co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G60640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030149: sphingolipid catabolic process	0.00E+00
2	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
3	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
4	GO:0006489: dolichyl diphosphate biosynthetic process	0.00E+00
5	GO:0001881: receptor recycling	0.00E+00
6	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
7	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
8	GO:0006511: ubiquitin-dependent protein catabolic process	1.53E-10
9	GO:0034976: response to endoplasmic reticulum stress	7.80E-06
10	GO:0051603: proteolysis involved in cellular protein catabolic process	2.38E-05
11	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	5.57E-05
12	GO:0010265: SCF complex assembly	9.88E-05
13	GO:1990542: mitochondrial transmembrane transport	9.88E-05
14	GO:0046686: response to cadmium ion	1.11E-04
15	GO:0015786: UDP-glucose transport	2.32E-04
16	GO:0019752: carboxylic acid metabolic process	2.32E-04
17	GO:0051788: response to misfolded protein	2.32E-04
18	GO:0015783: GDP-fucose transport	3.86E-04
19	GO:0046168: glycerol-3-phosphate catabolic process	3.86E-04
20	GO:0008333: endosome to lysosome transport	3.86E-04
21	GO:0055074: calcium ion homeostasis	3.86E-04
22	GO:0006457: protein folding	4.71E-04
23	GO:0006168: adenine salvage	5.54E-04
24	GO:0071786: endoplasmic reticulum tubular network organization	5.54E-04
25	GO:0006882: cellular zinc ion homeostasis	5.54E-04
26	GO:0001676: long-chain fatty acid metabolic process	5.54E-04
27	GO:0046513: ceramide biosynthetic process	5.54E-04
28	GO:0006166: purine ribonucleoside salvage	5.54E-04
29	GO:0072334: UDP-galactose transmembrane transport	5.54E-04
30	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	5.54E-04
31	GO:0006072: glycerol-3-phosphate metabolic process	5.54E-04
32	GO:0009647: skotomorphogenesis	5.54E-04
33	GO:0010051: xylem and phloem pattern formation	5.80E-04
34	GO:0010387: COP9 signalosome assembly	7.37E-04
35	GO:0010363: regulation of plant-type hypersensitive response	7.37E-04
36	GO:0030163: protein catabolic process	8.66E-04
37	GO:1902183: regulation of shoot apical meristem development	9.32E-04
38	GO:0044209: AMP salvage	9.32E-04
39	GO:0045116: protein neddylation	9.32E-04
40	GO:0036065: fucosylation	9.32E-04
41	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.14E-03
42	GO:0043248: proteasome assembly	1.14E-03
43	GO:0009733: response to auxin	1.26E-03
44	GO:0009612: response to mechanical stimulus	1.36E-03
45	GO:0000245: spliceosomal complex assembly	1.36E-03
46	GO:1901001: negative regulation of response to salt stress	1.36E-03
47	GO:0048528: post-embryonic root development	1.59E-03
48	GO:0000338: protein deneddylation	1.59E-03
49	GO:0010043: response to zinc ion	1.61E-03
50	GO:0009690: cytokinin metabolic process	1.84E-03
51	GO:0031540: regulation of anthocyanin biosynthetic process	1.84E-03
52	GO:0010417: glucuronoxylan biosynthetic process	2.10E-03
53	GO:0010100: negative regulation of photomorphogenesis	2.10E-03
54	GO:0010093: specification of floral organ identity	2.10E-03
55	GO:0015780: nucleotide-sugar transport	2.37E-03
56	GO:0098656: anion transmembrane transport	2.37E-03
57	GO:0046685: response to arsenic-containing substance	2.37E-03
58	GO:0071577: zinc II ion transmembrane transport	2.65E-03
59	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.65E-03
60	GO:0042761: very long-chain fatty acid biosynthetic process	2.65E-03
61	GO:0045454: cell redox homeostasis	2.91E-03
62	GO:0006378: mRNA polyadenylation	3.25E-03
63	GO:0010072: primary shoot apical meristem specification	3.25E-03
64	GO:0006820: anion transport	3.57E-03
65	GO:0010102: lateral root morphogenesis	3.89E-03
66	GO:0007034: vacuolar transport	4.22E-03
67	GO:0009969: xyloglucan biosynthetic process	4.57E-03
68	GO:0006289: nucleotide-excision repair	5.28E-03
69	GO:0006487: protein N-linked glycosylation	5.28E-03
70	GO:0009116: nucleoside metabolic process	5.28E-03
71	GO:0015992: proton transport	6.03E-03
72	GO:0061077: chaperone-mediated protein folding	6.03E-03
73	GO:0030433: ubiquitin-dependent ERAD pathway	6.42E-03
74	GO:0010584: pollen exine formation	7.23E-03
75	GO:0045492: xylan biosynthetic process	7.23E-03
76	GO:0007623: circadian rhythm	7.43E-03
77	GO:0042147: retrograde transport, endosome to Golgi	7.64E-03
78	GO:0000413: protein peptidyl-prolyl isomerization	8.07E-03
79	GO:0009739: response to gibberellin	8.31E-03
80	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	8.31E-03
81	GO:0048868: pollen tube development	8.50E-03
82	GO:0010154: fruit development	8.50E-03
83	GO:0008360: regulation of cell shape	8.50E-03
84	GO:0006520: cellular amino acid metabolic process	8.50E-03
85	GO:0009651: response to salt stress	8.56E-03
86	GO:0048825: cotyledon development	9.39E-03
87	GO:0006623: protein targeting to vacuole	9.39E-03
88	GO:0010183: pollen tube guidance	9.39E-03
89	GO:0080156: mitochondrial mRNA modification	9.85E-03
90	GO:0010193: response to ozone	9.85E-03
91	GO:0009567: double fertilization forming a zygote and endosperm	1.13E-02
92	GO:0016579: protein deubiquitination	1.23E-02
93	GO:0009627: systemic acquired resistance	1.38E-02
94	GO:0009817: defense response to fungus, incompatible interaction	1.54E-02
95	GO:0009832: plant-type cell wall biogenesis	1.60E-02
96	GO:0009834: plant-type secondary cell wall biogenesis	1.65E-02
97	GO:0009853: photorespiration	1.82E-02
98	GO:0030001: metal ion transport	2.00E-02
99	GO:0006631: fatty acid metabolic process	2.06E-02
100	GO:0009926: auxin polar transport	2.18E-02
101	GO:0009640: photomorphogenesis	2.18E-02
102	GO:0008643: carbohydrate transport	2.31E-02
103	GO:0031347: regulation of defense response	2.50E-02
104	GO:0009846: pollen germination	2.57E-02
105	GO:0009736: cytokinin-activated signaling pathway	2.70E-02
106	GO:0006486: protein glycosylation	2.70E-02
107	GO:0009585: red, far-red light phototransduction	2.70E-02
108	GO:0009909: regulation of flower development	2.90E-02
109	GO:0048367: shoot system development	3.11E-02
110	GO:0009553: embryo sac development	3.39E-02
111	GO:0018105: peptidyl-serine phosphorylation	3.54E-02
112	GO:0009742: brassinosteroid mediated signaling pathway	3.62E-02
113	GO:0009845: seed germination	4.30E-02
114	GO:0016036: cellular response to phosphate starvation	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
2	GO:0016881: acid-amino acid ligase activity	0.00E+00
3	GO:0055105: ubiquitin-protein transferase inhibitor activity	0.00E+00
4	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
5	GO:0004298: threonine-type endopeptidase activity	2.15E-18
6	GO:0008233: peptidase activity	3.33E-15
7	GO:0003756: protein disulfide isomerase activity	2.04E-05
8	GO:0004656: procollagen-proline 4-dioxygenase activity	3.14E-05
9	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	9.88E-05
10	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	9.88E-05
11	GO:0000824: inositol tetrakisphosphate 3-kinase activity	9.88E-05
12	GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	9.88E-05
13	GO:0047326: inositol tetrakisphosphate 5-kinase activity	9.88E-05
14	GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity	2.32E-04
15	GO:0050291: sphingosine N-acyltransferase activity	2.32E-04
16	GO:0019781: NEDD8 activating enzyme activity	2.32E-04
17	GO:0047517: 1,4-beta-D-xylan synthase activity	2.32E-04
18	GO:0031418: L-ascorbic acid binding	3.16E-04
19	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	3.86E-04
20	GO:0005457: GDP-fucose transmembrane transporter activity	3.86E-04
21	GO:0015018: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	3.86E-04
22	GO:0003999: adenine phosphoribosyltransferase activity	5.54E-04
23	GO:0005460: UDP-glucose transmembrane transporter activity	5.54E-04
24	GO:0017077: oxidative phosphorylation uncoupler activity	5.54E-04
25	GO:0009678: hydrogen-translocating pyrophosphatase activity	5.54E-04
26	GO:0004576: oligosaccharyl transferase activity	7.37E-04
27	GO:0070628: proteasome binding	7.37E-04
28	GO:0042285: xylosyltransferase activity	9.32E-04
29	GO:0005459: UDP-galactose transmembrane transporter activity	9.32E-04
30	GO:0008641: small protein activating enzyme activity	9.32E-04
31	GO:0004040: amidase activity	9.32E-04
32	GO:0036402: proteasome-activating ATPase activity	1.14E-03
33	GO:0031593: polyubiquitin binding	1.14E-03
34	GO:0102391: decanoate--CoA ligase activity	1.36E-03
35	GO:0004467: long-chain fatty acid-CoA ligase activity	1.59E-03
36	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	1.59E-03
37	GO:0016831: carboxy-lyase activity	1.59E-03
38	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.59E-03
39	GO:0004427: inorganic diphosphatase activity	1.59E-03
40	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.77E-03
41	GO:0015288: porin activity	1.84E-03
42	GO:0008308: voltage-gated anion channel activity	2.10E-03
43	GO:0000989: transcription factor activity, transcription factor binding	2.37E-03
44	GO:0008417: fucosyltransferase activity	2.37E-03
45	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.64E-03
46	GO:0045309: protein phosphorylated amino acid binding	2.65E-03
47	GO:0019904: protein domain specific binding	3.25E-03
48	GO:0017025: TBP-class protein binding	4.57E-03
49	GO:0005385: zinc ion transmembrane transporter activity	5.28E-03
50	GO:0043130: ubiquitin binding	5.28E-03
51	GO:0005528: FK506 binding	5.28E-03
52	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	6.03E-03
53	GO:0016887: ATPase activity	6.62E-03
54	GO:0008514: organic anion transmembrane transporter activity	7.23E-03
55	GO:0046873: metal ion transmembrane transporter activity	8.50E-03
56	GO:0016853: isomerase activity	8.94E-03
57	GO:0003684: damaged DNA binding	1.13E-02
58	GO:0008237: metallopeptidase activity	1.18E-02
59	GO:0005515: protein binding	1.23E-02
60	GO:0008375: acetylglucosaminyltransferase activity	1.38E-02
61	GO:0003746: translation elongation factor activity	1.82E-02
62	GO:0003697: single-stranded DNA binding	1.82E-02
63	GO:0003993: acid phosphatase activity	1.88E-02
64	GO:0004722: protein serine/threonine phosphatase activity	1.88E-02
65	GO:0043621: protein self-association	2.31E-02
66	GO:0051287: NAD binding	2.50E-02
67	GO:0016757: transferase activity, transferring glycosyl groups	2.86E-02
68	GO:0003729: mRNA binding	3.16E-02
69	GO:0051082: unfolded protein binding	3.47E-02
70	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.15E-02
71	GO:0030170: pyridoxal phosphate binding	4.38E-02
72	GO:0003735: structural constituent of ribosome	4.52E-02
73	GO:0008565: protein transporter activity	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	2.12E-21
2	GO:0005839: proteasome core complex	2.15E-18
3	GO:0005783: endoplasmic reticulum	2.93E-14
4	GO:0019773: proteasome core complex, alpha-subunit complex	1.44E-11
5	GO:0005774: vacuolar membrane	6.89E-09
6	GO:0005788: endoplasmic reticulum lumen	5.14E-08
7	GO:0005829: cytosol	1.52E-06
8	GO:0005789: endoplasmic reticulum membrane	1.53E-05
9	GO:0005794: Golgi apparatus	4.61E-05
10	GO:0009510: plasmodesmatal desmotubule	9.88E-05
11	GO:0009506: plasmodesma	1.99E-04
12	GO:0022626: cytosolic ribosome	2.70E-04
13	GO:0046861: glyoxysomal membrane	3.86E-04
14	GO:0009331: glycerol-3-phosphate dehydrogenase complex	5.54E-04
15	GO:0071782: endoplasmic reticulum tubular network	5.54E-04
16	GO:0005849: mRNA cleavage factor complex	5.54E-04
17	GO:0005773: vacuole	5.75E-04
18	GO:0005771: multivesicular body	1.14E-03
19	GO:0030904: retromer complex	1.14E-03
20	GO:0031597: cytosolic proteasome complex	1.36E-03
21	GO:0031595: nuclear proteasome complex	1.59E-03
22	GO:0016021: integral component of membrane	1.80E-03
23	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.84E-03
24	GO:0046930: pore complex	2.10E-03
25	GO:0009514: glyoxysome	2.10E-03
26	GO:0008180: COP9 signalosome	2.37E-03
27	GO:0008540: proteasome regulatory particle, base subcomplex	2.65E-03
28	GO:0005737: cytoplasm	2.93E-03
29	GO:0008541: proteasome regulatory particle, lid subcomplex	3.25E-03
30	GO:0005741: mitochondrial outer membrane	6.03E-03
31	GO:0009505: plant-type cell wall	6.41E-03
32	GO:0005886: plasma membrane	6.49E-03
33	GO:0009504: cell plate	9.39E-03
34	GO:0032580: Golgi cisterna membrane	1.13E-02
35	GO:0005802: trans-Golgi network	1.43E-02
36	GO:0009507: chloroplast	1.46E-02
37	GO:0022625: cytosolic large ribosomal subunit	1.50E-02
38	GO:0005768: endosome	1.68E-02
39	GO:0015934: large ribosomal subunit	1.71E-02
40	GO:0005819: spindle	1.94E-02
41	GO:0031902: late endosome membrane	2.06E-02
42	GO:0090406: pollen tube	2.18E-02
43	GO:0000139: Golgi membrane	2.81E-02
44	GO:0009524: phragmoplast	4.22E-02