co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G59780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009661: chromoplast organization	0.00E+00
2	GO:0032780: negative regulation of ATPase activity	0.00E+00
3	GO:0090470: shoot organ boundary specification	0.00E+00
4	GO:0046294: formaldehyde catabolic process	0.00E+00
5	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
6	GO:0032928: regulation of superoxide anion generation	0.00E+00
7	GO:0071461: cellular response to redox state	7.75E-05
8	GO:0006285: base-excision repair, AP site formation	7.75E-05
9	GO:0000103: sulfate assimilation	8.82E-05
10	GO:1904143: positive regulation of carotenoid biosynthetic process	1.85E-04
11	GO:0080183: response to photooxidative stress	1.85E-04
12	GO:0043100: pyrimidine nucleobase salvage	1.85E-04
13	GO:0016122: xanthophyll metabolic process	1.85E-04
14	GO:2000030: regulation of response to red or far red light	1.85E-04
15	GO:0080005: photosystem stoichiometry adjustment	1.85E-04
16	GO:0019344: cysteine biosynthetic process	2.27E-04
17	GO:1901562: response to paraquat	3.11E-04
18	GO:0009150: purine ribonucleotide metabolic process	3.11E-04
19	GO:0044375: regulation of peroxisome size	3.11E-04
20	GO:0010351: lithium ion transport	3.11E-04
21	GO:0019419: sulfate reduction	3.11E-04
22	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	3.11E-04
23	GO:0044210: 'de novo' CTP biosynthetic process	3.11E-04
24	GO:2001141: regulation of RNA biosynthetic process	4.49E-04
25	GO:0010371: regulation of gibberellin biosynthetic process	4.49E-04
26	GO:0009963: positive regulation of flavonoid biosynthetic process	4.49E-04
27	GO:0009647: skotomorphogenesis	4.49E-04
28	GO:0034613: cellular protein localization	5.98E-04
29	GO:0009649: entrainment of circadian clock	5.98E-04
30	GO:0071585: detoxification of cadmium ion	5.98E-04
31	GO:0098719: sodium ion import across plasma membrane	7.57E-04
32	GO:0010117: photoprotection	7.57E-04
33	GO:0046283: anthocyanin-containing compound metabolic process	7.57E-04
34	GO:0010236: plastoquinone biosynthetic process	7.57E-04
35	GO:0016120: carotene biosynthetic process	7.57E-04
36	GO:0010304: PSII associated light-harvesting complex II catabolic process	9.24E-04
37	GO:0006555: methionine metabolic process	9.24E-04
38	GO:0019509: L-methionine salvage from methylthioadenosine	1.10E-03
39	GO:0010038: response to metal ion	1.29E-03
40	GO:0050821: protein stabilization	1.48E-03
41	GO:0009231: riboflavin biosynthetic process	1.48E-03
42	GO:0006102: isocitrate metabolic process	1.48E-03
43	GO:0016559: peroxisome fission	1.48E-03
44	GO:0030091: protein repair	1.48E-03
45	GO:0009640: photomorphogenesis	1.65E-03
46	GO:0071482: cellular response to light stimulus	1.69E-03
47	GO:0015996: chlorophyll catabolic process	1.69E-03
48	GO:0051453: regulation of intracellular pH	2.14E-03
49	GO:0009688: abscisic acid biosynthetic process	2.37E-03
50	GO:0009641: shade avoidance	2.37E-03
51	GO:0006535: cysteine biosynthetic process from serine	2.37E-03
52	GO:0006879: cellular iron ion homeostasis	2.61E-03
53	GO:0006352: DNA-templated transcription, initiation	2.61E-03
54	GO:0008285: negative regulation of cell proliferation	2.61E-03
55	GO:0006790: sulfur compound metabolic process	2.86E-03
56	GO:0010152: pollen maturation	2.86E-03
57	GO:0009767: photosynthetic electron transport chain	3.12E-03
58	GO:0007031: peroxisome organization	3.66E-03
59	GO:0010073: meristem maintenance	4.52E-03
60	GO:0008299: isoprenoid biosynthetic process	4.52E-03
61	GO:0016226: iron-sulfur cluster assembly	5.13E-03
62	GO:0010227: floral organ abscission	5.45E-03
63	GO:0009693: ethylene biosynthetic process	5.45E-03
64	GO:0006284: base-excision repair	5.77E-03
65	GO:0042391: regulation of membrane potential	6.44E-03
66	GO:0010182: sugar mediated signaling pathway	6.78E-03
67	GO:0006520: cellular amino acid metabolic process	6.78E-03
68	GO:0006814: sodium ion transport	7.13E-03
69	GO:0009556: microsporogenesis	7.49E-03
70	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	7.85E-03
71	GO:0030163: protein catabolic process	8.59E-03
72	GO:0006464: cellular protein modification process	8.97E-03
73	GO:0071805: potassium ion transmembrane transport	9.36E-03
74	GO:0048573: photoperiodism, flowering	1.14E-02
75	GO:0006811: ion transport	1.31E-02
76	GO:0007568: aging	1.36E-02
77	GO:0010119: regulation of stomatal movement	1.36E-02
78	GO:0006099: tricarboxylic acid cycle	1.49E-02
79	GO:0006508: proteolysis	1.51E-02
80	GO:0006468: protein phosphorylation	2.04E-02
81	GO:0009585: red, far-red light phototransduction	2.14E-02
82	GO:0010224: response to UV-B	2.19E-02
83	GO:0009620: response to fungus	2.58E-02
84	GO:0035556: intracellular signal transduction	2.86E-02
85	GO:0009742: brassinosteroid mediated signaling pathway	2.87E-02
86	GO:0009058: biosynthetic process	3.35E-02
87	GO:0006457: protein folding	3.50E-02
88	GO:0055114: oxidation-reduction process	3.83E-02
89	GO:0010228: vegetative to reproductive phase transition of meristem	4.19E-02
90	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.40E-02
91	GO:0007166: cell surface receptor signaling pathway	4.47E-02
92	GO:0009617: response to bacterium	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
2	GO:0042030: ATPase inhibitor activity	0.00E+00
3	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
4	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
5	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
6	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	7.75E-05
7	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	7.75E-05
8	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	7.75E-05
9	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	7.75E-05
10	GO:0016783: sulfurtransferase activity	7.75E-05
11	GO:0004450: isocitrate dehydrogenase (NADP+) activity	1.85E-04
12	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	1.85E-04
13	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	1.85E-04
14	GO:0050347: trans-octaprenyltranstransferase activity	1.85E-04
15	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	1.85E-04
16	GO:0009973: adenylyl-sulfate reductase activity	1.85E-04
17	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	1.85E-04
18	GO:0016491: oxidoreductase activity	1.89E-04
19	GO:0004180: carboxypeptidase activity	3.11E-04
20	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	3.11E-04
21	GO:0003935: GTP cyclohydrolase II activity	3.11E-04
22	GO:0047627: adenylylsulfatase activity	4.49E-04
23	GO:0009001: serine O-acetyltransferase activity	4.49E-04
24	GO:0008106: alcohol dehydrogenase (NADP+) activity	4.49E-04
25	GO:0004792: thiosulfate sulfurtransferase activity	4.49E-04
26	GO:0003883: CTP synthase activity	4.49E-04
27	GO:0001053: plastid sigma factor activity	5.98E-04
28	GO:0019104: DNA N-glycosylase activity	5.98E-04
29	GO:0016987: sigma factor activity	5.98E-04
30	GO:0016407: acetyltransferase activity	7.57E-04
31	GO:0015081: sodium ion transmembrane transporter activity	9.24E-04
32	GO:0004709: MAP kinase kinase kinase activity	9.24E-04
33	GO:0000293: ferric-chelate reductase activity	9.24E-04
34	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	9.24E-04
35	GO:0005261: cation channel activity	1.10E-03
36	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	1.48E-03
37	GO:0071949: FAD binding	1.91E-03
38	GO:0015386: potassium:proton antiporter activity	2.61E-03
39	GO:0031072: heat shock protein binding	3.12E-03
40	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.12E-03
41	GO:0030552: cAMP binding	3.66E-03
42	GO:0030553: cGMP binding	3.66E-03
43	GO:0005216: ion channel activity	4.52E-03
44	GO:0004176: ATP-dependent peptidase activity	4.82E-03
45	GO:0033612: receptor serine/threonine kinase binding	4.82E-03
46	GO:0004672: protein kinase activity	4.95E-03
47	GO:0005249: voltage-gated potassium channel activity	6.44E-03
48	GO:0030551: cyclic nucleotide binding	6.44E-03
49	GO:0042802: identical protein binding	6.82E-03
50	GO:0048038: quinone binding	7.85E-03
51	GO:0016788: hydrolase activity, acting on ester bonds	8.46E-03
52	GO:0015385: sodium:proton antiporter activity	8.59E-03
53	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.59E-03
54	GO:0008483: transaminase activity	9.36E-03
55	GO:0008237: metallopeptidase activity	9.36E-03
56	GO:0008233: peptidase activity	1.01E-02
57	GO:0052689: carboxylic ester hydrolase activity	1.14E-02
58	GO:0008236: serine-type peptidase activity	1.18E-02
59	GO:0004222: metalloendopeptidase activity	1.31E-02
60	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.45E-02
61	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.54E-02
62	GO:0051287: NAD binding	1.98E-02
63	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.14E-02
64	GO:0016298: lipase activity	2.19E-02
65	GO:0022857: transmembrane transporter activity	2.64E-02
66	GO:0051082: unfolded protein binding	2.75E-02
67	GO:0016746: transferase activity, transferring acyl groups	2.81E-02
68	GO:0030170: pyridoxal phosphate binding	3.48E-02
69	GO:0005515: protein binding	3.64E-02
70	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.86E-02
71	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0031972: chloroplast intermembrane space	7.75E-05
2	GO:0000152: nuclear ubiquitin ligase complex	7.75E-05
3	GO:0031969: chloroplast membrane	2.13E-04
4	GO:0009507: chloroplast	3.74E-04
5	GO:0009517: PSII associated light-harvesting complex II	5.98E-04
6	GO:0009526: plastid envelope	5.98E-04
7	GO:0031463: Cul3-RING ubiquitin ligase complex	9.24E-04
8	GO:0005779: integral component of peroxisomal membrane	1.69E-03
9	GO:0042644: chloroplast nucleoid	1.91E-03
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.91E-03
11	GO:0016604: nuclear body	2.14E-03
12	GO:0009536: plastid	3.77E-03
13	GO:0005777: peroxisome	6.19E-03
14	GO:0032580: Golgi cisterna membrane	8.97E-03
15	GO:0005778: peroxisomal membrane	9.36E-03
16	GO:0010008: endosome membrane	2.47E-02
17	GO:0009706: chloroplast inner membrane	2.75E-02
18	GO:0009941: chloroplast envelope	2.84E-02
19	GO:0010287: plastoglobule	3.11E-02
20	GO:0009535: chloroplast thylakoid membrane	3.50E-02
21	GO:0005886: plasma membrane	3.98E-02