02
101	GO:0009742: brassinosteroid mediated signaling pathway	2.19E-02
102	GO:0000398: mRNA splicing, via spliceosome	2.32E-02
103	GO:0006457: protein folding	2.39E-02
104	GO:0006511: ubiquitin-dependent protein catabolic process	2.51E-02
105	GO:0009058: biosynthetic process	2.55E-02
106	GO:0009845: seed germination	2.60E-02
107	GO:0006633: fatty acid biosynthetic process	2.89E-02
108	GO:0007623: circadian rhythm	3.09E-02
109	GO:0045490: pectin catabolic process	3.09E-02
110	GO:0016567: protein ubiquitination	3.18E-02
111	GO:0007166: cell surface receptor signaling pathway	3.40E-02
112	GO:0010468: regulation of gene expression	3.51E-02
113	GO:0008380: RNA splicing	3.51E-02
114	GO:0009617: response to bacterium	3.51E-02
115	GO:0009723: response to ethylene	4.68E-02
116	GO:0048366: leaf development	4.74E-02
117	GO:0080167: response to karrikin	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0008987: quinolinate synthetase A activity	0.00E+00
2	GO:0047734: CDP-glycerol diphosphatase activity	0.00E+00
3	GO:0030621: U4 snRNA binding	0.00E+00
4	GO:0030544: Hsp70 protein binding	5.79E-05
5	GO:0004657: proline dehydrogenase activity	5.79E-05
6	GO:0003866: 3-phosphoshikimate 1-carboxyvinyltransferase activity	5.79E-05
7	GO:0008114: phosphogluconate 2-dehydrogenase activity	5.79E-05
8	GO:0004540: ribonuclease activity	1.87E-04
9	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	2.40E-04
10	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	3.49E-04
11	GO:0043023: ribosomal large subunit binding	3.49E-04
12	GO:0004351: glutamate decarboxylase activity	3.49E-04
13	GO:0043015: gamma-tubulin binding	4.66E-04
14	GO:0004470: malic enzyme activity	4.66E-04
15	GO:0005253: anion channel activity	4.66E-04
16	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	4.66E-04
17	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	4.66E-04
18	GO:0008948: oxaloacetate decarboxylase activity	5.92E-04
19	GO:0047631: ADP-ribose diphosphatase activity	5.92E-04
20	GO:0002020: protease binding	5.92E-04
21	GO:0004356: glutamate-ammonia ligase activity	5.92E-04
22	GO:0017070: U6 snRNA binding	5.92E-04
23	GO:0008381: mechanically-gated ion channel activity	5.92E-04
24	GO:0016462: pyrophosphatase activity	7.24E-04
25	GO:0048040: UDP-glucuronate decarboxylase activity	7.24E-04
26	GO:0004747: ribokinase activity	8.63E-04
27	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	8.63E-04
28	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	8.63E-04
29	GO:0070403: NAD+ binding	8.63E-04
30	GO:0102425: myricetin 3-O-glucosyltransferase activity	1.01E-03
31	GO:0102360: daphnetin 3-O-glucosyltransferase activity	1.01E-03
32	GO:0004427: inorganic diphosphatase activity	1.01E-03
33	GO:0015140: malate transmembrane transporter activity	1.01E-03
34	GO:0004143: diacylglycerol kinase activity	1.01E-03
35	GO:0008865: fructokinase activity	1.16E-03
36	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.16E-03
37	GO:0003951: NAD+ kinase activity	1.32E-03
38	GO:0008142: oxysterol binding	1.32E-03
39	GO:0008047: enzyme activator activity	1.83E-03
40	GO:0003779: actin binding	2.08E-03
41	GO:0004521: endoribonuclease activity	2.21E-03
42	GO:0000175: 3'-5'-exoribonuclease activity	2.41E-03
43	GO:0035251: UDP-glucosyltransferase activity	3.72E-03
44	GO:0004674: protein serine/threonine kinase activity	4.76E-03
45	GO:0008536: Ran GTPase binding	5.21E-03
46	GO:0005524: ATP binding	5.34E-03
47	GO:0004518: nuclease activity	6.31E-03
48	GO:0102483: scopolin beta-glucosidase activity	8.71E-03
49	GO:0046872: metal ion binding	9.74E-03
50	GO:0008422: beta-glucosidase activity	1.18E-02
51	GO:0051539: 4 iron, 4 sulfur cluster binding	1.21E-02
52	GO:0004672: protein kinase activity	1.27E-02
53	GO:0043621: protein self-association	1.40E-02
54	GO:0035091: phosphatidylinositol binding	1.40E-02
55	GO:0016301: kinase activity	1.40E-02
56	GO:0051287: NAD binding	1.51E-02
57	GO:0031625: ubiquitin protein ligase binding	1.75E-02
58	GO:0045330: aspartyl esterase activity	1.75E-02
59	GO:0000166: nucleotide binding	1.85E-02
60	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.97E-02
61	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.97E-02
62	GO:0030599: pectinesterase activity	2.01E-02
63	GO:0051082: unfolded protein binding	2.10E-02
64	GO:0016758: transferase activity, transferring hexosyl groups	2.41E-02
65	GO:0030246: carbohydrate binding	2.49E-02
66	GO:0030170: pyridoxal phosphate binding	2.65E-02
67	GO:0008565: protein transporter activity	2.80E-02
68	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.94E-02
69	GO:0008017: microtubule binding	3.20E-02
70	GO:0008194: UDP-glycosyltransferase activity	3.35E-02
71	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.67E-02
72	GO:0000287: magnesium ion binding	4.17E-02

Rank	GO Term	Adjusted P value
1	GO:0016442: RISC complex	5.79E-05
2	GO:0030688: preribosome, small subunit precursor	5.79E-05
3	GO:0000932: P-body	5.54E-04
4	GO:0000178: exosome (RNase complex)	5.92E-04
5	GO:0005829: cytosol	7.37E-04
6	GO:0016363: nuclear matrix	8.63E-04
7	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.32E-03
8	GO:0010494: cytoplasmic stress granule	1.48E-03
9	GO:0048471: perinuclear region of cytoplasm	2.02E-03
10	GO:0005886: plasma membrane	2.29E-03
11	GO:0019013: viral nucleocapsid	2.41E-03
12	GO:0009506: plasmodesma	2.84E-03
13	GO:0005618: cell wall	3.26E-03
14	GO:0000790: nuclear chromatin	4.69E-03
15	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	6.21E-03
16	GO:0032580: Golgi cisterna membrane	6.88E-03
17	GO:0005788: endoplasmic reticulum lumen	8.08E-03
18	GO:0005643: nuclear pore	9.36E-03
19	GO:0019005: SCF ubiquitin ligase complex	9.36E-03
20	GO:0005635: nuclear envelope	1.71E-02
21	GO:0005681: spliceosomal complex	1.84E-02
22	GO:0016607: nuclear speck	1.88E-02
23	GO:0009524: phragmoplast	2.55E-02
24	GO:0009705: plant-type vacuole membrane	3.09E-02
25	GO:0005768: endosome	3.36E-02
26	GO:0005774: vacuolar membrane	3.73E-02
27	GO:0005737: cytoplasm	4.52E-02
28	GO:0009505: plant-type cell wall	4.67E-02