GO Enrichment Analysis of Co-expressed Genes with
AT5G59960
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009398: FMN biosynthetic process | 0.00E+00 |
| 2 | GO:0035725: sodium ion transmembrane transport | 0.00E+00 |
| 3 | GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase | 0.00E+00 |
| 4 | GO:0001881: receptor recycling | 0.00E+00 |
| 5 | GO:0009722: detection of cytokinin stimulus | 0.00E+00 |
| 6 | GO:0006593: ornithine catabolic process | 0.00E+00 |
| 7 | GO:0071345: cellular response to cytokine stimulus | 0.00E+00 |
| 8 | GO:0071284: cellular response to lead ion | 0.00E+00 |
| 9 | GO:0042362: fat-soluble vitamin biosynthetic process | 0.00E+00 |
| 10 | GO:0006511: ubiquitin-dependent protein catabolic process | 3.23E-08 |
| 11 | GO:0051603: proteolysis involved in cellular protein catabolic process | 6.71E-07 |
| 12 | GO:0098719: sodium ion import across plasma membrane | 1.28E-05 |
| 13 | GO:0010189: vitamin E biosynthetic process | 2.78E-05 |
| 14 | GO:0071805: potassium ion transmembrane transport | 5.33E-05 |
| 15 | GO:0015996: chlorophyll catabolic process | 6.27E-05 |
| 16 | GO:1903409: reactive oxygen species biosynthetic process | 9.14E-05 |
| 17 | GO:0019544: arginine catabolic process to glutamate | 9.14E-05 |
| 18 | GO:0031468: nuclear envelope reassembly | 9.14E-05 |
| 19 | GO:0051453: regulation of intracellular pH | 9.45E-05 |
| 20 | GO:0009651: response to salt stress | 1.30E-04 |
| 21 | GO:0006631: fatty acid metabolic process | 1.72E-04 |
| 22 | GO:0019483: beta-alanine biosynthetic process | 2.16E-04 |
| 23 | GO:0009915: phloem sucrose loading | 2.16E-04 |
| 24 | GO:0006212: uracil catabolic process | 2.16E-04 |
| 25 | GO:0051788: response to misfolded protein | 2.16E-04 |
| 26 | GO:0043617: cellular response to sucrose starvation | 3.61E-04 |
| 27 | GO:0045793: positive regulation of cell size | 3.61E-04 |
| 28 | GO:0010351: lithium ion transport | 3.61E-04 |
| 29 | GO:0008333: endosome to lysosome transport | 3.61E-04 |
| 30 | GO:0051646: mitochondrion localization | 3.61E-04 |
| 31 | GO:0016226: iron-sulfur cluster assembly | 3.80E-04 |
| 32 | GO:0006012: galactose metabolic process | 4.15E-04 |
| 33 | GO:0009647: skotomorphogenesis | 5.20E-04 |
| 34 | GO:0001676: long-chain fatty acid metabolic process | 5.20E-04 |
| 35 | GO:0006572: tyrosine catabolic process | 5.20E-04 |
| 36 | GO:0032877: positive regulation of DNA endoreduplication | 5.20E-04 |
| 37 | GO:0046836: glycolipid transport | 5.20E-04 |
| 38 | GO:0051259: protein oligomerization | 5.20E-04 |
| 39 | GO:0006814: sodium ion transport | 6.07E-04 |
| 40 | GO:0051781: positive regulation of cell division | 6.90E-04 |
| 41 | GO:0006914: autophagy | 8.34E-04 |
| 42 | GO:0009697: salicylic acid biosynthetic process | 8.73E-04 |
| 43 | GO:0097428: protein maturation by iron-sulfur cluster transfer | 8.73E-04 |
| 44 | GO:0009816: defense response to bacterium, incompatible interaction | 1.04E-03 |
| 45 | GO:0006561: proline biosynthetic process | 1.07E-03 |
| 46 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.07E-03 |
| 47 | GO:0043248: proteasome assembly | 1.07E-03 |
| 48 | GO:0042732: D-xylose metabolic process | 1.07E-03 |
| 49 | GO:0009554: megasporogenesis | 1.27E-03 |
| 50 | GO:0010043: response to zinc ion | 1.46E-03 |
| 51 | GO:0048528: post-embryonic root development | 1.49E-03 |
| 52 | GO:0006810: transport | 1.68E-03 |
| 53 | GO:0031540: regulation of anthocyanin biosynthetic process | 1.72E-03 |
| 54 | GO:0055075: potassium ion homeostasis | 1.72E-03 |
| 55 | GO:0009231: riboflavin biosynthetic process | 1.72E-03 |
| 56 | GO:0046686: response to cadmium ion | 1.87E-03 |
| 57 | GO:0043562: cellular response to nitrogen levels | 1.96E-03 |
| 58 | GO:0006972: hyperosmotic response | 1.96E-03 |
| 59 | GO:0009821: alkaloid biosynthetic process | 2.21E-03 |
| 60 | GO:0080144: amino acid homeostasis | 2.21E-03 |
| 61 | GO:0034765: regulation of ion transmembrane transport | 2.21E-03 |
| 62 | GO:0090333: regulation of stomatal closure | 2.21E-03 |
| 63 | GO:0006098: pentose-phosphate shunt | 2.21E-03 |
| 64 | GO:0042538: hyperosmotic salinity response | 2.56E-03 |
| 65 | GO:0009725: response to hormone | 3.63E-03 |
| 66 | GO:0006807: nitrogen compound metabolic process | 3.63E-03 |
| 67 | GO:0009691: cytokinin biosynthetic process | 3.63E-03 |
| 68 | GO:0007034: vacuolar transport | 3.93E-03 |
| 69 | GO:0009266: response to temperature stimulus | 3.93E-03 |
| 70 | GO:0007030: Golgi organization | 4.26E-03 |
| 71 | GO:0006636: unsaturated fatty acid biosynthetic process | 4.58E-03 |
| 72 | GO:0019762: glucosinolate catabolic process | 4.58E-03 |
| 73 | GO:0009058: biosynthetic process | 5.12E-03 |
| 74 | GO:0003333: amino acid transmembrane transport | 5.62E-03 |
| 75 | GO:0048511: rhythmic process | 5.62E-03 |
| 76 | GO:0042147: retrograde transport, endosome to Golgi | 7.11E-03 |
| 77 | GO:0005975: carbohydrate metabolic process | 7.32E-03 |
| 78 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 7.49E-03 |
| 79 | GO:0034220: ion transmembrane transport | 7.51E-03 |
| 80 | GO:0010118: stomatal movement | 7.51E-03 |
| 81 | GO:0042391: regulation of membrane potential | 7.51E-03 |
| 82 | GO:0010154: fruit development | 7.91E-03 |
| 83 | GO:0061025: membrane fusion | 8.32E-03 |
| 84 | GO:0009646: response to absence of light | 8.32E-03 |
| 85 | GO:0048825: cotyledon development | 8.74E-03 |
| 86 | GO:0006623: protein targeting to vacuole | 8.74E-03 |
| 87 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 9.16E-03 |
| 88 | GO:0010193: response to ozone | 9.16E-03 |
| 89 | GO:0030163: protein catabolic process | 1.00E-02 |
| 90 | GO:0010286: heat acclimation | 1.09E-02 |
| 91 | GO:0051607: defense response to virus | 1.14E-02 |
| 92 | GO:0000910: cytokinesis | 1.14E-02 |
| 93 | GO:0009615: response to virus | 1.19E-02 |
| 94 | GO:0048366: leaf development | 1.22E-02 |
| 95 | GO:0008219: cell death | 1.43E-02 |
| 96 | GO:0009414: response to water deprivation | 1.64E-02 |
| 97 | GO:0009744: response to sucrose | 2.03E-02 |
| 98 | GO:0009636: response to toxic substance | 2.20E-02 |
| 99 | GO:0006855: drug transmembrane transport | 2.26E-02 |
| 100 | GO:0031347: regulation of defense response | 2.32E-02 |
| 101 | GO:0006812: cation transport | 2.38E-02 |
| 102 | GO:0009409: response to cold | 2.47E-02 |
| 103 | GO:0009736: cytokinin-activated signaling pathway | 2.51E-02 |
| 104 | GO:0006813: potassium ion transport | 2.51E-02 |
| 105 | GO:0055114: oxidation-reduction process | 2.70E-02 |
| 106 | GO:0009626: plant-type hypersensitive response | 2.96E-02 |
| 107 | GO:0009620: response to fungus | 3.02E-02 |
| 108 | GO:0009908: flower development | 3.06E-02 |
| 109 | GO:0009624: response to nematode | 3.22E-02 |
| 110 | GO:0042744: hydrogen peroxide catabolic process | 4.15E-02 |
| 111 | GO:0010150: leaf senescence | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032441: pheophorbide a oxygenase activity | 0.00E+00 |
| 2 | GO:0010176: homogentisate phytyltransferase activity | 0.00E+00 |
| 3 | GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity | 0.00E+00 |
| 4 | GO:0004587: ornithine-oxo-acid transaminase activity | 0.00E+00 |
| 5 | GO:0008531: riboflavin kinase activity | 0.00E+00 |
| 6 | GO:0003837: beta-ureidopropionase activity | 0.00E+00 |
| 7 | GO:0048244: phytanoyl-CoA dioxygenase activity | 0.00E+00 |
| 8 | GO:0009045: xylose isomerase activity | 0.00E+00 |
| 9 | GO:0004298: threonine-type endopeptidase activity | 3.22E-16 |
| 10 | GO:0008233: peptidase activity | 2.95E-12 |
| 11 | GO:0004034: aldose 1-epimerase activity | 4.94E-05 |
| 12 | GO:0034256: chlorophyll(ide) b reductase activity | 9.14E-05 |
| 13 | GO:0016229: steroid dehydrogenase activity | 9.14E-05 |
| 14 | GO:0001530: lipopolysaccharide binding | 9.14E-05 |
| 15 | GO:0070401: NADP+ binding | 9.14E-05 |
| 16 | GO:0030544: Hsp70 protein binding | 9.14E-05 |
| 17 | GO:0019786: Atg8-specific protease activity | 9.14E-05 |
| 18 | GO:0015386: potassium:proton antiporter activity | 1.33E-04 |
| 19 | GO:1990585: hydroxyproline O-arabinosyltransferase activity | 2.16E-04 |
| 20 | GO:0008517: folic acid transporter activity | 2.16E-04 |
| 21 | GO:0003919: FMN adenylyltransferase activity | 2.16E-04 |
| 22 | GO:0019779: Atg8 activating enzyme activity | 2.16E-04 |
| 23 | GO:0051536: iron-sulfur cluster binding | 2.85E-04 |
| 24 | GO:0052692: raffinose alpha-galactosidase activity | 3.61E-04 |
| 25 | GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity | 3.61E-04 |
| 26 | GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity | 3.61E-04 |
| 27 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 3.61E-04 |
| 28 | GO:0004557: alpha-galactosidase activity | 3.61E-04 |
| 29 | GO:0017089: glycolipid transporter activity | 5.20E-04 |
| 30 | GO:0019776: Atg8 ligase activity | 6.90E-04 |
| 31 | GO:0004659: prenyltransferase activity | 6.90E-04 |
| 32 | GO:0015368: calcium:cation antiporter activity | 6.90E-04 |
| 33 | GO:0010011: auxin binding | 6.90E-04 |
| 34 | GO:0051861: glycolipid binding | 6.90E-04 |
| 35 | GO:0015369: calcium:proton antiporter activity | 6.90E-04 |
| 36 | GO:0015385: sodium:proton antiporter activity | 7.86E-04 |
| 37 | GO:0008198: ferrous iron binding | 8.73E-04 |
| 38 | GO:0051117: ATPase binding | 1.07E-03 |
| 39 | GO:0015081: sodium ion transmembrane transporter activity | 1.07E-03 |
| 40 | GO:0005242: inward rectifier potassium channel activity | 1.27E-03 |
| 41 | GO:0102391: decanoate--CoA ligase activity | 1.27E-03 |
| 42 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.49E-03 |
| 43 | GO:0015491: cation:cation antiporter activity | 1.72E-03 |
| 44 | GO:0004033: aldo-keto reductase (NADP) activity | 1.72E-03 |
| 45 | GO:0000989: transcription factor activity, transcription factor binding | 2.21E-03 |
| 46 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.21E-03 |
| 47 | GO:0005198: structural molecule activity | 2.30E-03 |
| 48 | GO:0016844: strictosidine synthase activity | 2.48E-03 |
| 49 | GO:0008327: methyl-CpG binding | 3.03E-03 |
| 50 | GO:0008559: xenobiotic-transporting ATPase activity | 3.03E-03 |
| 51 | GO:0022857: transmembrane transporter activity | 3.67E-03 |
| 52 | GO:0031418: L-ascorbic acid binding | 4.92E-03 |
| 53 | GO:0043130: ubiquitin binding | 4.92E-03 |
| 54 | GO:0030170: pyridoxal phosphate binding | 5.39E-03 |
| 55 | GO:0030551: cyclic nucleotide binding | 7.51E-03 |
| 56 | GO:0016853: isomerase activity | 8.32E-03 |
| 57 | GO:0042802: identical protein binding | 8.51E-03 |
| 58 | GO:0004872: receptor activity | 8.74E-03 |
| 59 | GO:0004197: cysteine-type endopeptidase activity | 9.60E-03 |
| 60 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.00E-02 |
| 61 | GO:0016788: hydrolase activity, acting on ester bonds | 1.06E-02 |
| 62 | GO:0008483: transaminase activity | 1.09E-02 |
| 63 | GO:0051213: dioxygenase activity | 1.19E-02 |
| 64 | GO:0015250: water channel activity | 1.19E-02 |
| 65 | GO:0102483: scopolin beta-glucosidase activity | 1.33E-02 |
| 66 | GO:0008422: beta-glucosidase activity | 1.80E-02 |
| 67 | GO:0016298: lipase activity | 2.57E-02 |
| 68 | GO:0008234: cysteine-type peptidase activity | 2.70E-02 |
| 69 | GO:0015171: amino acid transmembrane transporter activity | 2.70E-02 |
| 70 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.89E-02 |
| 71 | GO:0016746: transferase activity, transferring acyl groups | 3.29E-02 |
| 72 | GO:0016740: transferase activity | 4.12E-02 |
| 73 | GO:0030246: carbohydrate binding | 4.53E-02 |
| 74 | GO:0008017: microtubule binding | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005839: proteasome core complex | 3.22E-16 |
| 2 | GO:0000502: proteasome complex | 9.80E-16 |
| 3 | GO:0019773: proteasome core complex, alpha-subunit complex | 3.12E-09 |
| 4 | GO:0005773: vacuole | 3.94E-07 |
| 5 | GO:0005774: vacuolar membrane | 3.59E-06 |
| 6 | GO:0005829: cytosol | 4.68E-05 |
| 7 | GO:0000421: autophagosome membrane | 4.94E-05 |
| 8 | GO:0005759: mitochondrial matrix | 8.55E-05 |
| 9 | GO:0046861: glyoxysomal membrane | 3.61E-04 |
| 10 | GO:0031410: cytoplasmic vesicle | 3.80E-04 |
| 11 | GO:0005775: vacuolar lumen | 5.20E-04 |
| 12 | GO:0005776: autophagosome | 6.90E-04 |
| 13 | GO:0005771: multivesicular body | 1.07E-03 |
| 14 | GO:0030904: retromer complex | 1.07E-03 |
| 15 | GO:0005801: cis-Golgi network | 1.27E-03 |
| 16 | GO:0000325: plant-type vacuole | 1.46E-03 |
| 17 | GO:0005737: cytoplasm | 1.70E-03 |
| 18 | GO:0009514: glyoxysome | 1.96E-03 |
| 19 | GO:0010494: cytoplasmic stress granule | 2.21E-03 |
| 20 | GO:0008541: proteasome regulatory particle, lid subcomplex | 3.03E-03 |
| 21 | GO:0010008: endosome membrane | 3.34E-03 |
| 22 | GO:0005764: lysosome | 3.93E-03 |
| 23 | GO:0022626: cytosolic ribosome | 6.52E-03 |
| 24 | GO:0009705: plant-type vacuole membrane | 6.70E-03 |
| 25 | GO:0005615: extracellular space | 7.49E-03 |
| 26 | GO:0048046: apoplast | 8.21E-03 |
| 27 | GO:0005777: peroxisome | 8.22E-03 |
| 28 | GO:0032580: Golgi cisterna membrane | 1.05E-02 |
| 29 | GO:0000932: P-body | 1.19E-02 |
| 30 | GO:0005788: endoplasmic reticulum lumen | 1.23E-02 |
| 31 | GO:0005874: microtubule | 1.24E-02 |
| 32 | GO:0031902: late endosome membrane | 1.91E-02 |
| 33 | GO:0005783: endoplasmic reticulum | 2.51E-02 |
| 34 | GO:0005887: integral component of plasma membrane | 2.59E-02 |
| 35 | GO:0009706: chloroplast inner membrane | 3.22E-02 |
| 36 | GO:0016020: membrane | 4.31E-02 |
| 37 | GO:0005794: Golgi apparatus | 4.98E-02 |